mRNA_H-elongata_contig163811.4035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163811.4035.1
Unique NamemRNA_H-elongata_contig163811.4035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: D7FM44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM44_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.600e-73
Identity = 121/137 (88.32%), Postives = 132/137 (96.35%), Query Frame = 1
Query:   22 QADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPKPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            QADPGRSIP GTL+AIATVT TY+VFV +FGTI+SNE+LI +KLVA+RVAWPTHYLVSVGIVFSSLGAAMQCLVG+SRLVAAIANDHTIPLL PF+PKPDEEP+KAVYLVW+LASLPCLAGNLDYITPVMTMFFLLM
Sbjct:   98 QADPGRSIPKGTLAAIATVTATYVVFVLMFGTILSNEVLIAEKLVASRVAWPTHYLVSVGIVFSSLGAAMQCLVGSSRLVAAIANDHTIPLLRPFAPKPDEEPNKAVYLVWVLASLPCLAGNLDYITPVMTMFFLLM 234          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 4.010e-71
Identity = 120/144 (83.33%), Postives = 133/144 (92.36%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPKPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R    ADPGRSIP GTL+AIATVT TY+VFV +FGTI+SN++L+ +KLVA+RVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLL PF+PKPDEEP+KAV+LVW+LASLPCLAGNLDYITPVMTMFFLLM
Sbjct:  330 GCNRSAVLADPGRSIPKGTLAAIATVTATYVVFVLMFGTILSNQVLVAEKLVASRVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLRPFAPKPDEEPNKAVFLVWVLASLPCLAGNLDYITPVMTMFFLLM 473          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A7S2K263_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K263_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.210e-43
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSP-KPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R    ++PG+SIPTGT+ AI T T  Y+  VWLFG+ +SNE L  DKL+   V +P   +V +GI+ SS+GAA+QC+ GA RL+AAIA D TIP L PF P  P  EP +AV+L W +ASLP LAGNLD+ITP++TMFFLLM
Sbjct:  365 GSNRSSVLSNPGKSIPTGTIGAIMTTTLIYISVVWLFGSFVSNEALKADKLIVTAVTFPHELIVKIGIIMSSIGAALQCVAGAPRLLAAIAMDETIPFLRPFMPASPTAEPKRAVWLTWFIASLPTLAGNLDFITPIITMFFLLM 509          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A7S4MWD7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWD7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 8.570e-39
Identity = 79/148 (53.38%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPKPDEE----PSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R    ADPGRSIP GT+SAI   T  Y+  VWLFG  +SN  L  DK V + VA+P   +V VG+V S +GAA+QCL GA RL+ AIA D T+P+L    PK  E+    P KAV++ W +AS+P LAGNLD+ITP++TMF+LLM
Sbjct:  303 GSNRSAVLADPGRSIPRGTISAIGATTAVYVCVVWLFGLTVSNRTLKTDKFVVSSVAFPNDSVVKVGVVLSCVGAALQCLAGAPRLLQAIAMDGTMPMLKSLQPKHGEDITSTPKKAVWITWFIASVPTLAGNLDHITPIVTMFYLLM 450          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A2R5GRV7_9STRA (Solute carrier family 12 member 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRV7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.940e-37
Identity = 75/145 (51.72%), Postives = 101/145 (69.66%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPF-SPKPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R     +PGR+IP GTL AIAT T  Y++  WLFG +++NE L+ +KLVA+ +AWP  Y+V+VGI+ S +GA +Q L GA +L+ +IAND  IP L  F +  PD+EP +AV     +A+  CLAGNLDYITP++TMFFL M
Sbjct:  368 GSNRSGVLENPGRAIPKGTLGAIATTTSLYIMTTWLFGLVVANETLLSNKLVASTIAWPHQYVVAVGIIMSCVGAGLQSLAGAPQLLKSIANDGHIPFLRVFGTANPDDEPRRAVAFTTAIAAATCLAGNLDYITPIITMFFLSM 512          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A7R9YE43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE43_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.560e-37
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPKPDEE----PSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R     +PG SIP GTL+AI T    Y++ VW+FG  +SN+ L +DKL+ A VAWP  Y V VGIV S++GA +Q L GA RL+ AIAND  +P L  F+ +PDE       +AV L +++ASLPCLAGNLD+ITP +TM FL+M
Sbjct:  307 GSNRSGVLRNPGVSIPKGTLAAIVTTYVVYILTVWMFGLSISNDALKDDKLIVAAVAWPAKYAVQVGIVLSTVGAGLQSLTGAPRLLVAIANDGFVPFLQYFAQRPDEPLETTVKRAVILTYVIASLPCLAGNLDFITPFITMLFLIM 454          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: F0YC09_AURAN (AA_permease domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC09_AURAN)

HSP 1 Score: 142 bits (359), Expect = 5.240e-37
Identity = 75/144 (52.08%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPKPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R    A P +SIP GTL+AIA  T  Y+V VWL+G ++++++LIE+KLV A VAWP+  +V +GI+ S +GAA+Q L GA RL+AAIA+D  +P+L  F+P P +    A+ L W +AS+PCLAG L+ ITP++TMFFLLM
Sbjct:  378 GSNRSGVLATPSKSIPLGTLAAIALTTFLYVVVVWLYGLVVAHDVLIEEKLVVALVAWPSPIIVKLGIIMSCVGAALQSLTGAPRLLAAIASDGALPVLAAFAP-PVDAGWPALALTWFVASIPCLAGELNAITPIVTMFFLLM 520          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.810e-36
Identity = 83/155 (53.55%), Postives = 101/155 (65.16%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPF-SPKPD----------EEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R     +PGRSIP GTL AIA     YL F+W FG  ++   LI+DKLVA  VAWPT YLV+VGIV +SLGAAMQC+ GAS L+AAIA+D  +P+L  F SP               P++AV    ++A+LPCLAGNLDYIT  +TM FLLM
Sbjct:  295 GCNRSAVLHNPGRSIPKGTLWAIAATALLYLFFMWFFGCSVAYGTLIDDKLVAMHVAWPTPYLVAVGIVAASLGAAMQCVTGASSLLAAIADDGALPVLSAFASPAAXXXXXXXXXXARAPARAVVATGLIAALPCLAGNLDYITAPITMAFLLM 449          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A7S1BPY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPY8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.370e-35
Identity = 74/145 (51.03%), Postives = 101/145 (69.66%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPK-PDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R     +   SIPTGT+SAI   T  Y +FV L  + +SN+IL+E+KLV A +A+P   +V  GI+ SSLGAA+QCL GASRL+AAIA D  +P L  F+P+ P   P KA+ + W++ASL  +AGN+D+ITP++TMFFL+M
Sbjct:  320 GSNRSAVLKNSSESIPTGTISAIFATTGLYFLFVSLLSSTLSNDILLENKLVVADIAFPHPIIVKAGIIMSSLGAALQCLTGASRLLAAIAEDGCLPFLRAFTPETPSANPVKAIIVTWLIASLFTIAGNIDFITPIITMFFLMM 464          
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Match: A0A7S2R6E1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R6E1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.710e-35
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = 1
Query:    1 GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDKLVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLWPFSPK-PDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM 432
            G  R      PG+SIP GTL AI T T  Y++ VWLFG  ++N  L+E+KLVA+ +AWP  Y+V VGI+ S +GA +Q L GA +L+ +IAND  IP L  F  + P++EP +AV     +A++ C AGNLDYITP++TMFFL M
Sbjct:  317 GSNRSGVLRSPGQSIPRGTLGAITTTTSLYIITVWLFGLSVANSTLMENKLVASYIAWPHQYVVGVGIIMSCVGAGLQSLAGAPQLLKSIANDGHIPFLKIFGTEHPEDEPRRAVVFTTSIAAVCCFAGNLDYITPIITMFFLSM 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163811.4035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM44_ECTSI5.600e-7388.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z6_9PHAE4.010e-7183.33Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2K263_9STRA2.210e-4356.55Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4MWD7_9STRA8.570e-3953.38Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2R5GRV7_9STRA1.940e-3751.72Solute carrier family 12 member 2 n=1 Tax=Hondaea ... [more]
A0A7R9YE43_9STRA2.560e-3752.03Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YC09_AURAN5.240e-3752.08AA_permease domain-containing protein (Fragment) n... [more]
A0A835Z2U9_9STRA7.810e-3653.55Amino acid permease-domain-containing protein n=1 ... [more]
A0A7S1BPY8_9STRA1.370e-3551.03Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2R6E1_9STRA3.710e-3550.34Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163811contigH-elongata_contig163811:172..1045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.7e-62
Seed eggNOG ortholog2880.D7FM44
KEGG koko:K14427
KEGG TC2.A.30.5
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.2150111-CDS-H-elongata_contig163811:171..3701622929958.2150111-CDS-H-elongata_contig163811:171..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163811 172..370 +
1691679223.4903593-CDS-H-elongata_contig163811:171..3701691679223.4903593-CDS-H-elongata_contig163811:171..370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163811 172..370 +
1622929958.225709-CDS-H-elongata_contig163811:809..10451622929958.225709-CDS-H-elongata_contig163811:809..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163811 810..1045 +
1691679223.5046532-CDS-H-elongata_contig163811:809..10451691679223.5046532-CDS-H-elongata_contig163811:809..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163811 810..1045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163811.4035.1prot_H-elongata_contig163811.4035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163811 172..1045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163811.4035.1

>prot_H-elongata_contig163811.4035.1 ID=prot_H-elongata_contig163811.4035.1|Name=mRNA_H-elongata_contig163811.4035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
GLGRCQTQADPGRSIPTGTLSAIATVTCTYLVFVWLFGTIMSNEILIEDK
LVAARVAWPTHYLVSVGIVFSSLGAAMQCLVGASRLVAAIANDHTIPLLW
PFSPKPDEEPSKAVYLVWILASLPCLAGNLDYITPVMTMFFLLM*
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mRNA from alignment at H-elongata_contig163811:172..1045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163811.4035.1 ID=mRNA_H-elongata_contig163811.4035.1|Name=mRNA_H-elongata_contig163811.4035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=874bp|location=Sequence derived from alignment at H-elongata_contig163811:172..1045+ (Himanthalia elongata Himel1 dioecious)
GGGCTTGGGCGATGTCAAACGCAGGCTGATCCGGGACGGTCGATCCCGAC GGGGACGCTGTCGGCCATCGCAACGGTGACTTGCACGTATCTGGTGTTCG TCTGGCTATTCGGGACGATTATGTCGAATGAAATTCTCATCGAAGATAAG CTCGTCGCGGCCAGGGTCGCGTGGCCAACGCATTACCTCGTTTCCGTTGG TGAGAGAAGATCAAGGGCAGAGTAGAGGAGAGGAGAAAAAAGGAGGGCAG CAAAGTAGTGCCGCGCAGGGATACCCTGAATTTCTCGCATGTTGCAGAAA CAGGGGAAAGGGAAAGGGCAGCGGTTGGGAATCTGATATTTTACGTCAAA TTGTGTGGATTTTTCTTCTTCTTTACGACGCGGCATTTCGAGGTGTGTCG TGTCCTGCATTCCGACACCTTATATCCCCTCTATATCTCGAGCTCGTTCT CGCTTTTAATATTTTAATAATAATAGTTGTTTCCTCTTTGTCGCTTCCTC TCTGTTTTTTGTTCCGATCCCATTAGATCTCTCCTCCCTTCGAGGTCACT CATATGTTTTGTATGTGAAAATGTGTGTTTATGTCTCCGTCTCTGTCTGC CTGGCTGTCTGGCTGTATCTCCTTCTCATTTCTCCAAGGAATCGTTTTCT CCTCTCTGGGGGCAGCGATGCAATGCCTTGTCGGCGCCTCCCGGCTGGTT GCCGCTATCGCCAACGACCACACGATCCCCCTGCTGTGGCCTTTCTCCCC CAAGCCAGACGAGGAGCCGTCAAAGGCGGTATACCTCGTGTGGATCCTAG CGTCCTTGCCCTGTCTCGCCGGAAACCTGGACTACATTACCCCCGTCATG ACCATGTTTTTCTTGTTAATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig163811:172..1045+

>mRNA_H-elongata_contig163811.4035.1 ID=mRNA_H-elongata_contig163811.4035.1|Name=mRNA_H-elongata_contig163811.4035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig163811:172..1045+ (Himanthalia elongata Himel1 dioecious)
GGGCTTGGGCGATGTCAAACGCAGGCTGATCCGGGACGGTCGATCCCGAC
GGGGACGCTGTCGGCCATCGCAACGGTGACTTGCACGTATCTGGTGTTCG
TCTGGCTATTCGGGACGATTATGTCGAATGAAATTCTCATCGAAGATAAG
CTCGTCGCGGCCAGGGTCGCGTGGCCAACGCATTACCTCGTTTCCGTTGG
GGCTTGGGCGATGTCAAACGCAGGCTGATCCGGGACGGTCGATCCCGACG
GGGACGCTGTCGGCCATCGCAACGGTGACTTGCACGTATCTGGTGTTCGT
CTGGCTATTCGGGACGATTATGTCGAATGAAATTCTCATCGAAGATAAGC
TCGTCGCGGCCAGGGTCGCGTGGCCAACGCATTACCTCGTTTCCGTTGGA
ATCGTTTTCTCCTCTCTGGGGGCAGCGATGCAATGCCTTGTCGGCGCCTC
CCGGCTGGTTGCCGCTATCGCCAACGACCACACGATCCCCCTGCTGTGGC
CTTTCTCCCCCAAGCCAGACGAGGAGCCGTCAAAGGCGGTATACCTCGTG
TGGATCCTAGCGTCCTTGCCCTGTCTCGCCGGAAACCTGGACTACATTAC
CCCCGTCATGACCATGTTTTTCTTGTTAATGTGAGAATCGTTTTCTCCTC
TCTGGGGGCAGCGATGCAATGCCTTGTCGGCGCCTCCCGGCTGGTTGCCG
CTATCGCCAACGACCACACGATCCCCCTGCTGTGGCCTTTCTCCCCCAAG
CCAGACGAGGAGCCGTCAAAGGCGGTATACCTCGTGTGGATCCTAGCGTC
CTTGCCCTGTCTCGCCGGAAACCTGGACTACATTACCCCCGTCATGACCA
TGTTTTTCTTGTTAATGTGA
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