mRNA_H-elongata_contig166312.4166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig166312.4166.1
Unique NamemRNA_H-elongata_contig166312.4166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.340e-39
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGFQEEV  LV SCP GRQTLLFSATMNTKVD LA+LALNKPVRVKASP+NSAPQRL QEFVRIRQSREQDREAILLSLL R
Sbjct:  461 DEADRLLELGFQEEVAELVKSCPIGRQTLLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLLTR 550
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 7.970e-31
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLE+GF+EEV  LV  CP GRQT+LFSATMNTKV  L  LALNKPVRV A+P NS   RL QEFVR+RQSRE DREAILLSLL+R
Sbjct:  439 DEADRLLEMGFEEEVHTLVEHCPRGRQTMLFSATMNTKVQGLIKLALNKPVRVVATPPNSVNTRLVQEFVRVRQSREMDREAILLSLLSR 528
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A1W0A5F9_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5F9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.210e-26
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGF EEV+ LVG CP  RQT+LFSATM +KVD L  L++ +PVR+   PL    Q L QEFVRIR++RE+DREAILL+L  R
Sbjct:  368 DEADRLLELGFTEEVQELVGMCPIARQTMLFSATMTSKVDELIKLSMKRPVRISTDPLFDMAQNLVQEFVRIRRTREEDREAILLALCTR 457
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A7S2WP83_9STRA (Hypothetical protein (Fragment) n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WP83_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.770e-26
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGF +EV  LV  CP  RQTLLFSATM T V+ LA L+LN+PVRV+A PL     RL QEFVRIR SRE+DREA+LL+L  R
Sbjct:  376 DEADRLLELGFMDEVMELVKFCPKSRQTLLFSATMTTSVNQLAELSLNRPVRVQADPLYDMAARLVQEFVRIRPSRERDREAMLLALCTR 465
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A7S1C375_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C375_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.750e-26
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGF EEV+ +V +CP GRQTL+FSATM   VD LA ++L +PVRV A PL    QRL QEF+R+R  RE DREAI++SL+ R
Sbjct:  221 DEADRLLELGFTEEVEEVVKACPKGRQTLMFSATMTDDVDKLAKMSLKRPVRVSADPLYDLSQRLVQEFIRVRDDREDDREAIMVSLVTR 310
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A1V9ZGW0_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGW0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.070e-25
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGF EEV+ LVG CP  RQT+LFSAT+ +KVD L  L++ +PVR+   PL    Q L QEFVRIR +RE+DREAILL+L  R
Sbjct:  388 DEADRLLELGFTEEVQELVGMCPVARQTMLFSATLTSKVDELIKLSMKRPVRISTDPLYDMAQNLVQEFVRIRPTREEDREAILLALCTR 477
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A067C0U9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0U9_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 1.460e-25
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGF EEV+ LVG CP  RQT+LFSAT+ +KVD L  L++ +PVR+   PL    Q L QEFVRIR +RE+DREAILL+L  R
Sbjct:  380 DEADRLLELGFTEEVQELVGMCPLARQTMLFSATLTSKVDELIKLSMKRPVRISTDPLYDMAQNLVQEFVRIRPTREEDREAILLALCTR 469
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A6A5AY44_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AY44_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.050e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGFQEEV+ LV  CP  RQTLLFSAT+ +KVD L  L++ +PVR+   PL    Q L QEFVRIR +RE DREAILL+L  R
Sbjct:   17 DEADRLLELGFQEEVQELVKFCPVARQTLLFSATLTSKVDELIKLSMKRPVRISTDPLFDMAQHLVQEFVRIRPTREDDREAILLALCTR 106
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BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A418DL23_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DL23_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.170e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGFQEEV+ LV  CP  RQTLLFSAT+ +KVD L  L++ +PVR+   PL    Q L QEFVRIR +RE DREAILL+L  R
Sbjct:  386 DEADRLLELGFQEEVQELVKFCPVARQTLLFSATLTSKVDELIKLSMKRPVRISTDPLFDMAQHLVQEFVRIRPTREDDREAILLALCTR 475
[Close]
BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Match: A0A397EHJ6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EHJ6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.570e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKPVRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR 270
            ++ADRLLELGFQEEV+ LV  CP  RQTLLFSAT+ +KVD L  L++ +PVR+   PL    Q L QEFVRIR +RE DREAILL+L  R
Sbjct:  325 DEADRLLELGFQEEVQELVKFCPVARQTLLFSATLTSKVDELIKLSMKRPVRISTDPLFDMAQHLVQEFVRIRPTREDDREAILLALCTR 414
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166312.4166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJM8_ECTSI1.340e-3987.78DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YJC4_9STRA7.970e-3173.33P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1W0A5F9_9STRA4.210e-2662.22DEAD/DEAH box RNA helicase n=1 Tax=Thraustotheca c... [more]
A0A7S2WP83_9STRA5.770e-2665.56Hypothetical protein (Fragment) n=2 Tax=labyrinthu... [more]
A0A7S1C375_9STRA7.750e-2661.11Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1V9ZGW0_9STRA1.070e-2561.11DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna... [more]
A0A067C0U9_SAPPC1.460e-2561.11Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6A5AY44_9STRA2.050e-2562.22Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A418DL23_9STRA2.170e-2562.22Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397EHJ6_9STRA3.570e-2562.22Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166312contigH-elongata_contig166312:467..989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.5e-34
Seed eggNOG ortholog2880.D7FJM8
Preferred nameDDX27
KEGG koko:K13181
GOsGO:0000027,GO:0000166,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0070035,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0338@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-09_000390.1
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.4652483-CDS-H-elongata_contig166312:466..6131622929973.4652483-CDS-H-elongata_contig166312:466..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166312 467..613 +
1691679230.2760303-CDS-H-elongata_contig166312:466..6131691679230.2760303-CDS-H-elongata_contig166312:466..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166312 467..613 +
1622929973.479392-CDS-H-elongata_contig166312:863..9891622929973.479392-CDS-H-elongata_contig166312:863..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166312 864..989 +
1691679230.2857459-CDS-H-elongata_contig166312:863..9891691679230.2857459-CDS-H-elongata_contig166312:863..989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig166312 864..989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166312.4166.1prot_H-elongata_contig166312.4166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig166312 467..989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig166312.4166.1

>prot_H-elongata_contig166312.4166.1 ID=prot_H-elongata_contig166312.4166.1|Name=mRNA_H-elongata_contig166312.4166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
EQADRLLELGFQEEVKGLVGSCPAGRQTLLFSATMNTKVDHLAALALNKP
VRVKASPLNSAPQRLAQEFVRIRQSREQDREAILLSLLAR*
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mRNA from alignment at H-elongata_contig166312:467..989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig166312.4166.1 ID=mRNA_H-elongata_contig166312.4166.1|Name=mRNA_H-elongata_contig166312.4166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=523bp|location=Sequence derived from alignment at H-elongata_contig166312:467..989+ (Himanthalia elongata Himel1 dioecious)
GAACAGGCGGATCGACTCCTGGAGCTCGGTTTCCAAGAGGAAGTCAAGGG
GCTCGTGGGGTCGTGCCCCGCAGGTCGGCAGACTCTTTTATTTTCGGCGA
CGATGAACACCAAGGTCGACCATCTCGCCGCCCTGGCGCTGAACAAGGTA
CGGAGTGTGCTCGTCCGAGGAAACGTTTCTTTGGCGAGGTGGGGTGGGGG
GGCATGGAGTTTTGATTTACGTCGAACTGCACGAGAGCTACCGTTGGTGC
GGTGGTGCCCGATTGAATGAGGAGGAGGAGGCGGGGGGAGGTTTAGGGGA
GGGGATATATTGAGAATAATACAGGCATTAATAATATTAATAGTAACCCT
TTCTGTCTTTGAATCGTCCCGTTCTGTGTTTTGATTGGTCCGTTCAGCCC
GTGAGGGTAAAGGCATCGCCCTTAAACTCTGCCCCCCAGCGACTGGCGCA
GGAGTTCGTTCGGATTCGGCAGAGCCGCGAGCAAGATCGGGAAGCAATCC
TTCTCTCTCTCTTGGCAAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig166312:467..989+

>mRNA_H-elongata_contig166312.4166.1 ID=mRNA_H-elongata_contig166312.4166.1|Name=mRNA_H-elongata_contig166312.4166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig166312:467..989+ (Himanthalia elongata Himel1 dioecious)
GAACAGGCGGATCGACTCCTGGAGCTCGGTTTCCAAGAGGAAGTCAAGGG
GCTCGTGGGGTCGTGCCCCGCAGGTCGGCAGACTCTTTTATTTTCGGCGA
CGATGAACACCAAGGTCGACCATCTCGCCGCCCTGGCGCTGAACAAGGAA
CAGGCGGATCGACTCCTGGAGCTCGGTTTCCAAGAGGAAGTCAAGGGGCT
CGTGGGGTCGTGCCCCGCAGGTCGGCAGACTCTTTTATTTTCGGCGACGA
TGAACACCAAGGTCGACCATCTCGCCGCCCTGGCGCTGAACAAGCCCGTG
AGGGTAAAGGCATCGCCCTTAAACTCTGCCCCCCAGCGACTGGCGCAGGA
GTTCGTTCGGATTCGGCAGAGCCGCGAGCAAGATCGGGAAGCAATCCTTC
TCTCTCTCTTGGCAAGGTAACCCGTGAGGGTAAAGGCATCGCCCTTAAAC
TCTGCCCCCCAGCGACTGGCGCAGGAGTTCGTTCGGATTCGGCAGAGCCG
CGAGCAAGATCGGGAAGCAATCCTTCTCTCTCTCTTGGCAAGGTAA
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