prot_H-elongata_contig165430.4119.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig165430.4119.1
Unique Nameprot_H-elongata_contig165430.4119.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0
Query:    8 ASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            A LS+MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR
Sbjct: 2230 ACLSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 2273          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0
Query:    8 ASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            A LS+MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR
Sbjct: 2335 ACLSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 2378          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: W7T133_9STRA (Dna polymerase zeta subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T133_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.830e-15
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 0
Query:    6 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRYN 53
            ++ +L V+D+LDLLGRTSEMAR+FGIDFFSVL+RGSQYRVEAV+ R +
Sbjct:   55 SRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVS 102          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A7S0NZV1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZV1_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.810e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            TQ SL V D L+L+ RTSE+AR+FGIDF+SVL+RGSQYRVE+++LR
Sbjct:   16 TQLSLEVADALELISRTSELARVFGIDFYSVLTRGSQYRVESMLLR 61          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1W0A9K2_9STRA (DNA polymerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9K2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            T+ +L VMD++ L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  829 TELNLKVMDRMQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 874          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A067D8T0_SAPPC (DNA polymerase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D8T0_SAPPC)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            T+ +L +MD+L L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  844 TEVTLKLMDRLQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 889          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: T0R4D0_SAPDV (DNA polymerase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R4D0_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            T+ +L +MD+L L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  848 TEVTLKLMDRLQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 893          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1D1ZNX4_AUXPR (DNA polymerase (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNX4_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-13
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    9 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            +LS++D+LD++GRTSE+AR FGIDFFSVLSRGSQYRVE++MLR
Sbjct:   99 NLSLLDRLDVVGRTSELARAFGIDFFSVLSRGSQYRVESMMLR 141          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1D2AAG3_AUXPR (DNA polymerase zeta catalytic subunit n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AAG3_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 3.020e-13
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    9 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 51
            +LS++D+LD++GRTSE+AR FGIDFFSVLSRGSQYRVE++MLR
Sbjct: 1618 NLSLLDRLDVVGRTSELARAFGIDFFSVLSRGSQYRVESMMLR 1660          
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A7S3VKE1_DUNTE (DNA polymerase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKE1_DUNTE)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0
Query:    9 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRYNILYCNIL 60
            SL +MD LDL+GRT+E+AR FGIDFFSVL+RGSQYRVE++MLR +   CN L
Sbjct:  461 SLLMMDSLDLIGRTAELARTFGIDFFSVLTRGSQYRVESLMLRLSHA-CNYL 511          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE2.600e-1795.45DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI2.600e-1795.45DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
W7T133_9STRA1.830e-1572.92Dna polymerase zeta subunit n=1 Tax=Nannochloropsi... [more]
A0A7S0NZV1_9EUKA1.810e-1369.57Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A1W0A9K2_9STRA2.200e-1376.09DNA polymerase n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A067D8T0_SAPPC2.200e-1376.09DNA polymerase n=1 Tax=Saprolegnia parasitica (str... [more]
T0R4D0_SAPDV2.200e-1376.09DNA polymerase n=1 Tax=Saprolegnia diclina (strain... [more]
A0A1D1ZNX4_AUXPR2.990e-1376.74DNA polymerase (Fragment) n=2 Tax=Auxenochlorella ... [more]
A0A1D2AAG3_AUXPR3.020e-1376.74DNA polymerase zeta catalytic subunit n=3 Tax=Auxe... [more]
A0A7S3VKE1_DUNTE4.100e-1369.23DNA polymerase (Fragment) n=1 Tax=Dunaliella terti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030559DNA polymerase zeta catalytic subunitPANTHERPTHR45812FAMILY NOT NAMEDcoord: 7..52
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165430contigH-elongata_contig165430:941..1123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165430.4119.1mRNA_H-elongata_contig165430.4119.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig165430 941..1123 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig165430.4119.1 ID=prot_H-elongata_contig165430.4119.1|Name=mRNA_H-elongata_contig165430.4119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FSFWWTQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVML
RYNILYCNIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030559PolZ_Rev3
IPR012337RNaseH-like_sf