mRNA_H-elongata_contig168811.4283.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: D7FUY4_ECTSI (Protofilament ribbon protein of flagellar microtubules n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUY4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 4.830e-36 Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1
Query: 16 KDSALFGAGSNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
+ L GAG+ PT G+V N GLVLQF+AYFKE+VDESPLENHRVRKC+IL+YLEDSS++I E RQENSGM QGTLVKRH++PYPE
Sbjct: 69 RSQPLLGAGAGAPTAGFVTNSGLVLQFDAYFKEAVDESPLENHRVRKCKILVYLEDSSVQIDEYRQENSGMPQGTLVKRHQIPYPE 154
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: H3GXD9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXD9_PHYRM) HSP 1 Score: 92.4 bits (228), Expect = 7.550e-20 Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++AN VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIANDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A225WVC5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WVC5_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 9.990e-20 Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++AN VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIANDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPRPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: G5AAP3_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5AAP3_PHYSP) HSP 1 Score: 91.7 bits (226), Expect = 1.360e-19 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++AN VL+FEAYF E+V ES +EN+RVR+C +L YLED +L+I E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIANDKKVLRFEAYFLEAVHESNMENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A7S3YE31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE31_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 4.400e-19 Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRV 261
+V NC VL F YFKESV ES LENHRVRKC I YLED S++++E +QENSG+ QGT ++RH+V
Sbjct: 79 FVKNCNDVLCFYGYFKESVTESALENHRVRKCDIYYYLEDDSIQVNEHKQENSGIPQGTFIRRHQV 144
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A662WDJ9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDJ9_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.470e-19 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++AN VL+F AYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIANDKRVLRFGAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: W2JK64_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2JK64_PHYPR) HSP 1 Score: 89.4 bits (220), Expect = 8.840e-19 Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++A VL+FEAYF E+V ES LEN+RVR+C +L YLED +L+I E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIAYDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQITEPKVENSGILQGNFVKRHRIPMPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A418FB47_9STRA (DM10 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FB47_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.110e-18 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 43 SNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
S + ++A VL+FE YF E+V ES +EN+RVRKC +L YLED++++I E + ENSG+LQG VKRHR+P PE
Sbjct: 61 SKSKVPNFIALDKKVLRFEGYFLEAVHESNVENYRVRKCVVLYYLEDNTIQIIEPKIENSGILQGNFVKRHRIPKPE 137
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: D0NA24_PHYIT (EF-hand domain-containing protein, putative n=4 Tax=Phytophthora TaxID=4783 RepID=D0NA24_PHYIT) HSP 1 Score: 89.0 bits (219), Expect = 1.210e-18 Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 64 YVANCGLVLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVPYPE 273
++A VL+FEAYF E+V ES LEN+RVR+C +L YLED +L++ E + ENSG+LQG VKRHR+P PE
Sbjct: 72 FIAYDKKVLRFEAYFLEAVHESNLENYRVRRCEVLYYLEDDTLQVTEPKVENSGILQGNFVKRHRIPMPE 141
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Match: A0A7S2SW42_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW42_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.590e-18 Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 40 GSNTPTVGYVANCGL-----VLQFEAYFKESVDESPLENHRVRKCRILIYLEDSSLEIHECRQENSGMLQGTLVKRHRVP 264
GS P G V N G VL F +YFKESV ESPLENHR+RKC + + +DSS++I E + ENSG+ QGT +KRH+VP
Sbjct: 10 GSQRPMTGSVRNAGSMHSSRVLVFHSYFKESVHESPLENHRIRKCDLFYFTQDSSIQILERKMENSGVPQGTFLKRHQVP 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168811.4283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig168811.4283.1 >prot_H-elongata_contig168811.4283.1 ID=prot_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp GLEPRKDSALFGAGSNTPTVGYVANCGLVLQFEAYFKESVDESPLENHRVback to top mRNA from alignment at H-elongata_contig168811:856..1134+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig168811.4283.1 ID=mRNA_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig168811:856..1134+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig168811:856..1134+ >mRNA_H-elongata_contig168811.4283.1 ID=mRNA_H-elongata_contig168811.4283.1|Name=mRNA_H-elongata_contig168811.4283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig168811:856..1134+ (Himanthalia elongata Himel1 dioecious)back to top |