mRNA_H-elongata_contig16793.4237.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE) HSP 1 Score: 274 bits (700), Expect = 8.100e-75 Identity = 228/730 (31.23%), Postives = 331/730 (45.34%), Query Frame = 1
Query: 4 LGVGEDARKILDLLSRCQHSLDNNPWVCPPVPVVEKGIDAMKRYYGELGKTQPV-----LIDLRKVVFIGHSGAGKTSLIKSIKAGEG--RLALEEELESVGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLDKNKE-----LENRLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLADLQDRLKKYGEGMQWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRK--RSWIPLEELRLHWACVNNSPVINLPAKLRSD-------DPEFTLQSVMDMRERGGSLLK--HPEVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFG-ALPHQTFD----VLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLR--ADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVKDSKGRFPGDPIIRPGAIHHCRCQEE-------VASRLGTVL----PPSSPLENV 2070
+G E A + L S C L NPW+ PP VVEKG+ A++ Y ++ K + + L KVV +G S AGKTSL+ SI G G + E+ +VG+ + H + T V YD AG+V++YG+HQ FLT RALY+LVWD R K + + + WL L RAP STV+L A +KC S A VE + ++ + R S + ++ + SS +C GL ++ DR+ +PP+W LA+ LDA+RD +P +A R ++ V + R+ RS+ L W V V N+ +LRSD DP+ ++ + + E G +L+ + + VFLDV + +L PIL+HK + FAG R E LV GIL FAE LW + +P + D V+V LG+ LPL S PG R L+ N + ++ LV+MRLP+ E + +++R +D V W F P+GLVER++ASCH +G V CWR GA F + A + S+ N R L ++ FG + VW ALR+V S+ + D+PG+ W+ C + +F K S G F C C V RLG V+ PP+S +E V
Sbjct: 161 VGEAEHALRWLTRRSECLIVLGGNPWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRGLPTVGTPAEVSTVGIELLRHNLQG-----TAVEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVA---NKCDGSI------------EDFTGTAAVVEERVAVLRKEWRKARGFSSTRMDMDMTVLERSSLVSCLDGVGLQEMIDRIAAQSAASM-RVPPAWGLALTFLDALRDSRDPQQACRDCLSLGSRPKVGADREPGRSFFTENSLVEQWKGV----VQNVEGELRSDAEKMAVSDPDGAIEGALWISEFAGQVLRVANGDGVFLDVVWLSTALKPILDHKLVHKVFPQH--FAGMRNE----------LVHNGILRIAFAEHLWSDVMEITVPEEVLDALCRVIVNLGVALPLEPASLLPGSGRALATGRPNISR----QDMLVIMRLPETCGAEHELQELISDQMRRHSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRYDSAVGNERR--ILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLERLGKVVDTQAPPASDVEGV 847
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI) HSP 1 Score: 252 bits (644), Expect = 1.440e-66 Identity = 218/751 (29.03%), Postives = 346/751 (46.07%), Query Frame = 1
Query: 4 LGVGEDARKILDLLSRCQHS----LDNNPWVCPPVPVVEKGIDAMKRYYGELGKTQPV-----LIDLRKVVFIGHSGAGKTSLIKSI--KAGEGRLALEEELESVGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLDK-----NKELENRLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSER-STSVESLKLEYGIQLISSSPTCYGENGLADLQDRLKKYGEGMQWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSWIPLEELRLHWACVNNSPVINLPAKLRS-------DDPEFTLQSVMDMRERGGSLLK--HPEVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTF-----DVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHV--KEFLVLMRLP----QNAPCETRARFDAFNKLRADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGS---FALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVKDSKGRFPGDPIIRPG----AIHHCRCQEEVASRLGTVLPPSSPLENVFEPESEGEQGHVSFDEDG 2124
LG E A + + L + L +NPWV PP +V +G+ A+++Y ++ + + +++ KVV IG GAGKTSL+ SI + G + EE+ +VG+ ++ H NG V YD AG+V++YG+HQ FLT RALY+LVWD SR K +K + + +WL L R P S VLL A +KC S + VE S + ++ + R S V L + L+S C GL+++ R+ G ++PPSW LA+ LDA+RD +P A RR ++ + V + + S++ L W N V ++ +L S D ++ + + E G +L+ H +V+FLDV + +L PIL+HK + F L + +++LV G+L +FAE+LW + A P + VL LG+ LPL + R + A + + ++ LV+MRLP +N E + ++ V +W F HGLVER++ASCH +G+V CWR GA F ++ A D GG ++ +++ + S R L V FG +W ALR+V S+ ++ +PG+ W+ C H ++F ++ R GDPI+ A + C C + + VL L + + + + GH+ DE G
Sbjct: 318 LGQAEQALQFVARLGQLASGQNLRLQDNPWVMPPEGIVNEGLPAVEKYLRDVREAEEAGAEVKTLNVLKVVLIGSPGAGKTSLLNSIVNERGSRTVGTSEEVSTVGIELRRHHQRNG----RIVEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVA---NKCDGSL------------QEFVGTAGAVESSARRQLQEWQGNRKSPGVTKLTILQQPSLVS----CDDGGGLSEVIARVDAQG-ATSIVVPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRW----NDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLESH------FFPRSELT-----AMKDELVDNGVLRLKFAEYLWDLEMEAPPSEEVMDALCGVLHSLGVALPLGREE------RHTASAIDPAAAHGQIGRQDMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARADD--GGLNWLYSFVIRYDEEVGSGERV---LAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKTPIE---ARI-GDPILTDPDPRTAPNVCDCYTTEGNAMRLVL---ERLGTIIDTQKDDPFGHLHHDEGG 1011
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 243 bits (621), Expect = 5.800e-65 Identity = 211/699 (30.19%), Postives = 327/699 (46.78%), Query Frame = 1
Query: 1 GLGVGEDARKILDLLSRCQHSLDNNPWVCPPVPVVEKGIDAMKRYYGELGKTQPVLID-----LRKVVFIGHSGAGKTSLIKSIKAGEGRLA--LEEELESVGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFL---DKNKELENRLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLIS----SSPTCYGENGLADLQDRLKKYGEGMQWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHP---VESTRKRSWIPLEELRLHWACVNNSPVINLPAKLRSDDPEFTLQSVMDMRERGGSLLKHP--EVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQT-------FDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNT-TSWRHVK---EFLVLMRLPQNAPCETRARFDAFNKLRADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVKDSKGRFPGDPIIRPGAIHHCRC 2007
GLG EDA ++++ L + L NPW+ PP VVE G+ A+KRY ++ + + D L KVV +G + AGKTSL+ SI AG G + +VG+ ++ + ++ T V +D AG+V++ G+HQ FLT RALY+LV D +++ D +K + + + WL L RAP STV+L A D + A++ R R + ++A V H + +SK V L L G+ +S SP G L L R +PP+W LA+ V+ A+R P+ AAR + + P V ++I +EL W V ++ ++PA + S+ E L+ + + + G L+ + +FLDV + L+PIL+HK + + E W L + L GIL FA +W G + ++ F VL+KLG+ LP+ G L+ + R+T T+ V + LV+MRL + R FD V +WEF P+GL+ERL+ASCH +G V +CWR GA F +H+ + G + S TS + K FG + VW A+R+V S + ++PG+ W + C KH + L+ + V+ G DP++ A RC
Sbjct: 8 GLGETEDALRLVERLGDSLY-LHGNPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQD-----TKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGSIDK--FAETAE--RIQRRVRELVA-VWHEARGLRGRSKGH----VTDLTLLPGMSRVSCQEKGSPEASGLPALIALISRQAATAIH----VPPAWDLALEVIGALRASCNPIAAARDKLGLPNPLPADGVADVHAFAFISKDELSRKWRSVVDNLRDDVPAAMISNW-ESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQP-----------FENRW-LWMRDDLAGDGILRREFALHIWRESVGEVVMESEEVAEALFSVLIKLGVALPM-------GRRTLLAHSDRSTPTAPSDVSGSNDMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHD--MRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVG----DPLLPAAAPDARRC 661
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 193 bits (490), Expect = 4.210e-47 Identity = 206/697 (29.56%), Postives = 304/697 (43.62%), Query Frame = 1
Query: 28 KILDLLSRCQHS------LDNNPWVCPPVPVVEKGIDAMKRYYGELGKTQPVLI--DLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELES-VGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLDKNKELEN-------------RLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENG-------------------LAD------LQDRL--KKYGEGM---QWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSW-----IPLEELRLHWA----CVNNSPVINLPAKLRSDDPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRRNGG----GACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLRADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAG-GSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRIL 1920
++LD+L Q L NPWV PP P+V KG A++ Y+ +L +P I + KVV +G GAGKTSL +S+KA E E + ES V V+ + E + VR+YD AG+V + GL QMFLT RA+ VLV +A +F + + N R+ +WL ++ +R P++ V+L AT D LA + I A +EH+ + S ++ ++LE + L S T GE+G +AD L RL K G G+ Q ++P SW +A+ VL+A+ G +PVE R D T + I +E+L + W + S V AK L+ + +RE GSL+++ + +FLDV A L P+LNHK Q G G A L+ P +++ +L S+G+LE R A +W N L L LG+ PL P K +VL+RL + P D F L + W+ LG P G +E+++ C +G V + WR G V + G FA+ L++ SST N L + FG+ A W L +V+S DFPGL W+ + CP+H +L
Sbjct: 137 RLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDL-YAEPCRIKRSIVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVEAMELEG-----SSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCD-----------LAGGNAGK----IGARMEHACRRW---LSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESSTGSHELKGGWACDWRDMADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHGRDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAK-------NALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPN---GLSEYVLPALAFLGLTFPL---EDDP------------------AKGLVVLLRLKPDRPESVGHAIDTFC-LDHTPALSASWKIFLG-VPPGAIEKVLTRCCGLGGV--RTFWRYGVLVHGGLGEVHVGRRGIFAVVLEY--SSTDN-----ELAAQIFGDISTPAPWVVLSYVMSAVSLMLLDFPGLRWRGSLTCPQHGDTML 767
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 185 bits (469), Expect = 2.950e-44 Identity = 197/723 (27.25%), Postives = 300/723 (41.49%), Query Frame = 1
Query: 1 GLGVGEDARKILDLLSRCQHSLDNNPWVCPPVPVVEKGIDAMKRYYGELGKT--QPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELESVGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRF--------------LDKNKELENRLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLADLQDRLKKYGEGMQW---------------------------------LIPPSWRLAIVVLDAVRDGVEPVEAARRHM-------NHEDLHPVESTRKRS--WIPLEELRLHWACVNNSPVINLPAKLRSDD-----PEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRR--NGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLRADWGVV--TEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVKDSKGRFPGD 1968
G + + +L LSR + NPW PP VV KGI A++ Y+ +L PV + KVV +G GAGKTSL +S++ G E +V + V+ NG +R+YD AG+V + GL QMFL+ RA+ +LV D F D +K E R+ +WL +L R P S V++ AT D LA + R AI E +S + ++ +E G+ L S P E+G A L R K E W ++P SW +A+ VLDA+ G PVE+A++++ ++ P R + + +L W N V A L D P+ L+ + +RE GSL++H VFLDV A L P+LNH+ G + G L++ +++ +L G+LE A LW + L + L LG+ PL P + +VL+RL + P + D F R D V +W+ LG P G +E+++ C +G + + WR G V + +A +FAL ++++ + +K +G+ A W AL F IS + +FPGL W+A + CP+HE + A + PGD
Sbjct: 224 GNALPKQLEALLATLSRLGFLVHENPWQEPPEAVVSKGISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKTSLRQSLRTGRPTPTSGSEESTVQIDVEQMDV-NGV----TLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCD-------LAAGMGTDAAGRIEGAI-----------GEWLESWSGAGMNAVHVEDGVSLTSCFPPTPNEDGGAALGKR-KSPDEDSTWACDWREGVSVESQPSLLHRVMYNSKGNVRGASLVLPRSWNIALEVLDALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKW----NEVV----AALEGDGVSVVKPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPD---GLSNYVLPALDSLGLTYPL---DDDPAEG------------------LVVLLRLDEKRPEDVGKELDDF---RRDHTAVLSVKWKVFLG-VPPGAIEKMLTRCCRLGTL--RTFWRFGV-LVQGSLGGGIAARTFALVVEYSHDKCE-------VDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATR------PGD 870
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.530e-43 Identity = 193/678 (28.47%), Postives = 289/678 (42.63%), Query Frame = 1
Query: 28 KILDLLSRCQH----SLDNNPWVCPPVPVVEKGIDAMKRYYGELGKTQPVLIDLR--KVVFIGHSGAGKTSLIKSIKAGEGRLALEEELES-VGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRF--------------LDKNKELENRLKEWLVTLQQRAPHSTVLLCATHKD----------KCVPSTLLAKSLAWFRRSRSIEAILADV-EHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLAD-----LQDRL--KKYGEGM---QWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSW-----IPLEELRLHWACVNNSPVINLPAK-LRSDDPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRRNGG----GACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLRADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKH 1905
++LD+L R + +LD+NPW PP +V KG ++ Y+ +L +P + K++ +G GAGKTSL KS+KA E E + ES V V+ + E + +R+YD AG+V + GL QMFLT RA+ V+V +A F D K E R+ +WL ++ +R P + V+L AT D K + +W R + V S N ERST ++++ TC +G D L RL K G G+ Q +IP SW +A+ VL+A+ G +PVE + D T I E+LR W + L + + + + L+ + +RE GSL++H VFLDV A L P+LNHK + G G LE P +++ +L ++G+LE R A LW N L + LG L PL++ G +VL+RL + P D F L + W+ LG P G +E+++ C +G V + WR G V G FA+ L+++ S L + FG+ A W AL +V+S DFPGL + + CP+H
Sbjct: 282 RLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDL-YAEPCRVQRSSVKIILVGQEGAGKTSLRKSMKAKEATPTGEWKEESTVFADVERMELEG-----SSIRVYDCAGQVAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCETGGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCTTNVCEDGERSTRNQAME---------GGWTCDWRDGKDDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLEALERGRDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKW----QEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPN---GLSEYVIPTIASLG--LTFPLENDPAGG-------------------LVVLLRLEHDRPELVGKVIDTFC-LDQTPALRASWKIFLG-VPAGAIEKVLTRCCSLGGV--QTFWRSGV-LVHGGVGEQDRSGIFAVVLEYSPSDNE-------LTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQH 904
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 178 bits (451), Expect = 4.560e-42 Identity = 186/702 (26.50%), Postives = 295/702 (42.02%), Query Frame = 1
Query: 1 GLGVGEDARKILDLLSRCQHSLDNNPWVCPPVPVVEKGIDAMKRYYGELGKT--QPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELESVGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRF--------------LDKNKELENRLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLADLQDR------------------------------LKKYGE--GMQWLIPPSWRLAIVVLDAVRDGVEPVEAARRHM-------NHEDLHPVESTRKRS--WIPLEELRLHWACVNNSPVINLPAKLRSD-----DPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRR--NGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLRADWGVV--TEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHE 1908
G + + +L LS+ + NPW PP VV KGI A++ Y+ +L PV + KV+ +G GAGKTSL +S++ G E +V + V+ NG +R+YD AG+V + GL QMFL+ RA+ +LV D F D NK E R+ +WL +L R P S V++ AT D LA +A +R +E S + ++++E G+ L S + E+G A L R GE G ++P SW + + VLDA+ G +PVE+A++ + ++ P R + + +L W V A L D +P+ L+ + +RE GSL++H VFLDV A L P+LNH+ G + G L++ +++ +L G+LE A LW + L + L LG+ PL P + +VL+RL + P + D F R D V +W+ LG P G +E+++ C +G + + WR G V + +A +FAL ++++ + + ++ +G+ A W AL + IS + +FPGL W+A + CP+HE
Sbjct: 188 GSSLPKQLEALLATLSQLGLHVHTNPWQEPPEAVVSKGIPAVREYFTDLFAEGIAPVGRKMIKVILVGQEGAGKTSLRQSLRTGRPTPTSGPEESTVQIDVEQMDV-NGV----TLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDTGAFGQRDGSLTDSDQLKKDLNKLQELRVCDWLRSLSFRIPDSDVVMVATKCD-------LAAGMAADAAARMAGGAGNWIE-----------SWSDAQMTAVRVEDGVNLTSCFASTPNEDGGAALGTRESPEEQSTWACDWSDGMCVESQPSLLHRVMYNNKGELRGASLVLPRSWNIGLGVLDALGSGRDPVESAQQMVLASGGPKGAAEVVPAVYQRNQGVGGLTRADLSTKWNDV--------VAALEEDGVSIVNPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHRDDEDPLRGDVSLGDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWPD---GLSNYVLPTLDSLGLTYPL---DDDPAEG------------------LVVLLRLDEKRPEDVGKELDDF---RRDHTAVLSVKWKIFLG-VPPGAIEKMLTRCCRLGTL--RTFWRFGV-LVQGSLGGGMAAKTFALLIEYSHDTCE-------VDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHE 820
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 174 bits (440), Expect = 9.250e-41 Identity = 189/663 (28.51%), Postives = 284/663 (42.84%), Query Frame = 1
Query: 19 DARKILDLLSRCQH-SLDNNPWVCPPVPVVEKGIDAMKRYYGEL--GKTQPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELES-VGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLDKNK-ELEN-RLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLADLQDRLKKYGEGMQWL--------------------------IPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSWIPLEELRLHWACVNNSPVINLPAKLRSDDPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKLRA-DWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHE 1908
D ++LD+ + L NPW PP +V G+ A++ YY + G T V L KVV IG GKTSL +SI G + +ES V V V++HK + +R++D AG+V +YGL Q+FLT RA+Y+LVWDA++ + + LE+ + WL L R P++ V+L D+ V + R +++ + K H Q L LE G+ L+S + +C G + A +G G W +PPS+RLA+ +L+ E ++RR + TR + LEE + H A V P PE + + +R+ G L+++ VFLDVE FA L P+ +H RR+ G G R+ L++ +L ++ + E + AE LW + PH L G+ PLP + P ++L+R+ P E R + N+ R D + FSLG P G VERL+A C H+G WR GA V + A L F+LSL +++ L V+ G E W AL V+S +FPGL + CP+H+
Sbjct: 394 DLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPL-KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGH-----PIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPNANVILVGNKWDRVVRTRGTVADDVECESRRWLKSWME------KAHGHQPHG--------LSLEDGVSLVSCAQSCLGVSAPA--------FGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLE------ELASSSRRKAE-------QRTRGITRADLEE-KWH-AKVAELNGAGTPVAA----PEAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSH---RRDSYGDIDLGGIRVTN---LASLRRLDNEHVFEPQLAEELWTPELA--PHLLL-ALKSAGLTFPLP---NDPNGG------------------LVILLRMDTTRPPEYSIRREEANQARKYDLTLSVACSFSLGLPP-GFVERLLARCCHLG--YPYPFWRYGALIVGNGAEKGL----FSLSLDYSEHDNM-------LKVEVLGGGEEVHAWAALSKVLSVMIKMLSEFPGLPCEPIFFCPQHK 965
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.690e-39 Identity = 191/686 (27.84%), Postives = 295/686 (43.00%), Query Frame = 1
Query: 64 LDNNPWVCPPVPVVEKGIDAMKRYYGEL--GKTQPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELES-VGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLDKNK-ELEN-RLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQSKSERSTSVESLKLEYGIQLISSSPTCYGENGLADLQDRLKKYGEGMQWL--------------------------IPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSWIPLEELRLHWACVNNSPVINLPAKLRSDDPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARFDAFNKL-RADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVKDSKGRFPGDPIIRPGAIHHCR-CQEEVA 2022
L NPW PP +V G+ A++ YY + G T V L KVV IG GKTSL +SI G + +ES V V V++HK + +R++D AG+V +YGL Q+FLT RA+Y+LVWDA++ + + LE+ + WL L R P + V+L D+ V + R +++ + K H Q L LE G+ L+S + + G + A +G G W +PPS+RLA+ +L+ E ++RR + TR + LEE + H A V P PE + + +R+ G L+++ VFLDVE FA L P+ +H RR+ G G R+ L++ +L ++ + E + AE LW + PH L G+ PLP + P ++L+R+ P E + + +K AD + FSLG P G VERL+A C H+G WR GA V + A L F+LS+++++ L ++ FG E W AL V+S +FPGL + CP+H+ + + ++ + GR PG ++ + C+ CQ+ A
Sbjct: 503 LSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPL-KVVIIGKETVGKTSLRRSITTGGPCMTQNGGVESTVHVDVEDHKVDGH-----PIRIFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPDANVILVGNKWDRVVRTRGTVADDVECESRRWLKSWME------KAHGHQPHG--------LSLEDGVSLVSCAQSGLGVSAPA--------FGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVTMHLPPSYRLALEMLE------ELASSSRRKAE-------QRTRGITRADLEE-KWH-AKVAELNGAGTPVAA----PEAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSH---RRDSYGDIDLGGIRVTN---LASLRRLDNEHVFEPQLAEELWTPELA--PHLLL-ALKSAGLTFPLP---NDPNGG------------------LVILLRMDTTRPPEYGIKLEQVHKASEADLRLTVACSFSLGLPP-GFVERLLARCCHMGYPFP--FWRYGALIVGNGAEKGL----FSLSVEYSEEDK-------ILALEVFGGCEEVHAWAALSKVLSVMIKMLSEFPGLPCELMFFCPQHKTKGMP----IRTTDGR-PGSCLVEES--YFCQLCQDREA 1090
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 162 bits (410), Expect = 3.770e-37 Identity = 193/699 (27.61%), Postives = 300/699 (42.92%), Query Frame = 1
Query: 31 ILDLLSRCQH-SLDNNPWVCPPVPVVEKGIDAMKRYYGEL--GKTQPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEELES-VGVSVQNHKFENGCEGETDVRLYDLAGKVEHYGLHQMFLTERALYVLVWDASRFLD-KNKELEN-RLKEWLVTLQQRAPHSTVLLCATHKDKCVPSTLLAKSLAWFRRSRSIEAILADVEHSIKEHNEQ-SKSERSTSVESLKLEYGIQLISSSPTCYG--------------ENGLADLQDRLKKYGEG----MQWLIPPSWRLAIVVLDAVRDGVEPVEAARRHMNHEDLHPVESTRKRSWIPLEELRLHWACVNNSPVINLPAKLRSDDPEFTLQSVMDMRERGGSLLKHPEVVFLDVEDFALSLAPILNHKTQRRNGGGACIFAGRRLEQPWQLSAEEKLVSKGILETRFAEFLWGNDFGALPHQTFDVLVKLGILLPLPLQSHTPGDHRFLSRAWRNTTSWRHVKEFLVLMRLPQNAPCETRARF---DAFNKLRADWGVVTEWEFSLGRTPHGLVERLVASCHHIGNVVKNSCWRRGACFVAHNAAVDLAGGSFALSLQFTQSSTSNLRTGGTLVVKAFGNREGRAVWGALRFVISTAWSSFHDFPGLSWQARVMCPKHEGRILHFLAGVK-DSKGRFPGDPIIRPGAIHHCRCQEEVASRLGTV 2040
+LD L R S+ NPW PP +V GI A++ Y+ + G T V L KVV +G GKTSL +SIK G+ + ES V V V++H + +R++D AG+V +YGL Q+FLT RA+Y+LVWDA++ + + LE+ + WL L R P ++V+L D+ V + RR+ A+ DVEH ++ E + R + LE G+ L+S + + G + L R+ + +P S+RLA+ +L E + + R + TR + LEE N ++ A P+ + + +R+ G L+++ VFLDVE FA L P+ HK R+ G G R+ + + ++L + +LE + AE LWG PH L G+ PL S+ ++L+R+ P + + D NK D +V E F LG P G VERL+A C H+G + WR GA V A + F+LSL+++++ L V+ G W AL V+S +FPGL + CP LH G+K +K PG ++ G C+ ++ ++ +G V
Sbjct: 326 LLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPL-KVVIVGKETVGKTSLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGH-----PIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLAIAPWLRHLTFRVPDASVILVGNKCDRVVRT----------RRT----AVAVDVEHESRQWLESWIEIARGHQPRGISLEDGVSLVSCAASGVGAVAPSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEML-------EELASCSRSKTE------QQTRGITRAILEEKWQAKVAEMNRAGTSVAA------PDAAMAGAILIRKWEGGLVEYGSYVFLDVEWFATVLDPLFCHK---RDSYGKIDLGGIRV---MDVDSLDRLDEEHVLEPQLAEDLWGPVLA--PHLLL-ALKSAGLTFPLSNDSNGG---------------------LVILLRMDTKPPPDYGIKLKEKDQANKF--DLRLVVECSFRLGLPP-GFVERLLARCCHLG--LPYPFWRYGALIVGKGAEERM----FSLSLEYSEARK-------ILTVEVSGGHTEVFAWAALSKVLSVTIKMLLEFPGLPCRTTFFCP------LHKTNGMKIRTKDARPGSCLV--GESDFCKLCQDRSAAVGLV 931 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16793.4237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16793.4237.1 >prot_H-elongata_contig16793.4237.1 ID=prot_H-elongata_contig16793.4237.1|Name=mRNA_H-elongata_contig16793.4237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=779bp MKRYYGELGKTQPVLIDLRKVVFIGHSGAGKTSLIKSIKAGEGRLALEEEback to top mRNA from alignment at H-elongata_contig16793:842..7554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16793.4237.1 ID=mRNA_H-elongata_contig16793.4237.1|Name=mRNA_H-elongata_contig16793.4237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6713bp|location=Sequence derived from alignment at H-elongata_contig16793:842..7554+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16793:842..7554+ >mRNA_H-elongata_contig16793.4237.1 ID=mRNA_H-elongata_contig16793.4237.1|Name=mRNA_H-elongata_contig16793.4237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4674bp|location=Sequence derived from alignment at H-elongata_contig16793:842..7554+ (Himanthalia elongata Himel1 dioecious)back to top |