mRNA_H-elongata_contig163645.4026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163645.4026.1
Unique NamemRNA_H-elongata_contig163645.4026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163645.4026.1 vs. uniprot
Match: A0A6H5JJU9_9PHAE (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.480e-19
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 SSNLEMAVESMKTGAVNGMPIVFVLDEFERFACRKPQTLLYALLDLCQ 144
            +SNL M V+SMKTGAVNG+P++F+LDEFERFACRKPQTLLYALLDLCQ
Sbjct:  197 TSNLAMMVDSMKTGAVNGVPVIFILDEFERFACRKPQTLLYALLDLCQ 244
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BLAST of mRNA_H-elongata_contig163645.4026.1 vs. uniprot
Match: D7G0P2_ECTSI (Origin recognition complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P2_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.120e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    7 NLEMAVESMKTGAVNGMPIVFVLDEFERFACRKPQTLLYALLDLCQ 144
            NL M V+SMKTGAVNG+P+VFVLDEFERFACRKPQTLLYALLDLCQ
Sbjct:  161 NLAMMVDSMKTGAVNGVPVVFVLDEFERFACRKPQTLLYALLDLCQ 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163645.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJU9_9PHAE2.480e-1983.33Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
D7G0P2_ECTSI6.120e-1989.13Origin recognition complex subunit 4 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163645contigH-elongata_contig163645:148..291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog2880.D7G0P2
Preferred nameORC4
KEGG koko:K02606
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000082,GO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000808,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006267,GO:0006270,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030466,GO:0030554,GO:0031261,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0034285,GO:0034622,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036387,GO:0036388,GO:0040029,GO:0042221,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043565,GO:0043596,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902292,GO:1902299,GO:1902315,GO:1902595,GO:1902597,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA replication origin binding
EggNOG OGsKOG2228@1,KOG2228@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.4871204-UTR-H-elongata_contig163645:147..1621622929957.4871204-UTR-H-elongata_contig163645:147..162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163645 148..162 +
1691679223.1544495-UTR-H-elongata_contig163645:147..1621691679223.1544495-UTR-H-elongata_contig163645:147..162Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163645 148..162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.505304-CDS-H-elongata_contig163645:162..2911622929957.505304-CDS-H-elongata_contig163645:162..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163645 163..291 +
1691679223.1693127-CDS-H-elongata_contig163645:162..2911691679223.1693127-CDS-H-elongata_contig163645:162..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163645 163..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163645.4026.1prot_H-elongata_contig163645.4026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163645 163..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163645.4026.1

>prot_H-elongata_contig163645.4026.1 ID=prot_H-elongata_contig163645.4026.1|Name=mRNA_H-elongata_contig163645.4026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MAVESMKTGAVNGMPIVFVLDEFERFACRKPQTLLYALLDLCQ
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mRNA from alignment at H-elongata_contig163645:148..291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163645.4026.1 ID=mRNA_H-elongata_contig163645.4026.1|Name=mRNA_H-elongata_contig163645.4026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig163645:148..291+ (Himanthalia elongata Himel1 dioecious)
TCTAGCAACCTGGAGATGGCGGTCGAGTCCATGAAAACGGGAGCCGTCAA
CGGCATGCCGATAGTGTTCGTACTGGACGAGTTCGAGCGCTTTGCGTGCC
GCAAGCCGCAGACGCTCTTGTACGCGCTATTGGATCTCTGCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig163645:148..291+

>mRNA_H-elongata_contig163645.4026.1 ID=mRNA_H-elongata_contig163645.4026.1|Name=mRNA_H-elongata_contig163645.4026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig163645:148..291+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTCGAGTCCATGAAAACGGGAGCCGTCAACGGCATGCCGATAGT
GTTCGTACTGGACGAGTTCGAGCGCTTTGCGTGCCGCAAGCCGCAGACGC
TCTTGTACGCGCTATTGGATCTCTGCCAGATGGCGGTCGAGTCCATGAAA
ACGGGAGCCGTCAACGGCATGCCGATAGTGTTCGTACTGGACGAGTTCGA
GCGCTTTGCGTGCCGCAAGCCGCAGACGCTCTTGTACGCGCTATTGGATC
TCTGCCAG
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