mRNA_H-elongata_contig165225.4106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165225.4106.1
Unique NamemRNA_H-elongata_contig165225.4106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: D8LS59_ECTSI (Dynein intermediate chain family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS59_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.080e-44
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGE 264
            +TVTALCFH +NGD+LA GYGAFFFSPS  + GAVLFWSVRNP YPERTIHTHS VTSLDF+ERHP LLAVG+Y+GTIAIYDTAREGE
Sbjct:  628 RTVTALCFHHYNGDVLAVGYGAFFFSPSVHKGGAVLFWSVRNPEYPERTIHTHSSVTSLDFAERHPTLLAVGMYDGTIAIYDTAREGE 715
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A7S1TVL9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVL9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.210e-22
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGEV 267
            ++V+ + + + N D+LA GYG F+F    Q  GAVLFWS+RNP +PER I    GVT++DFS R+P+ +A+GLYNG I +YDT  + EV
Sbjct:  178 RSVSCMAYSKGNPDVLAVGYGEFYFDD--QNGGAVLFWSLRNPEFPERIIEVDVGVTAIDFSSRNPSYVAIGLYNGAIQVYDTRSKAEV 264
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A7S1XLS0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLS0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.270e-22
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGEV 267
            ++V+ + + + N D+LA GYG F+F    Q  GAVLFWS+RNP +PER I    GVT++DFS R+P+ +A+GLYNG I +YDT  + EV
Sbjct:  563 RSVSCMAYSKGNPDVLAVGYGEFYFDD--QNGGAVLFWSLRNPEFPERIIEVDVGVTAIDFSSRNPSYVAIGLYNGAIQVYDTRSKAEV 649
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A7S1GBN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBN6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.660e-22
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAR 255
            + V+ + +++ N D+LA  YG F F+   QR G +LFWS++NP YPE  + T +GVT+LDFSE HPNLLA GLYNG++AIYD  +
Sbjct:   44 RNVSCMVWNKVNQDLLAVSYGQFEFTD--QRDGLILFWSMKNPEYPECVLRTPAGVTTLDFSEAHPNLLAAGLYNGSVAIYDVRK 126
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A6P8IQF8_ACTTE (WD repeat-containing protein 78-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IQF8_ACTTE)

HSP 1 Score: 98.2 bits (243), Expect = 5.990e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    7 VTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYD 246
            V+ + +++ N DILA GYG F +S   Q+ G    WS++NP YPER  H +SGVT+LDFS  HPNLLAVGLY+GTIAIY+
Sbjct:  475 VSCMAWNKKNLDILAVGYGEFSYS--GQKGGLACCWSIKNPEYPERVFHVNSGVTALDFSAAHPNLLAVGLYDGTIAIYN 552
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A3M6TFN4_POCDA (Uncharacterized protein n=4 Tax=Scleractinia TaxID=6125 RepID=A0A3M6TFN4_POCDA)

HSP 1 Score: 97.1 bits (240), Expect = 1.520e-21
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYD 246
            + V+ L +++ N DILA GYG F FS   Q+ G    WS++NP YPER  H  SGVT++DFS  HPNLLAVG+Y+GTIAIY+
Sbjct:  459 RNVSCLAWNKLNPDILAVGYGEFVFSE--QKGGLACCWSIKNPEYPERIFHLDSGVTAVDFSAAHPNLLAVGMYDGTIAIYN 538
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: UPI00077AD9F3 (WD repeat-containing protein 78-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AD9F3)

HSP 1 Score: 96.3 bits (238), Expect = 2.750e-21
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGEV 267
            + V+ + +++ N DILA GYG F FS   Q+ G    WS++NP YPER  H  SGVT+LDFS  HPNLLAVG+Y+GTIAIY+     ++
Sbjct:  458 RNVSCMAWNKLNPDILAVGYGEFVFSE--QKGGLACCWSLKNPEYPERYFHLISGVTALDFSAAHPNLLAVGMYDGTIAIYNVRNRNDM 544
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BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: UPI001CF3BC3E (dynein axonemal intermediate chain 4-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3BC3E)

HSP 1 Score: 96.3 bits (238), Expect = 2.840e-21
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGEV 267
            + V+ + +++ N DILA GYG F FS   Q+ G    WS++NP YPER  H  SGVT+LDFS  HPNLLAVG+Y+GTIAIY+     ++
Sbjct:  458 RNVSCMAWNKLNPDILAVGYGEFVFSE--QKGGLACCWSLKNPEYPERYFHLISGVTALDFSAAHPNLLAVGMYDGTIAIYNVRNRNDM 544
[Close]
BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A7S2BXA5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXA5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.360e-21
Identity = 46/86 (53.49%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTARE 258
            +TVT++ +++ N DILA GYG F  S +A   G VLFWS+RNP +PER +   SGVT++DFS + PNLLAVG+Y+GT+AIY+  ++
Sbjct:  155 RTVTSMVWNRVNKDILAVGYGEFQSSENA--GGLVLFWSLRNPQFPERVLDIPSGVTAVDFSSKMPNLLAVGMYDGTVAIYNLRKD 238
[Close]
BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Match: A0A7S2RSJ4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RSJ4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.250e-21
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTIHTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGE 264
            +TV+ + +++ N D+LA  Y  F FS   QR G +LFW+++NP YPER I   SGV S+DFS  HP+LLA G+Y+GT+AIYD   EG+
Sbjct:  559 RTVSGMSWNKANQDLLAVSYCQFQFSD--QRDGLILFWTLKNPEYPERIIKCESGVCSVDFSTVHPSLLAAGMYDGTVAIYDVHHEGD 644
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165225.4106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS59_ECTSI6.080e-4482.95Dynein intermediate chain family n=1 Tax=Ectocarpu... [more]
A0A7S1TVL9_9STRA1.210e-2250.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XLS0_9STRA1.270e-2250.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1GBN6_9STRA4.660e-2252.94Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6P8IQF8_ACTTE5.990e-2257.50WD repeat-containing protein 78-like isoform X1 n=... [more]
A0A3M6TFN4_POCDA1.520e-2156.10Uncharacterized protein n=4 Tax=Scleractinia TaxID... [more]
UPI00077AD9F32.750e-2151.69WD repeat-containing protein 78-like n=1 Tax=Acrop... [more]
UPI001CF3BC3E2.840e-2151.69dynein axonemal intermediate chain 4-like n=1 Tax=... [more]
A0A7S2BXA5_9STRA3.360e-2153.49Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RSJ4_9STRA7.250e-2151.14Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165225contigH-elongata_contig165225:24..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.5e-37
Seed eggNOG ortholog2880.D8LS59
Preferred nameWDR78
KEGG koko:K22001
KEGG Pathwayko04926,map04926
GOsGO:0000003,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0007276,GO:0007283,GO:0008150,GO:0009987,GO:0015630,GO:0019953,GO:0022414,GO:0030286,GO:0032501,GO:0032504,GO:0032838,GO:0032991,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0045503,GO:0045504,GO:0048232,GO:0048609,GO:0051704,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.9889495-CDS-H-elongata_contig165225:23..1731622929966.9889495-CDS-H-elongata_contig165225:23..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165225 24..173 -
1691679227.5414305-CDS-H-elongata_contig165225:23..1731691679227.5414305-CDS-H-elongata_contig165225:23..173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165225 24..173 -
1622929967.0018866-CDS-H-elongata_contig165225:426..5431622929967.0018866-CDS-H-elongata_contig165225:426..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165225 427..543 -
1691679227.5563045-CDS-H-elongata_contig165225:426..5431691679227.5563045-CDS-H-elongata_contig165225:426..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165225 427..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165225.4106.1prot_H-elongata_contig165225.4106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165225 24..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165225.4106.1

>prot_H-elongata_contig165225.4106.1 ID=prot_H-elongata_contig165225.4106.1|Name=mRNA_H-elongata_contig165225.4106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
QTVTALCFHQHNGDILAAGYGAFFFSPSAQRSGAVLFWSVRNPAYPERTI
HTHSGVTSLDFSERHPNLLAVGLYNGTIAIYDTAREGEV
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mRNA from alignment at H-elongata_contig165225:24..543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165225.4106.1 ID=mRNA_H-elongata_contig165225.4106.1|Name=mRNA_H-elongata_contig165225.4106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=520bp|location=Sequence derived from alignment at H-elongata_contig165225:24..543- (Himanthalia elongata Himel1 dioecious)
CAGACTGTGACGGCCCTGTGCTTTCACCAGCACAACGGGGATATTTTGGC
GGCGGGATATGGCGCTTTTTTCTTTTCGCCAAGCGCACAGAGGAGCGGGG
CCGTCTTATTTTGGTCGGTGAGTTGCTGCAGTGCGTTTCCAAACGAGGGG
CGTACGTAAGAGCGCGTATTGGGCCGTTGTTCTGTACTGACACCCCGAAG
TTCAGTCTGCTGTGGGCGAACGTCATTTTGTCTCACGCTGTTGGTAGGCC
ACGTACCACGTATAGATTTTCTACACTTGCACCGCGACGAAATGGGGCAT
CGAACCCGCTCGTGCGTTTTGAAGCTGGCGCAACTTTTATTCGGCCGTGC
GATTGACATATTTTTCGCAGGTTCGTAACCCCGCGTACCCCGAGCGCACA
ATCCACACCCACAGCGGCGTCACCAGTCTCGATTTTTCCGAGCGACATCC
CAACCTGCTCGCCGTCGGATTGTACAACGGAACAATAGCGATCTACGACA
CGGCACGGGAGGGCGAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig165225:24..543-

>mRNA_H-elongata_contig165225.4106.1 ID=mRNA_H-elongata_contig165225.4106.1|Name=mRNA_H-elongata_contig165225.4106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig165225:24..543- (Himanthalia elongata Himel1 dioecious)
CAGACTGTGACGGCCCTGTGCTTTCACCAGCACAACGGGGATATTTTGGC
GGCGGGATATGGCGCTTTTTTCTTTTCGCCAAGCGCACAGAGGAGCGGGG
CCGTCTTATTTTGGTCGCAGACTGTGACGGCCCTGTGCTTTCACCAGCAC
AACGGGGATATTTTGGCGGCGGGATATGGCGCTTTTTTCTTTTCGCCAAG
CGCACAGAGGAGCGGGGCCGTCTTATTTTGGTCGGTTCGTAACCCCGCGT
ACCCCGAGCGCACAATCCACACCCACAGCGGCGTCACCAGTCTCGATTTT
TCCGAGCGACATCCCAACCTGCTCGCCGTCGGATTGTACAACGGAACAAT
AGCGATCTACGACACGGCACGGGAGGGCGAGGTTGTTCGTAACCCCGCGT
ACCCCGAGCGCACAATCCACACCCACAGCGGCGTCACCAGTCTCGATTTT
TCCGAGCGACATCCCAACCTGCTCGCCGTCGGATTGTACAACGGAACAAT
AGCGATCTACGACACGGCACGGGAGGGCGAGGTT
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