mRNA_H-elongata_contig16820.4254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16820.4254.1
Unique NamemRNA_H-elongata_contig16820.4254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: D7G5D9_ECTSI (Arginine/ornithine transport system ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.720e-31
Identity = 55/80 (68.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 RAARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            +AARATASDY+AAL   RRKL CWAPPVLRCSALR EG+D VWEQV++FR ++E  GLL +RR++QA HW+++HL+QQLM
Sbjct:   36 KAARATASDYSAALGLARRKLSCWAPPVLRCSALRSEGIDQVWEQVVKFRSLIEGNGLLGSRRKQQAAHWMRQHLRQQLM 115          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI00115D4A75 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D4A75)

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    4 AARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            AA+    +YA+AL   R     W PPVLRCSAL ++G+  VW  V E+RR+M E G +++RR  QA  W+   + + L+
Sbjct:  207 AAQRAQREYASALHLLRPASAAWTPPVLRCSALSRDGLGEVWTMVEEYRRVMGESGEIDSRRAAQARAWMWNEVNETLL 285          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A4V2J6H0_9GAMM (Methylmalonyl Co-A mutase-associated GTPase MeaB n=3 Tax=Hafnia TaxID=568 RepID=A0A4V2J6H0_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-9
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   28 YAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQ 231
            Y +AL   RRK   W P VL CSAL+K G++ VW+ VL F ++M   G L   R++Q++ WV+R +++
Sbjct:  217 YHSALQIIRRKYPVWQPQVLTCSALKKRGINEVWQAVLAFWQVMSASGQLTTLRQQQSLGWVRRQIEE 284          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A7S3PDJ3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PDJ3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-9
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWV 213
            AR  +++Y  AL   RRK   W P V RCSAL+KE +D VWE V +FR IM E G +  +R  Q+  W+
Sbjct:   20 ARHASTEYMHALQLMRRKHPDWRPRVKRCSALKKEKIDTVWETVSKFRNIMTENGGIRQKRLLQSNSWM 88          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI00166608E5 (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Salinarimonas ramus TaxID=690164 RepID=UPI00166608E5)

HSP 1 Score: 62.0 bits (149), Expect = 1.850e-9
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWV 213
            ARA A++Y  ALS        W PPV+  S L  EG+DA+WE++L+ R   E  GL+ ARRRRQ + W+
Sbjct:  209 ARAAAAEYRTALSILTPASSLWTPPVVTVSGLNGEGLDALWEKILDHRARHEAKGLIAARRRRQDVKWL 277          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A7X1GZE6_9DELT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7X1GZE6_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 3.540e-9
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVK 216
            AR  A  YA+AL         W PPVL CSA+  EGVDAVW+ VL+ R+ M+  G  + +RR QA+ W++
Sbjct:  210 ARQAARAYASALHLLSPASAHWQPPVLTCSAVTMEGVDAVWQTVLDHRQKMQTSGEFDIKRRGQALDWLQ 279          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A843RF41_9PROT (Methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RF41_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 4.900e-9
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    4 AARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            AA    ++Y AAL   R     W PPVLRCSAL  EG++AVWE V + R +ME  G   A+R  QA  W+   +   LM
Sbjct:  215 AAERAVAEYHAALGMLRAPNPEWRPPVLRCSALLGEGIEAVWETVQQHREVMEASGARAAKRAAQAGAWMWAEISDGLM 293          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI0004B6FC7D (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Nocardiopsis sp. CNT312 TaxID=1137268 RepID=UPI0004B6FC7D)

HSP 1 Score: 60.8 bits (146), Expect = 5.060e-9
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            AR  A + + A+   R     W PPVL CS L  +G+D VWE VLE RR++E GG L  RR  Q + W+   ++ Q+M
Sbjct:  221 ARRAARELSRAMRLLRPVHPDWRPPVLTCSGLSGDGLDRVWESVLEHRRMLERGGALAERRSEQRVSWMWDQVRDQVM 298          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: A0A087U4X6_STEMI (Methylmalonic aciduria type A-like protein, mitochondrial (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087U4X6_STEMI)

HSP 1 Score: 60.1 bits (144), Expect = 9.970e-9
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    7 ARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            AR   ++Y +AL F R++   W P VLR S+  KEG++ +WE++L+F+  + E G LE  R+ Q   W+  H++  L+
Sbjct:  274 ARLIQTEYVSALKFVRQRFRSWRPIVLRVSSRTKEGIENLWEEMLDFQETLLESGELELNRKNQYNKWLWTHVEHNLL 351          
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Match: UPI0018726DAD (methylmalonyl Co-A mutase-associated GTPase MeaB n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018726DAD)

HSP 1 Score: 59.7 bits (143), Expect = 1.260e-8
Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 1
Query:   22 SDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFRRIMEEGGLLEARRRRQAMHWVKRHLQQQLM 240
            ++Y  AL   R     W PPVL+CSAL  EG+DAVWE V + R IME  G   A+R  QA  W+   +   LM
Sbjct:  217 AEYYGALGLLRAPNPDWRPPVLKCSALLDEGIDAVWETVQKHREIMEASGARAAKRAAQAGAWMWAEISDGLM 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16820.4254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D9_ECTSI4.720e-3168.75Arginine/ornithine transport system ATPase n=1 Tax... [more]
UPI00115D4A751.500e-1041.77methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A4V2J6H0_9GAMM1.370e-942.65Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A7S3PDJ3_9STRA1.490e-946.38Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
UPI00166608E51.850e-946.38methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A7X1GZE6_9DELT3.540e-945.71Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A843RF41_9PROT4.900e-944.30Methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
UPI0004B6FC7D5.060e-942.31methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]
A0A087U4X6_STEMI9.970e-937.18Methylmalonic aciduria type A-like protein, mitoch... [more]
UPI0018726DAD1.260e-845.21methylmalonyl Co-A mutase-associated GTPase MeaB n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16820contigH-elongata_contig16820:100..616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog66429.JOFL01000001_gene4727
Preferred nameargK
KEGG koko:K07588
GOsGO:0003674,GO:0003824,GO:0003924,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111
EggNOG free text desc.LAO AO transport system ATPase
EggNOG OGs2GME8@201174,COG1703@1,COG1703@2
COG Functional cat.E
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-00_008700.1
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929983.2432425-CDS-H-elongata_contig16820:99..2341622929983.2432425-CDS-H-elongata_contig16820:99..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16820 100..234 +
1691679234.3674543-CDS-H-elongata_contig16820:99..2341691679234.3674543-CDS-H-elongata_contig16820:99..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16820 100..234 +
1622929983.2593534-CDS-H-elongata_contig16820:511..6161622929983.2593534-CDS-H-elongata_contig16820:511..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16820 512..616 +
1691679234.3889906-CDS-H-elongata_contig16820:511..6161691679234.3889906-CDS-H-elongata_contig16820:511..616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16820 512..616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16820.4254.1prot_H-elongata_contig16820.4254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16820 100..616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16820.4254.1

>prot_H-elongata_contig16820.4254.1 ID=prot_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RAARATASDYAAALSFTRRKLGCWAPPVLRCSALRKEGVDAVWEQVLEFR
RIMEEGGLLEARRRRQAMHWVKRHLQQQLM
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mRNA from alignment at H-elongata_contig16820:100..616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16820.4254.1 ID=mRNA_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at H-elongata_contig16820:100..616+ (Himanthalia elongata Himel1 dioecious)
AGGGCGGCTCGTGCGACCGCATCGGACTACGCCGCGGCGCTGAGCTTTAC GAGGCGAAAGCTTGGCTGTTGGGCTCCGCCGGTGTTGCGCTGCTCGGCCC TGCGGAAGGAGGGAGTTGATGCGGTTTGGGAACAGGTGAGGTTTGACTGG TTTTGTCCAGACACTTACGAAAAATCCCAGAGGTCAGACCAAGCTGCTGT CGAAAGTAGATCTCCCGGATAATGCAAGGGGACAGCGTGAACGACTCCGA CGAGCTCGACGTAGAGGCCCAGGGAAGAAGTGGATTGCGCGTTGTAGATG GTATGTCGAATCAAATGTGTCAGTAGATTACTTGTATAATATTTGCTGGT TTGTTTCGCTCGCTCTCAAAGAGGCACATTCGATCCGTTCATTGCGCCAT GCTACGTGACAGGTTCTGGAATTTCGTAGGATCATGGAAGAGGGGGGCCT GCTGGAGGCAAGGAGAAGGCGGCAGGCGATGCACTGGGTGAAGCGGCACC TGCAGCAGCAACTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig16820:100..616+

>mRNA_H-elongata_contig16820.4254.1 ID=mRNA_H-elongata_contig16820.4254.1|Name=mRNA_H-elongata_contig16820.4254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig16820:100..616+ (Himanthalia elongata Himel1 dioecious)
AGGGCGGCTCGTGCGACCGCATCGGACTACGCCGCGGCGCTGAGCTTTAC
GAGGCGAAAGCTTGGCTGTTGGGCTCCGCCGGTGTTGCGCTGCTCGGCCC
TGCGGAAGGAGGGAGTTGATGCGGTTTGGGAACAGAGGGCGGCTCGTGCG
ACCGCATCGGACTACGCCGCGGCGCTGAGCTTTACGAGGCGAAAGCTTGG
CTGTTGGGCTCCGCCGGTGTTGCGCTGCTCGGCCCTGCGGAAGGAGGGAG
TTGATGCGGTTTGGGAACAGGTTCTGGAATTTCGTAGGATCATGGAAGAG
GGGGGCCTGCTGGAGGCAAGGAGAAGGCGGCAGGCGATGCACTGGGTGAA
GCGGCACCTGCAGCAGCAACTGATGGTTCTGGAATTTCGTAGGATCATGG
AAGAGGGGGGCCTGCTGGAGGCAAGGAGAAGGCGGCAGGCGATGCACTGG
GTGAAGCGGCACCTGCAGCAGCAACTGATG
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