prot_H-elongata_contig170553.4362.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170553.4362.1
Unique Nameprot_H-elongata_contig170553.4362.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.640e-14
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            GFE  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM+  F
Sbjct:   34 GFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESMLTRF 124          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.170e-14
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:   34 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 124          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.780e-14
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  YVESM++ F
Sbjct:   34 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRF 124          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:  103 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGDREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF 193          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JNU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:  428 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 518          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-13
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ IL  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:  670 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 760          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5K2N9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.260e-13
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 0
Query:    2 AAIGFEHG--KADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            A IG  +G  + DPCV RKVVDGE   ++V++V+GIL  A D+   +   A L KKF +KD+G   +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:  272 ALIGNGYGQCRVDPCVFRKVVDGEVVGLIVIYVDGILV-AADEGEREELFASLNKKFPVKDLGGCTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 367          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6A3V667_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V667_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.390e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    1 MAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  N + R L I Q  Y ES+++TF
Sbjct:  273 LKSMGFEPADADPCVYTR-GEGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTF 367          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.490e-13
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    1 MAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            + ++GFE   ADPCV  +  +GE E +V ++V+ +L  ++ KA +   +A + +KF++KD+G AR+ +G  I  N + R L I Q  Y ES+++TF
Sbjct:  273 LKSMGFEPADADPCVYTR-GEGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTF 367          
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.510e-13
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 0
Query:    5 GFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEAELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF 96
            G+E  + DPCV RKVVDGE   ++V++V+ I+  A D+   +   A L KKF +KD+G+  +Y GC I  + +    K+ Q  Y+ESM++ F
Sbjct:  383 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV-AADEGEREELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 473          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170553.4362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L296_9PHAE4.640e-1442.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE6.170e-1441.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE7.780e-1442.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.200e-1341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNU5_9PHAE1.400e-1341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.400e-1341.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2N9_9PHAE3.260e-1342.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V667_9STRA3.390e-1337.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q8N8_9STRA3.490e-1337.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KF18_9PHAE3.510e-1340.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 20..95
e-value: 5.6E-11
score: 42.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170553contigH-elongata_contig170553:8..295 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170553.4362.1mRNA_H-elongata_contig170553.4362.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170553 8..319 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170553.4362.1 ID=prot_H-elongata_contig170553.4362.1|Name=mRNA_H-elongata_contig170553.4362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MAAIGFEHGKADPCVSRKVVDGEAEVVVVVHVNGILAHAKDKATMDRFEA
ELGKKFKLKDMGDARYYMGCHITRNRKARELKIDQHLYVESMVETF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2