mRNA_H-elongata_contig170572.4365.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170572.4365.1
Unique NamemRNA_H-elongata_contig170572.4365.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170572.4365.1 vs. uniprot
Match: D8LMI6_ECTSI (Glycolipid 2-alpha-mannosyltransferase, N-terminal, family GT15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMI6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 3.870e-35
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 IVPVPIYFVEVEFKLPDWMEPLSWIYPLAVKHFTGHPRSHPLVGFHSDMHGMLPYVKRGSFGYFHMCR 204
            +VPVPI+FV+V FKLPDWMEPLSW+YPLAVK FTGHP+S P+VG+HS+M G+LPYVKRG FGYFHMCR
Sbjct:  272 MVPVPIHFVKVAFKLPDWMEPLSWVYPLAVKQFTGHPKSEPVVGYHSEMRGLLPYVKRGGFGYFHMCR 339
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170572.4365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMI6_ECTSI3.870e-3579.41Glycolipid 2-alpha-mannosyltransferase, N-terminal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170572contigH-elongata_contig170572:317..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionGlycolipid 2-alpha-mannosyltransferase,family GT15
Ec32 orthologEc-05_002900.1
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.852792-CDS-H-elongata_contig170572:316..4001622929993.852792-CDS-H-elongata_contig170572:316..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170572 317..400 +
1691679238.5015497-CDS-H-elongata_contig170572:316..4001691679238.5015497-CDS-H-elongata_contig170572:316..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170572 317..400 +
1622929993.8683596-CDS-H-elongata_contig170572:799..9221622929993.8683596-CDS-H-elongata_contig170572:799..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170572 800..922 +
1691679238.5099435-CDS-H-elongata_contig170572:799..9221691679238.5099435-CDS-H-elongata_contig170572:799..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170572 800..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170572.4365.1prot_H-elongata_contig170572.4365.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170572 317..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170572.4365.1

>prot_H-elongata_contig170572.4365.1 ID=prot_H-elongata_contig170572.4365.1|Name=mRNA_H-elongata_contig170572.4365.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
IVPVPIYFVEVEFKLPDWMEPLSWIYPLAVKHFTGHPRSHPLVGFHSDMH
GMLPYVKRGSFGYFHMCR*
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mRNA from alignment at H-elongata_contig170572:317..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170572.4365.1 ID=mRNA_H-elongata_contig170572.4365.1|Name=mRNA_H-elongata_contig170572.4365.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig170572:317..922+ (Himanthalia elongata Himel1 dioecious)
ATCGTTCCGGTCCCGATATACTTCGTTGAGGTGGAGTTCAAGCTTCCGGA
CTGGATGGAGCCGTTAAGCTGGATATATCCGTTGGTGAGGGAAGAAAATA
ATAACACAACTATCCCCTCACCCCCACTAAAGTAAGAGGCAAATACACCC
CGTGTAACCACACTAAAACTAAGCACTAAGTACCAGCATTAATTTTGTAG
TAAGGCAAATCCAAGAGCAAATCCATCCCGTCTAACTGCACGAAAGATAA
GCAATAACTAAGTCTTAATGATAAAATAAGAGGGAAAGCCGAGAGCAAAT
ACATCTCGTCTAACCACACTAAAACTAAGTAATAACTGAGTAGTAATAGC
TGTCACCAAACGGTACTCCTCGAGACATCAGTCAAAAATATTAAGAATTT
AGTTTAGAGCAAGCCAAGCGCCAATTCTTATTTCACCGCTCCCCGCCCCA
AACCTAACGCCCATCCCCGCTGCTCTGCTCCAGGCGGTGAAGCACTTCAC
GGGGCATCCGAGATCCCATCCCCTCGTGGGTTTCCACAGTGACATGCACG
GTATGCTCCCCTACGTGAAACGGGGAAGCTTTGGTTACTTTCACATGTGC
AGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig170572:317..922+

>mRNA_H-elongata_contig170572.4365.1 ID=mRNA_H-elongata_contig170572.4365.1|Name=mRNA_H-elongata_contig170572.4365.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig170572:317..922+ (Himanthalia elongata Himel1 dioecious)
ATCGTTCCGGTCCCGATATACTTCGTTGAGGTGGAGTTCAAGCTTCCGGA
CTGGATGGAGCCGTTAAGCTGGATATATCCGTTGATCGTTCCGGTCCCGA
TATACTTCGTTGAGGTGGAGTTCAAGCTTCCGGACTGGATGGAGCCGTTA
AGCTGGATATATCCGTTGGCGGTGAAGCACTTCACGGGGCATCCGAGATC
CCATCCCCTCGTGGGTTTCCACAGTGACATGCACGGTATGCTCCCCTACG
TGAAACGGGGAAGCTTTGGTTACTTTCACATGTGCAGGTGAGCGGTGAAG
CACTTCACGGGGCATCCGAGATCCCATCCCCTCGTGGGTTTCCACAGTGA
CATGCACGGTATGCTCCCCTACGTGAAACGGGGAAGCTTTGGTTACTTTC
ACATGTGCAGGTGA
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