mRNA_H-elongata_contig16820.4254.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: D7G5D9_ECTSI (Arginine/ornithine transport system ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D9_ECTSI) HSP 1 Score: 115 bits (289), Expect = 4.720e-31 Identity = 55/80 (68.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 1 RAARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
+AARATASDY+AAL RRKL CWAPPVLRCSALR EG+D VWEQV++FR ++E GLL +RR++QA HW+++HL+QQLM
Sbjct: 36 KAARATASDYSAALGLARRKLSCWAPPVLRCSALRSEGIDQVWEQVVKFRSLIEGNGLLGSRRKQQAAHWMRQHLRQQLM 115
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI00115D4A75 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D4A75) HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10 Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 4 AARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
AA+ +YA+AL R W PPVLRCSAL ++G+ VW V E+RR+M E G +++RR QA W+ + + L+
Sbjct: 207 AAQRAQREYASALHLLRPASAAWTPPVLRCSALSRDGLGEVWTMVEEYRRVMGESGEIDSRRAAQARAWMWNEVNETLL 285
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A4V2J6H0_9GAMM (Methylmalonyl Co-A mutase-associated GTPase MeaB n=3 Tax=Hafnia TaxID=568 RepID=A0A4V2J6H0_9GAMM) HSP 1 Score: 62.4 bits (150), Expect = 1.370e-9 Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 28 YAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQ 231
Y +AL RRK W P VL CSAL+K G++ VW+ VL F ++M G L R++Q++ WV+R +++
Sbjct: 217 YHSALQIIRRKYPVWQPQVLTCSALKKRGINEVWQAVLAFWQVMSASGQLTTLRQQQSLGWVRRQIEE 284
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A7S3PDJ3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PDJ3_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.490e-9 Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWV 213
AR +++Y AL RRK W P V RCSAL+KE +D VWE V +FR IM E G + +R Q+ W+
Sbjct: 20 ARHASTEYMHALQLMRRKHPDWRPRVKRCSALKKEKIDTVWETVSKFRNIMTENGGIRQKRLLQSNSWM 88
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI00166608E5 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Salinarimonas ramus TaxID=690164 RepID=UPI00166608E5) HSP 1 Score: 62.0 bits (149), Expect = 1.850e-9 Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWV 213
ARA A++Y ALS W PPV+ S L EG+DA+WE++L+ R E GL+ ARRRRQ + W+
Sbjct: 209 ARAAAAEYRTALSILTPASSLWTPPVVTVSGLNGEGLDALWEKILDHRARHEAKGLIAARRRRQDVKWL 277
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A7X1GZE6_9DELT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1GZE6_9DELT) HSP 1 Score: 61.2 bits (147), Expect = 3.540e-9 Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVK 216
AR A YA+AL W PPVL CSA+ EGVDAVW+ VL+ R+ M+ G + +RR QA+ W++
Sbjct: 210 ARQAARAYASALHLLSPASAHWQPPVLTCSAVTMEGVDAVWQTVLDHRQKMQTSGEFDIKRRGQALDWLQ 279
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A843RF41_9PROT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RF41_9PROT) HSP 1 Score: 60.8 bits (146), Expect = 4.900e-9 Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query: 4 AARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
AA ++Y AAL R W PPVLRCSAL EG++AVWE V + R +ME G A+R QA W+ + LM
Sbjct: 215 AAERAVAEYHAALGMLRAPNPEWRPPVLRCSALLGEGIEAVWETVQQHREVMEASGARAAKRAAQAGAWMWAEISDGLM 293
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI0004B6FC7D (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Nocardiopsis sp. CNT312 TaxID=1137268 RepID=UPI0004B6FC7D) HSP 1 Score: 60.8 bits (146), Expect = 5.060e-9 Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
AR A + + A+ R W PPVL CS L +G+D VWE VLE RR++E GG L RR Q + W+ ++ Q+M
Sbjct: 221 ARRAARELSRAMRLLRPVHPDWRPPVLTCSGLSGDGLDRVWESVLEHRRMLERGGALAERRSEQRVSWMWDQVRDQVM 298
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A087U4X6_STEMI (Methylmalonic aciduria type A-like protein, mitochondrial (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087U4X6_STEMI) HSP 1 Score: 60.1 bits (144), Expect = 9.970e-9 Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
AR ++Y +AL F R++ W P VLR S+ KEG++ +WE++L+F+ + E G LE R+ Q W+ H++ L+
Sbjct: 274 ARLIQTEYVSALKFVRQRFRSWRPIVLRVSSRTKEGIENLWEEMLDFQETLLESGELELNRKNQYNKWLWTHVEHNLL 351
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI0018726DAD (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018726DAD) HSP 1 Score: 59.7 bits (143), Expect = 1.260e-8 Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 22 SDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
++Y AL R W PPVL+CSAL EG+DAVWE V + R IME G A+R QA W+ + LM
Sbjct: 217 AEYYGALGLLRAPNPDWRPPVLKCSALLDEGIDAVWETVQKHREIMEASGARAAKRAAQAGAWMWAEISDGLM 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16820.4254.1 >prot_H-elongata_contig16820.4254.1 ID=prot_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp RAARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRback to top mRNA from alignment at H-elongata_contig16820:100..616+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16820.4254.1 ID=mRNA_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at H-elongata_contig16820:100..616+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16820:100..616+ >mRNA_H-elongata_contig16820.4254.1 ID=mRNA_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig16820:100..616+ (Himanthalia elongata Himel1 dioecious)back to top |