mRNA_H-elongata_contig170553.4362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170553.4362.1
Unique NamemRNA_H-elongata_contig170553.4362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6G0JIQ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JIQ2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.650e-15
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN      + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ES+++TF
Sbjct:   71 WNETIDKQLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKTF 173
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6A3V667_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V667_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.080e-14
Identity = 38/104 (36.54%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN+     + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  N + R L I Q  Y ES+++TF
Sbjct:  265 WNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTF 367
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.120e-14
Identity = 38/104 (36.54%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN+     + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  N + R L I Q  Y ES+++TF
Sbjct:  265 WNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTF 367
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.190e-14
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            W       +   GFE  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM+  F
Sbjct:   22 WGFEAADALIENGFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESMLTRF 124
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6A3QSP0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QSP0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.080e-14
Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN      + ++GFE   AD CV  +  +G+ E +V ++V+G+L  ++DKA +   +A + KKF++KD+G AR+ +G  I  + + R L I Q  Y ES+++ F
Sbjct:   40 WNETIFKHLKSMGFEPSDADRCVYMRG-EGDDECIVWLNVDGMLIASRDKAVIASVKAGIAKKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKF 142
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A225UUI6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UUI6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.270e-14
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN    G +  +GF+ G ADPCV  +  DG+ E  V ++VN +L  ++DK  +   +A + +KF++KD+G AR+ +G  I  +   + L I Q  Y ES+++ F
Sbjct:   99 WNKTIDGHLQGMGFKAGDADPCVYTRG-DGDDECTVCLYVNDMLIASRDKDVIASVKAGIEEKFRIKDLGRARFILGIEIDYDMDGKTLGISQRAYTESIIKKF 201
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.270e-14
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            W       +   G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:   22 WGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 124
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.510e-14
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            W       +   G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  YVESM++ F
Sbjct:   22 WGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRF 124
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6G0M616_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0M616_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.520e-14
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            WN      + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  + + R L I Q  Y ES+++ F
Sbjct:   16 WNETIDKHLKSMGFEPSDADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKF 118
[Close]
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.570e-14
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:    1 WNNNFCGDMAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 312
            W       +   G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:   91 WGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0JIQ2_9STRA9.650e-1535.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V667_9STRA1.080e-1436.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q8N8_9STRA1.120e-1436.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5L296_9PHAE3.190e-1438.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3QSP0_9STRA4.080e-1435.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A225UUI6_9STRA4.270e-1435.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE4.270e-1437.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE5.510e-1438.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0M616_9STRA6.520e-1434.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE8.570e-1437.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170553contigH-elongata_contig170553:8..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog3055.EDP10003
EggNOG free text desc.Mitochondrial protein
EggNOG OGs34MIE@3041,37THH@33090,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.56438-CDS-H-elongata_contig170553:7..2951622929993.56438-CDS-H-elongata_contig170553:7..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170553 8..295 -
1691679238.408847-CDS-H-elongata_contig170553:7..2951691679238.408847-CDS-H-elongata_contig170553:7..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170553 8..295 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.583874-UTR-H-elongata_contig170553:295..3191622929993.583874-UTR-H-elongata_contig170553:295..319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170553 296..319 -
1691679238.417758-UTR-H-elongata_contig170553:295..3191691679238.417758-UTR-H-elongata_contig170553:295..319Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170553 296..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170553.4362.1prot_H-elongata_contig170553.4362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170553 8..295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170553.4362.1

>prot_H-elongata_contig170553.4362.1 ID=prot_H-elongata_contig170553.4362.1|Name=mRNA_H-elongata_contig170553.4362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEA
ELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF
back to top

mRNA from alignment at H-elongata_contig170553:8..319-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170553.4362.1 ID=mRNA_H-elongata_contig170553.4362.1|Name=mRNA_H-elongata_contig170553.4362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig170553:8..319- (Himanthalia elongata Himel1 dioecious)
TGGAACAACAACTTCTGTGGCGATATGGCAGCGATTGGATTCGAACATGG
AAAGGCGGATCCGTGCGTGTCCCGTAAGGTCGTTGACGGCGAGGCGGAAG
TGGTGGTGGTCGTTCACGTGAACGGTATTCTTGCTCACGCCAAGGACAAA
GCGACTATGGATAGATTCGAGGCTGAGCTTGGAAAAAAGTTCAAATTGAA
GGACATGGGTGACGCCAGGTACTACATGGGTTGTCACATTACTAGGAACC
GCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCAATG
GTGGAAACGTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig170553:8..319-

>mRNA_H-elongata_contig170553.4362.1 ID=mRNA_H-elongata_contig170553.4362.1|Name=mRNA_H-elongata_contig170553.4362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig170553:8..319- (Himanthalia elongata Himel1 dioecious)
ATGGCAGCGATTGGATTCGAACATGGAAAGGCGGATCCGTGCGTGTCCCG
TAAGGTCGTTGACGGCGAGGCGGAAGTGGTGGTGGTCGTTCACGTGAACG
GTATTCTTGCTCACGCCAAGGACAAAGCGACTATGGATAGATTCGAGGCT
GAGCTTGGAAAAAAGTTCAAATTGAAGGACATGGGTGACGCCAGGTACTA
CATGGGTTGTCACATTACTAGGAACCGCAAGGCGCGCGAGCTGAAGATCG
ACCAACACTTGTACGTGGAGTCAATGGTGGAAACGTTCATGGCAGCGATT
GGATTCGAACATGGAAAGGCGGATCCGTGCGTGTCCCGTAAGGTCGTTGA
CGGCGAGGCGGAAGTGGTGGTGGTCGTTCACGTGAACGGTATTCTTGCTC
ACGCCAAGGACAAAGCGACTATGGATAGATTCGAGGCTGAGCTTGGAAAA
AAGTTCAAATTGAAGGACATGGGTGACGCCAGGTACTACATGGGTTGTCA
CATTACTAGGAACCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGT
ACGTGGAGTCAATGGTGGAAACGTTC
back to top