mRNA_H-elongata_contig165357.4115.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20 Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKE 162
PNMAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+ YVEM LFLNGN+E
Sbjct: 725 PNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQE 778
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 2.680e-12 Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
P +ARVARV+ PASAAVLERDFS AGR++T SRS + +YVEM +FL+GN
Sbjct: 619 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGN 670
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 2.170e-11 Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVEMTLFLNGN 156
P +ARVARV+ PASAAVLERDFS AGR++T SR + + YVEM LFL+GN
Sbjct: 7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGN 59
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 8.300e-11 Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
P +ARVARV++ ASAAVLE DFS AGR++T SRS + +YVEM LFL+GN
Sbjct: 392 PLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGN 443
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 6.280e-9 Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
VARVL S+P+S+A +ERDF TAGR++T RS LA V+MT FLN N+
Sbjct: 42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNR 89
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM) HSP 1 Score: 55.8 bits (133), Expect = 1.540e-8 Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
VARV+ S+P+S+A +ERDF TAGR++T R+ LA V+MT FLN N+
Sbjct: 10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNR 57
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93) HSP 1 Score: 56.2 bits (134), Expect = 5.250e-8 Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
P++AR+AR +LS+PA++A ERDFSTAG +I+ RS+L+ E V+ LFL+ N
Sbjct: 182 PSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 5.930e-8 Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
P +AR ARV+ PASAAVLERDF+ A ++ SRS +YVEM LFL+GN
Sbjct: 559 PLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGN 610
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: UPI001469E3E5 (zinc finger BED domain-containing protein DAYSLEEPER-like n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469E3E5) HSP 1 Score: 53.1 bits (126), Expect = 3.530e-7 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
PN+A +AR +LS+PAS+A ERDFSTAG +++ RS+L V+ LFL+ N
Sbjct: 110 PNVAHIARSILSIPASSAASERDFSTAGFVVSERRSQLKPATVDDILFLHSN 161
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI) HSP 1 Score: 52.8 bits (125), Expect = 8.570e-7 Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
VARVL S+P+S+A +ERDF TAGR++T RS L V+M ++LN N+
Sbjct: 158 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNR 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165357.4115.1 >prot_H-elongata_contig165357.4115.1 ID=prot_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNback to top mRNA from alignment at H-elongata_contig165357:1140..1301+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165357.4115.1 ID=mRNA_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig165357:1140..1301+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165357:1140..1301+ >mRNA_H-elongata_contig165357.4115.1 ID=mRNA_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig165357:1140..1301+ (Himanthalia elongata Himel1 dioecious)back to top |