mRNA_H-elongata_contig168811.4283.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168811.4283.1
Unique NamemRNA_H-elongata_contig168811.4283.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: D7FUY4_ECTSI (Protofilament ribbon protein of flagellar microtubules n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUY4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.830e-36
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1
Query:   16 KDSALFGAGSNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            +   L GAG+  PT G+V N GLVLQF+AYFKE+VDESPLENHRVRKC+IL+YLEDSS++I E RQENSGM QGTLVKRH++PYPE
Sbjct:   69 RSQPLLGAGAGAPTAGFVTNSGLVLQFDAYFKEAVDESPLENHRVRKCKILVYLEDSSVQIDEYRQENSGMPQGTLVKRHQIPYPE 154          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: H3GXD9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXD9_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 7.550e-20
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++AN   VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIANDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A225WVC5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WVC5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.990e-20
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++AN   VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIANDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPRPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: G5AAP3_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5AAP3_PHYSP)

HSP 1 Score: 91.7 bits (226), Expect = 1.360e-19
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++AN   VL+FEAYF E+V ES +EN+RVR+C +L YLED +L+I E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIANDKKVLRFEAYFLEAVHESNMENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A7S3YE31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE31_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 4.400e-19
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRV 261
            +V NC  VL F  YFKESV ES LENHRVRKC I  YLED S++++E +QENSG+ QGT ++RH+V
Sbjct:   79 FVKNCNDVLCFYGYFKESVTESALENHRVRKCDIYYYLEDDSIQVNEHKQENSGIPQGTFIRRHQV 144          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A662WDJ9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDJ9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.470e-19
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++AN   VL+F AYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIANDKRVLRFGAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: W2JK64_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2JK64_PHYPR)

HSP 1 Score: 89.4 bits (220), Expect = 8.840e-19
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++A    VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIAYDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A418FB47_9STRA (DM10 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FB47_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-18
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   43 SNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            S +    ++A    VL+FE YF E+V ES +EN+RVRKC +L YLED++++I E + ENSG+LQG  VKRHR+P PE
Sbjct:   61 SKSKVPNFIALDKKVLRFEGYFLEAVHESNVENYRVRKCVVLYYLEDNTIQIIEPKIENSGILQGNFVKRHRIPKPE 137          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: D0NA24_PHYIT (EF-hand domain-containing protein, putative n=4 Tax=Phytophthora TaxID=4783 RepID=D0NA24_PHYIT)

HSP 1 Score: 89.0 bits (219), Expect = 1.210e-18
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
            ++A    VL+FEAYF E+V ES LEN+RVR+C +L YLED +L++ E + ENSG+LQG  VKRHR+P PE
Sbjct:   72 FIAYDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQVTEPKVENSGILQGNFVKRHRIPMPE 141          
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A7S2SW42_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW42_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.590e-18
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   40 GSNTPTVGYVANCGL-----VLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVP 264
            GS  P  G V N G      VL F +YFKESV ESPLENHR+RKC +  + +DSS++I E + ENSG+ QGT +KRH+VP
Sbjct:   10 GSQRPMTGSVRNAGSMHSSRVLVFHSYFKESVHESPLENHRIRKCDLFYFTQDSSIQILERKMENSGVPQGTFLKRHQVP 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUY4_ECTSI4.830e-3673.26Protofilament ribbon protein of flagellar microtub... [more]
H3GXD9_PHYRM7.550e-2061.43Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225WVC5_9STRA9.990e-2061.43Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
G5AAP3_PHYSP1.360e-1960.00Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7S3YE31_HETAK4.400e-1962.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A662WDJ9_9STRA6.470e-1960.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
W2JK64_PHYPR8.840e-1960.00Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A418FB47_9STRA1.110e-1853.25DM10 domain-containing protein n=4 Tax=Aphanomyces... [more]
D0NA24_PHYIT1.210e-1858.57EF-hand domain-containing protein, putative n=4 Ta... [more]
A0A7S2SW42_9STRA1.590e-1855.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168811contigH-elongata_contig168811:856..1134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.3
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D7FUY4
Preferred nameRIB72
EggNOG free text desc.alpha-tubulin binding
EggNOG OGsKOG0043@1,KOG0043@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtofilament ribbon protein of flagellar microtubules
Ec32 orthologEc-01_008650.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929986.6173246-CDS-H-elongata_contig168811:855..11341622929986.6173246-CDS-H-elongata_contig168811:855..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168811 856..1134 +
1691679235.5458467-CDS-H-elongata_contig168811:855..11341691679235.5458467-CDS-H-elongata_contig168811:855..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168811 856..1134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168811.4283.1prot_H-elongata_contig168811.4283.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168811 856..1134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168811.4283.1

>prot_H-elongata_contig168811.4283.1 ID=prot_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
GLEPRKDSALFGAGSNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRV
RKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPEVN
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mRNA from alignment at H-elongata_contig168811:856..1134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168811.4283.1 ID=mRNA_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig168811:856..1134+ (Himanthalia elongata Himel1 dioecious)
GGGCTAGAACCTAGGAAGGATTCGGCTCTCTTCGGCGCCGGCTCAAACAC GCCGACAGTTGGGTACGTCGCAAATTGCGGGCTTGTGCTGCAGTTCGAGG CGTACTTCAAAGAATCAGTCGACGAGTCGCCGCTGGAGAACCACCGCGTT CGCAAGTGTAGGATCTTGATCTACCTCGAAGACTCTTCTTTGGAGATCCA TGAGTGCAGGCAGGAAAACAGCGGGATGCTTCAGGGGACTTTGGTCAAAC GACATCGTGTGCCGTACCCGGAGGTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig168811:856..1134+

>mRNA_H-elongata_contig168811.4283.1 ID=mRNA_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig168811:856..1134+ (Himanthalia elongata Himel1 dioecious)
GGGCTAGAACCTAGGAAGGATTCGGCTCTCTTCGGCGCCGGCTCAAACAC
GCCGACAGTTGGGTACGTCGCAAATTGCGGGCTTGTGCTGCAGTTCGAGG
CGTACTTCAAAGAATCAGTCGACGAGTCGCCGCTGGAGAACCACCGCGTT
CGCAAGTGTAGGATCTTGATCTACCTCGAAGACTCTTCTTTGGAGATCCA
TGAGTGCAGGCAGGAAAACAGCGGGATGCTTCAGGGGACTTTGGTCAAAC
GACATCGTGTGCCGTACCCGGAGGTGAACGGGCTAGAACCTAGGAAGGAT
TCGGCTCTCTTCGGCGCCGGCTCAAACACGCCGACAGTTGGGTACGTCGC
AAATTGCGGGCTTGTGCTGCAGTTCGAGGCGTACTTCAAAGAATCAGTCG
ACGAGTCGCCGCTGGAGAACCACCGCGTTCGCAAGTGTAGGATCTTGATC
TACCTCGAAGACTCTTCTTTGGAGATCCATGAGTGCAGGCAGGAAAACAG
CGGGATGCTTCAGGGGACTTTGGTCAAACGACATCGTGTGCCGTACCCGG
AGGTGAAC
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