mRNA_H-elongata_contig163793.4034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163793.4034.1
Unique NamemRNA_H-elongata_contig163793.4034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A6H5JR37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR37_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 8.430e-74
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGSTHMARIVGQKKAREIWFLC +YSAKEAL MGLVNTVVPL ELE ET+KWCRRIV NSPTA+SCLKAALNADEDGQAG+MQLAGNATRLFYLSEEGKEGKNAFLEKRKP+FRK+L+S+
Sbjct:  180 FDAGYGSTHMARIVGQKKAREIWFLCRYYSAKEALDMGLVNTVVPLDELELETMKWCRRIVQNSPTAISCLKAALNADEDGQAGVMQLAGNATRLFYLSEEGKEGKNAFLEKRKPEFRKLLTSK 303          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: D7FHN2_ECTSI (Naphthoate synthase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.330e-67
Identity = 101/115 (87.83%), Postives = 109/115 (94.78%), Query Frame = 3
Query:   30 MARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            MARIVGQKKAREIWFLC +YSAKEAL MGLVNTVVPL  LE ET+KWCRRIV NSPTA+SCLKAALNADEDGQAG+MQLAGNATRLFYLSEEGKEGKNAFLEKRKP+FRK+L+S+
Sbjct:    1 MARIVGQKKAREIWFLCRYYSAKEALDMGLVNTVVPLDALELETLKWCRRIVQNSPTAISCLKAALNADEDGQAGVMQLAGNATRLFYLSEEGKEGKNAFLEKRKPEFRKLLTSK 115          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A7S4DGT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGT8_HETAK)

HSP 1 Score: 209 bits (533), Expect = 1.270e-65
Identity = 99/124 (79.84%), Postives = 115/124 (92.74%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGS+HMARIVGQKKAREIWFLC +Y+A+EAL MGLVNTVVPL ELE E+++WCRRI+ NSPTA++CLKAALNADEDGQAG MQLAGNATRLFYLSEEGKEG++AF++KR P FRK+ SS+
Sbjct:  180 FDAGYGSSHMARIVGQKKAREIWFLCRYYTAQEALDMGLVNTVVPLHELEGESLRWCRRIMQNSPTAIACLKAALNADEDGQAGSMQLAGNATRLFYLSEEGKEGRDAFMQKRPPAFRKLPSSK 303          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: W7TL55_9STRA (Naphthoate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL55_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.650e-65
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFR 356
            FDAGYGS+HMAR+VGQKKAREIWFLC FYSA EA  MGLVNTVVPLA LE ET+KWCRRI+ NSPTA++C KAALNADEDG AGIM+LAGNATRLFYLSEEGKEG+NAFL+KRKP FR
Sbjct:  179 FDAGYGSSHMARLVGQKKAREIWFLCRFYSAHEAQDMGLVNTVVPLASLEGETLKWCRRIMENSPTAIACCKAALNADEDGAAGIMELAGNATRLFYLSEEGKEGRNAFLQKRKPAFR 296          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: L1JM70_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JM70_GUITC)

HSP 1 Score: 204 bits (520), Expect = 1.110e-63
Identity = 97/124 (78.23%), Postives = 114/124 (91.94%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGS+HMARIVGQKKAREIWFLC  Y+AKEAL M LVN+VVPLAELE+ET++WCRRI++ SPTAL+CLKAA+NADEDGQAGIM+LAG ATRL+YLSEEGKEG+NAF+++R P FR + SSR
Sbjct:  178 FDAGYGSSHMARIVGQKKAREIWFLCRLYNAKEALEMKLVNSVVPLAELERETLRWCRRILALSPTALACLKAAINADEDGQAGIMELAGQATRLYYLSEEGKEGRNAFVQRRPPAFRSIPSSR 301          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A835ZE17_9STRA (Putative naphthoate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE17_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.810e-63
Identity = 100/124 (80.65%), Postives = 112/124 (90.32%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGS+HMARIVGQKKAREIWFL  FYSA+EAL MGLVN VVPLA+LE ET+KWCRRI+ NSPTA+SCLKAALNADEDGQAG MQLAGNATRLFYLSEEGKEG++AFL KR  +FR + +S+
Sbjct:  171 FDAGYGSSHMARIVGQKKAREIWFLSRFYSAQEALDMGLVNKVVPLAQLEGETMKWCRRIMENSPTAISCLKAALNADEDGQAGSMQLAGNATRLFYLSEEGKEGRDAFLAKRPARFRAVPTSK 294          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A7S1UL01_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL01_9STRA)

HSP 1 Score: 200 bits (509), Expect = 4.540e-62
Identity = 95/124 (76.61%), Postives = 111/124 (89.52%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGS+HMARIVGQKKAREIWFLC+FY A+EAL MGLVNTVVP+  LE+ T+KW RRI+ NSPTAL+CLKAALNADEDG AG+M+LAGNATRL+Y+SEE KEGK AFL K+ PQFRK+ +S+
Sbjct:  174 FDAGYGSSHMARIVGQKKAREIWFLCNFYGAQEALDMGLVNTVVPVDMLERTTLKWARRIMQNSPTALACLKAALNADEDGAAGVMELAGNATRLYYMSEEAKEGKRAFLRKQAPQFRKIPTSK 297          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A7S0YTF3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YTF3_9CRYP)

HSP 1 Score: 199 bits (507), Expect = 1.050e-61
Identity = 97/124 (78.23%), Postives = 111/124 (89.52%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQFRKMLSSR 374
            FDAGYGS HMARIVGQKKAREIWFLC  Y+AKEAL M LVNTVVPLA+LE ET++WCRRI+  SPTA++CLKAA+NADEDGQAGIM+LAG ATRLFYLSEEGKEG++A+ +KRK  FR +LSSR
Sbjct:  179 FDAGYGSGHMARIVGQKKAREIWFLCRLYTAKEALDMKLVNTVVPLAQLEGETLRWCRRIMQLSPTAIACLKAAMNADEDGQAGIMELAGLATRLFYLSEEGKEGRDAYNQKRKVDFRSVLSSR 302          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A1V5YYW7_9BACT (1,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YYW7_9BACT)

HSP 1 Score: 192 bits (489), Expect = 2.460e-59
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQF 353
            FDAGYGS H+AR+VGQKKAREIWFLC  Y+A++AL MGLVNTVVPLAELE+ET++WCR I+ NSPTAL  +KAA+NADEDGQAG+M+LAGNAT LFY SEEG+EG+NAFLEKR P F
Sbjct:  152 FDAGYGSAHLARMVGQKKAREIWFLCRQYNAQQALEMGLVNTVVPLAELEKETVQWCREIMRNSPTALRFIKAAMNADEDGQAGLMELAGNATSLFYRSEEGQEGRNAFLEKRDPDF 268          
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Match: A0A1V6F4J9_9BACT (1,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6F4J9_9BACT)

HSP 1 Score: 191 bits (486), Expect = 6.800e-59
Identity = 87/117 (74.36%), Postives = 104/117 (88.89%), Query Frame = 3
Query:    3 FDAGYGSTHMARIVGQKKAREIWFLCSFYSAKEALHMGLVNTVVPLAELEQETIKWCRRIVSNSPTALSCLKAALNADEDGQAGIMQLAGNATRLFYLSEEGKEGKNAFLEKRKPQF 353
            FDAGYGS H+AR+VGQKKAREIWFLC  Y+A++AL MG+VNTVVPL  LE ET+ WCR I++NSPTAL C+KAA+NADEDGQAG+M+LAGNAT LFY++EEG+EG+NAFLEKR P F
Sbjct:  151 FDAGYGSAHLARMVGQKKAREIWFLCRQYTAQQALEMGMVNTVVPLERLEAETVAWCREILANSPTALRCIKAAMNADEDGQAGLMELAGNATGLFYMTEEGQEGRNAFLEKRPPDF 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163793.4034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR37_9PHAE8.430e-7489.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHN2_ECTSI1.330e-6787.83Naphthoate synthase, partial n=1 Tax=Ectocarpus si... [more]
A0A7S4DGT8_HETAK1.270e-6579.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TL55_9STRA9.650e-6583.90Naphthoate synthase n=2 Tax=Monodopsidaceae TaxID=... [more]
L1JM70_GUITC1.110e-6378.23Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A835ZE17_9STRA1.810e-6380.65Putative naphthoate synthase n=1 Tax=Tribonema min... [more]
A0A7S1UL01_9STRA4.540e-6276.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0YTF3_9CRYP1.050e-6178.23Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A1V5YYW7_9BACT2.460e-5976.921,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=Can... [more]
A0A1V6F4J9_9BACT6.800e-5974.361,4-dihydroxy-2-naphthoyl-CoA synthase n=1 Tax=Can... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163793contigH-elongata_contig163793:411..1401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size378
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.1650105-CDS-H-elongata_contig163793:412..6321622929958.1650105-CDS-H-elongata_contig163793:412..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163793 413..632 -
1691679223.4630737-CDS-H-elongata_contig163793:412..6321691679223.4630737-CDS-H-elongata_contig163793:412..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163793 413..632 -
1622929958.1777956-CDS-H-elongata_contig163793:1246..14011622929958.1777956-CDS-H-elongata_contig163793:1246..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163793 1247..1401 -
1691679223.4750347-CDS-H-elongata_contig163793:1246..14011691679223.4750347-CDS-H-elongata_contig163793:1246..1401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163793 1247..1401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163793.4034.1prot_H-elongata_contig163793.4034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163793 413..1401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163793.4034.1

>prot_H-elongata_contig163793.4034.1 ID=prot_H-elongata_contig163793.4034.1|Name=mRNA_H-elongata_contig163793.4034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
ASTLATARHTWRALLVRRRRERFGFSVLSTLPRRLYTWVLSTPSSHLQSS
SRRPSSGAEGSSPTARQLFRASRQPSTQTRTGKRASCSSPATRRGSFTFR
KREKRGKTPSSKRESLSSGRCSPRG
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mRNA from alignment at H-elongata_contig163793:411..1401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163793.4034.1 ID=mRNA_H-elongata_contig163793.4034.1|Name=mRNA_H-elongata_contig163793.4034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=991bp|location=Sequence derived from alignment at H-elongata_contig163793:411..1401- (Himanthalia elongata Himel1 dioecious)
GCTTCGACGCTGGCTACGGCTCGACACACATGGCGCGCATTGTTGGTCAG AAGAAGGCGCGAGAGATTTGGTTTCTCTGTTCTTTCTACTCTGCCAAGGA GGCTCTACACATGGGTCTTGTCAACACCGTCGTCCCACTTGCAGAGCTCG AGCAGGTTAGGGTACCTAATACCTCATACCGTAGCTTTAGGTGGTGGTGG AGATTGTTGCAGAGCAGGGTTAGGATTCCTCGAGTGGTGGTGGATGTTGC TGTAAACAATAACGTAATAGCATATACTGTATAATCATGTAAATCACTCA AGTATAATATAGTATATGGTGCTATAAAAGATCTCACGTACATGCCTTTG GTCCAAAACCAGTTCGTGTTGTAACACAATTAAGATTATTGACGAGGTGT TCAGTGCTGAGCGTTTATCGCGATAAAAAACCGTAGCATTAGCCTTAATA GTCTTAATAGAACATCATCCTTAATATCCGTAATATACTTGATAGATCAA AAGCCTGAATATCCGTAATAGGCTTAATATCTTAGGGTTAGGGTTAGGGT ACCAGACGAAGTAGTCGTGAACCAAGCGGGAAGAGATGGGTCGACGAGAT CGATAGACTCCTCAGTACCGCTGCCGGTCGGTGGGATGTCCATTTGACAA GGCAGCACGTCCATTCGACCCTTTTTATTTAAACCGTTTAGATGTACCGT ACCGTACCGTTTTAACCCCAACCCCCTCTCCTCTCCTCTCCTCTCCTCTA ATACTGTACTGTATGGCAGGAGACCATCAAGTGGTGCCGAAGGATCGTCT CCAACAGCCCGACAGCTCTTTCGTGCCTCAAGGCAGCCCTCAACGCAGAC GAGGACGGGCAAGCGGGCATCATGCAGCTCGCCGGCAACGCGACGAGGCT CTTTTACCTTTCGGAAGAGGGAAAAGAGGGGAAAAACGCCTTCCTCGAAA AGAGAAAGCCTCAGTTCCGGAAGATGCTCTCCTCGAGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig163793:411..1401-

>mRNA_H-elongata_contig163793.4034.1 ID=mRNA_H-elongata_contig163793.4034.1|Name=mRNA_H-elongata_contig163793.4034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig163793:411..1401- (Himanthalia elongata Himel1 dioecious)
GCTTCGACGCTGGCTACGGCTCGACACACATGGCGCGCATTGTTGGTCAG
AAGAAGGCGCGAGAGATTTGGTTTCTCTGTTCTTTCTACTCTGCCAAGGA
GGCTCTACACATGGGTCTTGTCAACACCGTCGTCCCACTTGCAGAGCTCG
AGCAGGCTTCGACGCTGGCTACGGCTCGACACACATGGCGCGCATTGTTG
GTCAGAAGAAGGCGCGAGAGATTTGGTTTCTCTGTTCTTTCTACTCTGCC
AAGGAGGCTCTACACATGGGTCTTGTCAACACCGTCGTCCCACTTGCAGA
GCTCGAGCAGGAGACCATCAAGTGGTGCCGAAGGATCGTCTCCAACAGCC
CGACAGCTCTTTCGTGCCTCAAGGCAGCCCTCAACGCAGACGAGGACGGG
CAAGCGGGCATCATGCAGCTCGCCGGCAACGCGACGAGGCTCTTTTACCT
TTCGGAAGAGGGAAAAGAGGGGAAAAACGCCTTCCTCGAAAAGAGAAAGC
CTCAGTTCCGGAAGATGCTCTCCTCGAGGTGAGACCATCAAGTGGTGCCG
AAGGATCGTCTCCAACAGCCCGACAGCTCTTTCGTGCCTCAAGGCAGCCC
TCAACGCAGACGAGGACGGGCAAGCGGGCATCATGCAGCTCGCCGGCAAC
GCGACGAGGCTCTTTTACCTTTCGGAAGAGGGAAAAGAGGGGAAAAACGC
CTTCCTCGAAAAGAGAAAGCCTCAGTTCCGGAAGATGCTCTCCTCGAGGT
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