mRNA_H-elongata_contig1641.4050.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE) HSP 1 Score: 128 bits (322), Expect = 4.410e-33 Identity = 74/140 (52.86%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 22 RCEHNADPLTWSDTVAATQ-EYAQVLADACGS-LVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYC--GDRTY--LVCQYNPPGNYIGMYDENVEVA-AGNGC 381
RC HNADPLTWS TVA++ E+A+ L C S L HS YGENLYMC+GS SCYS E ++ S S+ YGGHATQILWKST ++GC +A C G Y LVCQY+PPGNY G Y+E V + +G C
Sbjct: 252 RCVHNADPLTWSSTVASSAAEHAERLTAQCSSNLFHSTQEQRYGYGENLYMCWGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 391
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 4.610e-32 Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 22 RCEHNADPLTWSDTVAATQ-EYAQVLADACGS-LVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEVA-AGNGC 381
RC HNADPLTWS TVA++ E+A+ L C S L HS YGENLYMC+GS SCYS E ++ S+ YGGHATQILWK+T ++GC +A C + T+LVCQY+PPGNY G Y+E V + +G C
Sbjct: 353 RCVHNADPLTWSSTVASSAAEHAERLTAQCSSSLFHSTQEQRYGYGENLYMCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 492
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A8E6Y896_MONPR (Pathogenesis-related protein 1 n=1 Tax=Moniliophthora perniciosa TaxID=153609 RepID=A0A8E6Y896_MONPR) HSP 1 Score: 108 bits (269), Expect = 1.890e-27 Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 19 LRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSCYSPEQINSSSIDGYG------GHATQILWKSTTELGCALAYCGDRTYLVCQYNPPGNYIGMYDENVEV 363
+R +HNA+PLTW++ VAAT AQ AD C ++ HS YGENL GS + ++ + + Y H TQ++WKSTTELGCA+A C TY VC YNPPGN IG + ENVEV
Sbjct: 39 VRAQHNAEPLTWNNQVAAT---AQSWADQC-TMEHSGGQYGENLAWGGGSFPIPAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCAVADCSGTTYHVCSYNPPGNVIGQFPENVEV 155
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.530e-26 Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 25 CEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSP---------EQINSSSIDGYGGHATQILWKSTTELGCALAYCGD----RTYLVCQYNPPGNYIGMYDENV 357
C HNADPLTWS TVA++ E+A+ L C SL HS YG NLY+ +GS SCYS +++ S S+ YGGHATQILWK+ ++GCA A C + +LVCQY+PPGN G Y+E V
Sbjct: 229 CVHNADPLTWSSTVASSAAEHAEGLTAQCFSSLFHSTQEQRYGYGANLYIRWGSDSCYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQYDPPGNSGGQYEEQV 358
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A0W0G968_9AGAR (Pathogenesis-related protein 1 n=10 Tax=Moniliophthora TaxID=221102 RepID=A0A0W0G968_9AGAR) HSP 1 Score: 103 bits (258), Expect = 8.650e-26 Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query: 19 LRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSCYSPEQINSSSIDGYG------GHATQILWKSTTELGCALAYCGDRTYLVCQYNPPGNYIGMYDENVEV 363
+R +HNA PLTW+D VAAT AQ A+ C ++ HS YGENL GS + ++ + + Y H TQ++WKSTTELGC +A C TY VC YNPPGN IG + NVEV
Sbjct: 39 VRVQHNAQPLTWNDQVAAT---AQNWANRC-TMQHSGGQYGENLAWGTGSFPISAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCGVADCSGTTYYVCNYNPPGNVIGQFPGNVEV 155
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE) HSP 1 Score: 103 bits (258), Expect = 5.830e-25 Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 22 RCEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEVAAGN 375
RC H ADPL WSD V ++ E+A L D C SL HS + YGENL+MC+G+ +CY+ E ++ ++ Y GHATQILWKST ++GC LA C + T+LVCQY+P GN G + EV N
Sbjct: 91 RCVHGADPLGWSDPVTSSAAEHAARLTDQCTSSLFHSTTDQRYGYGENLFMCWGTDTCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIEEVGLPN 227
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI) HSP 1 Score: 100 bits (250), Expect = 4.530e-23 Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 22 RCEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSP---------EQINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEV 363
RC H+ADPL WSD V ++ E+A L D C SL HS YGENL++C+G+ +CY+ E++ + Y GHATQILWKST +GC LA C + T+LVCQY+P GN G + EV
Sbjct: 178 RCVHSADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTREQRYGYGENLFVCWGTDTCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEV 310
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6C1EAG4_SACPS (SCP domain-containing protein n=2 Tax=Saccharomyces TaxID=4930 RepID=A0A6C1EAG4_SACPS) HSP 1 Score: 99.0 bits (245), Expect = 1.520e-21 Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 43 PLTWSDTVAATQEYAQVLAD---ACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
PLTWSDT+A YAQ AD G+L HSD YGENL + Y T Y + S G+ GH TQ++WKSTT++GC YCG Y++C YNPPGNY+G + E VE
Sbjct: 45 PLTWSDTLAT---YAQAYADEYDCSGTLTHSDGPYGENLALGYTDTGAVDAWYGEISKYNYSNPGFSESTGHFTQVVWKSTTQVGCGYKYCGTTWNNYVICSYNPPGNYLGEFAEEVE 159
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: J8Q0L8_SACAR (Pry3p n=1 Tax=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) TaxID=1160507 RepID=J8Q0L8_SACAR) HSP 1 Score: 99.0 bits (245), Expect = 1.560e-21 Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 43 PLTWSDTVAA-TQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
PLTWSDT+A Q+YA D G L HSD YGENL + Y T Y+ + + S G+ GH TQ++WKSTT++GC YCG Y++C YNPPGNY+G + E VE
Sbjct: 45 PLTWSDTLATYAQDYADQY-DCSGILTHSDGPYGENLALGYTDTGAVDAWYTEIKKYNYSDPGFSESTGHFTQVVWKSTTQIGCGYKYCGTTWNNYVICSYNPPGNYLGEFAEEVE 159
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A8B8UTX2_SACPA (uncharacterized protein n=1 Tax=Saccharomyces paradoxus TaxID=27291 RepID=A0A8B8UTX2_SACPA) HSP 1 Score: 98.2 bits (243), Expect = 2.900e-21 Identity = 55/116 (47.41%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 43 PLTWSDTVAA-TQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
PLTWSDT+A Q+YA D G L HSD YGENL + Y T Y + S G+ GH TQ++WKST E+GC YCG Y+VC YNPPGNY+G + E VE
Sbjct: 45 PLTWSDTLATYAQDYADQY-DCSGVLTHSDGPYGENLALGYTDTGAVDAWYGEISKYNYSNPGFSESTGHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEFAEEVE 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1641.4050.1 >prot_H-elongata_contig1641.4050.1 ID=prot_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp MTIICGLRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENLback to top mRNA from alignment at H-elongata_contig1641:4121..5196- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1641.4050.1 ID=mRNA_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-elongata_contig1641:4121..5196- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1641:4121..5196- >mRNA_H-elongata_contig1641.4050.1 ID=mRNA_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig1641:4121..5196- (Himanthalia elongata Himel1 dioecious)back to top |