mRNA_H-elongata_contig165357.4115.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165357.4115.1
Unique NamemRNA_H-elongata_contig165357.4115.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNKE 162
            PNMAR ARVLLSVPAS+AVLERDFSTAGRLITG+RSRL+  YVEM LFLNGN+E
Sbjct:  725 PNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQE 778          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.680e-12
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
            P +ARVARV+   PASAAVLERDFS AGR++T SRS +  +YVEM +FL+GN
Sbjct:  619 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGN 670          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.170e-11
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRL-AGEYVEMTLFLNGN 156
            P +ARVARV+   PASAAVLERDFS AGR++T SR  + +  YVEM LFL+GN
Sbjct:    7 PLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGN 59          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 8.300e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
            P +ARVARV++   ASAAVLE DFS AGR++T SRS +  +YVEM LFL+GN
Sbjct:  392 PLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGN 443          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.280e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
            VARVL S+P+S+A +ERDF TAGR++T  RS LA   V+MT FLN N+
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNR 89          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 55.8 bits (133), Expect = 1.540e-8
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
            VARV+ S+P+S+A +ERDF TAGR++T  R+ LA   V+MT FLN N+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNR 57          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: UPI0019661A93 (zinc finger BED domain-containing protein DAYSLEEPER-like isoform X2 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019661A93)

HSP 1 Score: 56.2 bits (134), Expect = 5.250e-8
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
            P++AR+AR +LS+PA++A  ERDFSTAG +I+  RS+L+ E V+  LFL+ N
Sbjct:  182 PSLARIARSILSIPATSATSERDFSTAGCVISERRSQLSPETVDDVLFLHSN 233          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 5.930e-8
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
            P +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YVEM LFL+GN
Sbjct:  559 PLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGN 610          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: UPI001469E3E5 (zinc finger BED domain-containing protein DAYSLEEPER-like n=2 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469E3E5)

HSP 1 Score: 53.1 bits (126), Expect = 3.530e-7
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    1 PNMARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN 156
            PN+A +AR +LS+PAS+A  ERDFSTAG +++  RS+L    V+  LFL+ N
Sbjct:  110 PNVAHIARSILSIPASSAASERDFSTAGFVVSERRSQLKPATVDDILFLHSN 161          
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Match: A0A0W8D5H4_PHYNI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D5H4_PHYNI)

HSP 1 Score: 52.8 bits (125), Expect = 8.570e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   16 VARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGNK 159
            VARVL S+P+S+A +ERDF TAGR++T  RS L    V+M ++LN N+
Sbjct:  158 VARVLFSMPSSSAQIERDFGTAGRMVTPERSSLEPYNVDMAMYLNCNR 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165357.4115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE6.980e-2085.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.680e-1265.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE2.170e-1164.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE8.300e-1163.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA6.280e-960.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM1.540e-856.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
UPI0019661A935.250e-853.85zinc finger BED domain-containing protein DAYSLEEP... [more]
D8LBK4_ECTSI5.930e-857.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI001469E3E53.530e-751.92zinc finger BED domain-containing protein DAYSLEEP... [more]
A0A0W8D5H4_PHYNI8.570e-754.17Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165357contigH-elongata_contig165357:1140..1301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size162
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.7149115-UTR-H-elongata_contig165357:1139..11451622929967.7149115-UTR-H-elongata_contig165357:1139..1145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165357 1140..1145 +
1691679227.8088746-UTR-H-elongata_contig165357:1139..11451691679227.8088746-UTR-H-elongata_contig165357:1139..1145Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165357 1140..1145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.7317505-CDS-H-elongata_contig165357:1145..13011622929967.7317505-CDS-H-elongata_contig165357:1145..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165357 1146..1301 +
1691679227.8167977-CDS-H-elongata_contig165357:1145..13011691679227.8167977-CDS-H-elongata_contig165357:1145..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165357 1146..1301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165357.4115.1prot_H-elongata_contig165357.4115.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165357 1146..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165357.4115.1

>prot_H-elongata_contig165357.4115.1 ID=prot_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MARVARVLLSVPASAAVLERDFSTAGRLITGSRSRLAGEYVEMTLFLNGN
KE
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mRNA from alignment at H-elongata_contig165357:1140..1301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165357.4115.1 ID=mRNA_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig165357:1140..1301+ (Himanthalia elongata Himel1 dioecious)
CCTAACATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGC TGCCGTCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGT CCCGTAGCCGGCTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAAC GGCAACAAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig165357:1140..1301+

>mRNA_H-elongata_contig165357.4115.1 ID=mRNA_H-elongata_contig165357.4115.1|Name=mRNA_H-elongata_contig165357.4115.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig165357:1140..1301+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGCTGCCGT
CCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGTA
GCCGGCTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAACGGCAAC
AAGGAGATGGCGCGCGTGGCTCGAGTTCTTCTGTCTGTGCCGGCATCTGC
TGCCGTCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGT
CCCGTAGCCGGCTGGCGGGCGAATACGTTGAGATGACGCTGTTTCTCAAC
GGCAACAAGGAG
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