mRNA_H-elongata_contig163642.4025.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: D7FKH8_ECTSI (Peptide n-glycanase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH8_ECTSI) HSP 1 Score: 181 bits (459), Expect = 1.280e-50 Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 1
Query: 1 MSVREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSA 324
MSVRE+SSAEFYQLSRR EGKLLV +FTATWCGPCRR+APQYEALA+R P+VEFVKVYEHN+R+AII SGVRSFPTFHFY G KVDECRGA I VEQ QH+ +A
Sbjct: 1 MSVREVSSAEFYQLSRRAEGKLLVTQFTATWCGPCRRIAPQYEALARRMPEVEFVKVYEHNSRDAIIASGVRSFPTFHFYVGGAKVDECRGANIAQVEQKANQHQAAA 108
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: D7G613_ECTSI (PUB domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI) HSP 1 Score: 119 bits (297), Expect = 6.410e-29 Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
V+E++ ++ +GKL+VV+FTA+WCGPC+RVAPQYE LA ++PDV F+KV E +N+E I + +R+FPTF FY G +VDE RGA IQ V V QHK
Sbjct: 2 VQEVAGESEFRRLTGQKGKLVVVDFTASWCGPCKRVAPQYEQLASQHPDVLFLKVVEDSNKELIQSLSIRAFPTFRFYLEGNQVDETRGANIQEVASKVVQHK 104
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A7S3XV36_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV36_HETAK) HSP 1 Score: 110 bits (274), Expect = 8.080e-28 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
V E++ E ++ KL VV+FTATWCGPC+RVAP YE+L+ + PDV F+KV E ++ I G+R+FPTF FY G +VDE +GA I VEQ V H+
Sbjct: 91 VHEVTGTEDFRQQLSAPNKLCVVDFTATWCGPCKRVAPMYESLSHKYPDVNFIKVVESTCQDLITQLGIRAFPTFRFYLGGQQVDEVQGADIGAVEQKVLAHR 193
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A835Z023_9STRA (PUB domain, zinc finger protein thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z023_9STRA) HSP 1 Score: 111 bits (278), Expect = 2.580e-26 Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSAR 327
V E+ E + + +GKL+VV+ +ATWCGPC+RVAP+Y+AL+ + PDV F+KV E N++ I+ GV +FPTF FY +G KVDE +GA I VE+ V +H+ R
Sbjct: 2 VHEVVGQEEFARLTQQKGKLVVVDVSATWCGPCKRVAPEYDALSGKYPDVVFLKVMEGENQDLIMTLGVTAFPTFLFYVDGAKVDEVKGANIAAVEECVVRHRARVR 108
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A4D9D704_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.540e-24 Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 7 VREISSAEFYQLSRRM-EGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSA 324
V+EI+S +L R + G+L+V++FTA+WCGPCR APQ+EA+A+R PDV F KV E N+++ I + G+++FPTF Y N ++E RGA + +E VQ+H+ SA
Sbjct: 2 VQEITSGA--ELRRMVGSGRLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKVVEDNSKDIIASEGIQAFPTFRVYLNSQMLEEFRGANMGALEAAVQRHQASA 106
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A1W0A0E5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0E5_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.510e-23 Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 58 GKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSARYVPAA 342
GKL+VV+FTA+WCGPC+ + P++ A A + P+V F++V E NN + I + G+R FPTFHFY N KVDE GA ++ ++ + SA Y P A
Sbjct: 21 GKLVVVDFTASWCGPCQMIKPRFHAFASQYPNVVFLEVNEANNEDLIHSIGIRGFPTFHFYINKSKVDELVGADPNTLQNKIETWQASAGYNPFA 115
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A8J5BQ48_9DIPT (Uncharacterized protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5BQ48_9DIPT) HSP 1 Score: 97.4 bits (241), Expect = 3.200e-22 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query: 1 MSVREISSAEFYQLSRRMEG-KLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGS 321
MSV+ I+ +Q + G KL+VV+FTATWCGPC+R+AP +E + P F+KV ++ N GV++ PTF FY N K+D +GA ++ +E +QQH GS
Sbjct: 1 MSVKSINDESHFQAELQAAGIKLVVVDFTATWCGPCQRIAPHFETFPSKYPRAIFLKVDVDKCQDTAANQGVQAMPTFIFYRNKSKIDRVQGASVEALEAKIQQHIGS 108
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A7S4K0Z3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4K0Z3_9EUKA) HSP 1 Score: 93.2 bits (230), Expect = 3.490e-22 Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 61 KLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
KL+VV+FTATWCGPC+R+AP + LA++ PDV FVKV N + GV S PTF F G KV E GA +N++Q + +HK
Sbjct: 37 KLVVVDFTATWCGPCKRIAPFFAELAEQMPDVVFVKVDVDENEDVAEACGVNSMPTFQFMIKGKKVHEFSGASQENIKQAIAKHK 121
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A1V9Z195_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z195_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 6.660e-22 Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 1 MSVREI-SSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSARYVPAA 342
M V+E+ S+++ R GKL+V +FTA+WCGPC+ + P++ +A R DV F++V E +N + I + G+R FPTFHFY N KVDE GA ++ ++ + SA Y P A
Sbjct: 1 MGVQEVFGSSDWDAKHRAAGGKLVVADFTASWCGPCQMIKPRFHEMASRYTDVVFLEVNEAHNDDLIHSIGIRGFPTFHFYINQQKVDEMVGADANTLQSKIETWRASAGYNPFA 115
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A6U0IHX1_9STRA (Thioredoxin n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IHX1_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.580e-22 Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 28 EFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
E+ L + KL+VV+FTA+WCGPC+ +AP +E +A NPD+ FVKV + + G+ + PTF FY G +VDE RGA +E V +HK
Sbjct: 9 EWSALMEESKSKLVVVDFTASWCGPCQMIAPVFEKMASENPDITFVKVDVDDAEDIAAACGISAMPTFQFYKGGTRVDEFRGANTSQLEALVAKHK 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig163642.4025.1 >prot_H-elongata_contig163642.4025.1 ID=prot_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MSVREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPback to top mRNA from alignment at H-elongata_contig163642:543..1286- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig163642.4025.1 ID=mRNA_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig163642:543..1286- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig163642:543..1286- >mRNA_H-elongata_contig163642.4025.1 ID=mRNA_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig163642:543..1286- (Himanthalia elongata Himel1 dioecious)back to top |