mRNA_H-elongata_contig1641.4050.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1641.4050.1
Unique NamemRNA_H-elongata_contig1641.4050.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.410e-33
Identity = 74/140 (52.86%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   22 RCEHNADPLTWSDTVAATQ-EYAQVLADACGS-LVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYC--GDRTY--LVCQYNPPGNYIGMYDENVEVA-AGNGC 381
            RC HNADPLTWS TVA++  E+A+ L   C S L HS       YGENLYMC+GS SCYS E         ++ S S+  YGGHATQILWKST ++GC +A C  G   Y  LVCQY+PPGNY G Y+E V +  +G  C
Sbjct:  252 RCVHNADPLTWSSTVASSAAEHAERLTAQCSSNLFHSTQEQRYGYGENLYMCWGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 391          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.610e-32
Identity = 71/140 (50.71%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   22 RCEHNADPLTWSDTVAATQ-EYAQVLADACGS-LVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEVA-AGNGC 381
            RC HNADPLTWS TVA++  E+A+ L   C S L HS       YGENLYMC+GS SCYS E         ++   S+  YGGHATQILWK+T ++GC +A C +     T+LVCQY+PPGNY G Y+E V +  +G  C
Sbjct:  353 RCVHNADPLTWSSTVASSAAEHAERLTAQCSSSLFHSTQEQRYGYGENLYMCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYGGQYEEQVGLPDSGKSC 492          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A8E6Y896_MONPR (Pathogenesis-related protein 1 n=1 Tax=Moniliophthora perniciosa TaxID=153609 RepID=A0A8E6Y896_MONPR)

HSP 1 Score: 108 bits (269), Expect = 1.890e-27
Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   19 LRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSCYSPEQINSSSIDGYG------GHATQILWKSTTELGCALAYCGDRTYLVCQYNPPGNYIGMYDENVEV 363
            +R +HNA+PLTW++ VAAT   AQ  AD C ++ HS   YGENL    GS    +  ++ +  +  Y        H TQ++WKSTTELGCA+A C   TY VC YNPPGN IG + ENVEV
Sbjct:   39 VRAQHNAEPLTWNNQVAAT---AQSWADQC-TMEHSGGQYGENLAWGGGSFPIPAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCAVADCSGTTYHVCSYNPPGNVIGQFPENVEV 155          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.530e-26
Identity = 63/130 (48.46%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   25 CEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSP---------EQINSSSIDGYGGHATQILWKSTTELGCALAYCGD----RTYLVCQYNPPGNYIGMYDENV 357
            C HNADPLTWS TVA++  E+A+ L   C  SL HS       YG NLY+ +GS SCYS          +++ S S+  YGGHATQILWK+  ++GCA A C +      +LVCQY+PPGN  G Y+E V
Sbjct:  229 CVHNADPLTWSSTVASSAAEHAEGLTAQCFSSLFHSTQEQRYGYGANLYIRWGSDSCYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQYDPPGNSGGQYEEQV 358          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A0W0G968_9AGAR (Pathogenesis-related protein 1 n=10 Tax=Moniliophthora TaxID=221102 RepID=A0A0W0G968_9AGAR)

HSP 1 Score: 103 bits (258), Expect = 8.650e-26
Identity = 57/121 (47.11%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   19 LRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSCYSPEQINSSSIDGYG------GHATQILWKSTTELGCALAYCGDRTYLVCQYNPPGNYIGMYDENVEV 363
            +R +HNA PLTW+D VAAT   AQ  A+ C ++ HS   YGENL    GS    +  ++ +  +  Y        H TQ++WKSTTELGC +A C   TY VC YNPPGN IG +  NVEV
Sbjct:   39 VRVQHNAQPLTWNDQVAAT---AQNWANRC-TMQHSGGQYGENLAWGTGSFPISAAVKLWADEVSEYDPNNPQYSHFTQVVWKSTTELGCGVADCSGTTYYVCNYNPPGNVIGQFPGNVEV 155          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.830e-25
Identity = 61/137 (44.53%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   22 RCEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSPE---------QINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEVAAGN 375
            RC H ADPL WSD V ++  E+A  L D C  SL HS +     YGENL+MC+G+ +CY+ E         ++   ++  Y GHATQILWKST ++GC LA C +     T+LVCQY+P GN  G  +   EV   N
Sbjct:   91 RCVHGADPLGWSDPVTSSAAEHAARLTDQCTSSLFHSTTDQRYGYGENLFMCWGTDTCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIEEVGLPN 227          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.530e-23
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   22 RCEHNADPLTWSDTVAATQ-EYAQVLADAC-GSLVHSDSI----YGENLYMCYGSTSCYSP---------EQINSSSIDGYGGHATQILWKSTTELGCALAYCGDR----TYLVCQYNPPGNYIGMYDENVEV 363
            RC H+ADPL WSD V ++  E+A  L D C  SL HS       YGENL++C+G+ +CY+          E++    +  Y GHATQILWKST  +GC LA C +     T+LVCQY+P GN  G  +   EV
Sbjct:  178 RCVHSADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTREQRYGYGENLFVCWGTDTCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEV 310          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A6C1EAG4_SACPS (SCP domain-containing protein n=2 Tax=Saccharomyces TaxID=4930 RepID=A0A6C1EAG4_SACPS)

HSP 1 Score: 99.0 bits (245), Expect = 1.520e-21
Identity = 55/118 (46.61%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   43 PLTWSDTVAATQEYAQVLAD---ACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
            PLTWSDT+A    YAQ  AD     G+L HSD  YGENL + Y  T      Y      + S  G+    GH TQ++WKSTT++GC   YCG     Y++C YNPPGNY+G + E VE
Sbjct:   45 PLTWSDTLAT---YAQAYADEYDCSGTLTHSDGPYGENLALGYTDTGAVDAWYGEISKYNYSNPGFSESTGHFTQVVWKSTTQVGCGYKYCGTTWNNYVICSYNPPGNYLGEFAEEVE 159          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: J8Q0L8_SACAR (Pry3p n=1 Tax=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) TaxID=1160507 RepID=J8Q0L8_SACAR)

HSP 1 Score: 99.0 bits (245), Expect = 1.560e-21
Identity = 54/116 (46.55%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   43 PLTWSDTVAA-TQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
            PLTWSDT+A   Q+YA    D  G L HSD  YGENL + Y  T      Y+  +  + S  G+    GH TQ++WKSTT++GC   YCG     Y++C YNPPGNY+G + E VE
Sbjct:   45 PLTWSDTLATYAQDYADQY-DCSGILTHSDGPYGENLALGYTDTGAVDAWYTEIKKYNYSDPGFSESTGHFTQVVWKSTTQIGCGYKYCGTTWNNYVICSYNPPGNYLGEFAEEVE 159          
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Match: A0A8B8UTX2_SACPA (uncharacterized protein n=1 Tax=Saccharomyces paradoxus TaxID=27291 RepID=A0A8B8UTX2_SACPA)

HSP 1 Score: 98.2 bits (243), Expect = 2.900e-21
Identity = 55/116 (47.41%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   43 PLTWSDTVAA-TQEYAQVLADACGSLVHSDSIYGENLYMCYGSTSC----YSPEQINSSSIDGYG---GHATQILWKSTTELGCALAYCGD--RTYLVCQYNPPGNYIGMYDENVE 360
            PLTWSDT+A   Q+YA    D  G L HSD  YGENL + Y  T      Y      + S  G+    GH TQ++WKST E+GC   YCG     Y+VC YNPPGNY+G + E VE
Sbjct:   45 PLTWSDTLATYAQDYADQY-DCSGVLTHSDGPYGENLALGYTDTGAVDAWYGEISKYNYSNPGFSESTGHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEFAEEVE 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1641.4050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI7_9PHAE4.410e-3352.86SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX3_ECTSI4.610e-3250.71Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A8E6Y896_MONPR1.890e-2748.76Pathogenesis-related protein 1 n=1 Tax=Moniliophth... [more]
A0A6H5JCL1_9PHAE1.530e-2648.46SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0W0G968_9AGAR8.650e-2647.11Pathogenesis-related protein 1 n=10 Tax=Moniliopht... [more]
A0A6H5KK50_9PHAE5.830e-2544.53SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJW7_ECTSI4.530e-2344.36Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
A0A6C1EAG4_SACPS1.520e-2146.61SCP domain-containing protein n=2 Tax=Saccharomyce... [more]
J8Q0L8_SACAR1.560e-2146.55Pry3p n=1 Tax=Saccharomyces arboricola (strain H-6... [more]
A0A8B8UTX2_SACPA2.900e-2147.41uncharacterized protein n=1 Tax=Saccharomyces para... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1641contigH-elongata_contig1641:4121..5196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue9.2e-28
Seed eggNOG ortholog2880.D8LJW8
KEGG koko:K19919,ko:K20412
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size390
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1641.4050.1prot_H-elongata_contig1641.4050.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1641 4121..5196 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.8095913-CDS-H-elongata_contig1641:4120..41871622929959.8095913-CDS-H-elongata_contig1641:4120..4187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4121..4187 -
1691679224.310866-CDS-H-elongata_contig1641:4120..41871691679224.310866-CDS-H-elongata_contig1641:4120..4187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4121..4187 -
1622929959.8201447-CDS-H-elongata_contig1641:4451..45841622929959.8201447-CDS-H-elongata_contig1641:4451..4584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4452..4584 -
1691679224.3200572-CDS-H-elongata_contig1641:4451..45841691679224.3200572-CDS-H-elongata_contig1641:4451..4584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4452..4584 -
1622929959.832279-CDS-H-elongata_contig1641:4809..49261622929959.832279-CDS-H-elongata_contig1641:4809..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4810..4926 -
1691679224.3274505-CDS-H-elongata_contig1641:4809..49261691679224.3274505-CDS-H-elongata_contig1641:4809..4926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 4810..4926 -
1622929959.843503-CDS-H-elongata_contig1641:5123..51961622929959.843503-CDS-H-elongata_contig1641:5123..5196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 5124..5196 -
1691679224.335844-CDS-H-elongata_contig1641:5123..51961691679224.335844-CDS-H-elongata_contig1641:5123..5196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1641 5124..5196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1641.4050.1

>prot_H-elongata_contig1641.4050.1 ID=prot_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MTIICGLRCEHNADPLTWSDTVAATQEYAQVLADACGSLVHSDSIYGENL
YMCYGSTSCYSPEQINSSSIDGYGGHATQILWKSTTELGCALAYCGDRTY
LVCQYNPPGNYIGMYDENVEVAAGNGCYS*
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mRNA from alignment at H-elongata_contig1641:4121..5196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1641.4050.1 ID=mRNA_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-elongata_contig1641:4121..5196- (Himanthalia elongata Himel1 dioecious)
ATGACTATTATCTGCGGGCTCAGGTGTGAACACAACGCGGATCCTCTAAC GTGGAGCGACACGGTGGCGGCCAGTGCAGCGGTAAGCCGTTTATGCCTTG TCTCGTGTGGATGCCTCTCTACTTCGTTAAGATCGAAAGCATCGCAACGT TGTCGTTGGTCGAGGGGTTGGAACTCTATCAAACATATCGCTGGGACGAA CATCATTATACTAATATAACTCGAGTCTTGCAACTTTCATTATCACTCCC TGTGAAACCATGCTTCGGAGCGCAGGAATACGCCCAAGTTCTTGCCGACG CTTGTGGAAGTTTGGTTCACAGCGATAGCATCTACGGCGAGAATCTGTAC ATGTGCTATGGTAGCACGTCGTGCTACTCACCCGAGCGTGCAATGGAGGG GCTATGTAAGTTTGTCATACGCGGACCTCGCCTAACCACCATTTTCCCTC TTGAGTTATCGAAAACTCGTCTTCGCCGTGGCCAAATATTCGATGATTAA TTACTAATGTCATTGTATTACATCTATTAATACTTTTATTTCATGAGCAA CTAACTGTCATATCTGCCTGCTGGTGTAAATGGTGCTGTCAACTTCACCG CAGATGAGGAAGAGATAAATTCGAGCAGCATTGACGGATACGGTGGTCAC GCGACCCAAATCCTATGGAAGTCGACCACGGAGCTCGGCTGCGCATTGGC ATACTGTGGGGACAGGACGTACCTCGTGTGCCAGTACAACCCTCCGTGAG TGTAGCCTTTACTAAGATATTTGTTTCCTCCTTTTCACGAAAGACCGTGG ACGGCACCCTAAACTACCTCCCATTCTCAGCAAGGGCACCACACAGAGCT TATTTACCATGATCAGTGAAGGCAAAGCAGTCATTTGTTTCAGATAAGCC TGTCGTTGCGCTTGCTCTTGAGTGTCAAGATAGGGGACCCTGTAAGGGAT CGCAATGGACGTGACCGACCTGGCGTCTTTATCCGTTTGTCCTCCCTGCT TTTTTCCAGTGGTAATTACATCGGAATGTACGACGAGAATGTGGAGGTCG CCGCCGGAAATGGATGCTACTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1641:4121..5196-

>mRNA_H-elongata_contig1641.4050.1 ID=mRNA_H-elongata_contig1641.4050.1|Name=mRNA_H-elongata_contig1641.4050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig1641:4121..5196- (Himanthalia elongata Himel1 dioecious)
ATGACTATTATCTGCGGGCTCAGGTGTGAACACAACGCGGATCCTCTAAC
GTGGAGCGACACGGTGGCGGCCAATGACTATTATCTGCGGGCTCAGGTGT
GAACACAACGCGGATCCTCTAACGTGGAGCGACACGGTGGCGGCCACGCA
GGAATACGCCCAAGTTCTTGCCGACGCTTGTGGAAGTTTGGTTCACAGCG
ATAGCATCTACGGCGAGAATCTGTACATGTGCTATGGTAGCACGTCGTGC
TACTCACCCGAGCCGCAGGAATACGCCCAAGTTCTTGCCGACGCTTGTGG
AAGTTTGGTTCACAGCGATAGCATCTACGGCGAGAATCTGTACATGTGCT
ATGGTAGCACGTCGTGCTACTCACCCGAGCAGATAAATTCGAGCAGCATT
GACGGATACGGTGGTCACGCGACCCAAATCCTATGGAAGTCGACCACGGA
GCTCGGCTGCGCATTGGCATACTGTGGGGACAGGACGTACCTCGTGTGCC
AGTACAACCCTCCAGATAAATTCGAGCAGCATTGACGGATACGGTGGTCA
CGCGACCCAAATCCTATGGAAGTCGACCACGGAGCTCGGCTGCGCATTGG
CATACTGTGGGGACAGGACGTACCTCGTGTGCCAGTACAACCCTCCTGGT
AATTACATCGGAATGTACGACGAGAATGTGGAGGTCGCCGCCGGAAATGG
ATGCTACTCGTGATGGTAATTACATCGGAATGTACGACGAGAATGTGGAG
GTCGCCGCCGGAAATGGATGCTACTCGTGA
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