mRNA_H-elongata_contig163642.4025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163642.4025.1
Unique NamemRNA_H-elongata_contig163642.4025.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: D7FKH8_ECTSI (Peptide n-glycanase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH8_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.280e-50
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 1
Query:    1 MSVREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSA 324
            MSVRE+SSAEFYQLSRR EGKLLV +FTATWCGPCRR+APQYEALA+R P+VEFVKVYEHN+R+AII SGVRSFPTFHFY  G KVDECRGA I  VEQ   QH+ +A
Sbjct:    1 MSVREVSSAEFYQLSRRAEGKLLVTQFTATWCGPCRRIAPQYEALARRMPEVEFVKVYEHNSRDAIIASGVRSFPTFHFYVGGAKVDECRGANIAQVEQKANQHQAAA 108          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: D7G613_ECTSI (PUB domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.410e-29
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
            V+E++    ++     +GKL+VV+FTA+WCGPC+RVAPQYE LA ++PDV F+KV E +N+E I +  +R+FPTF FY  G +VDE RGA IQ V   V QHK
Sbjct:    2 VQEVAGESEFRRLTGQKGKLVVVDFTASWCGPCKRVAPQYEQLASQHPDVLFLKVVEDSNKELIQSLSIRAFPTFRFYLEGNQVDETRGANIQEVASKVVQHK 104          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A7S3XV36_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV36_HETAK)

HSP 1 Score: 110 bits (274), Expect = 8.080e-28
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
            V E++  E ++       KL VV+FTATWCGPC+RVAP YE+L+ + PDV F+KV E   ++ I   G+R+FPTF FY  G +VDE +GA I  VEQ V  H+
Sbjct:   91 VHEVTGTEDFRQQLSAPNKLCVVDFTATWCGPCKRVAPMYESLSHKYPDVNFIKVVESTCQDLITQLGIRAFPTFRFYLGGQQVDEVQGADIGAVEQKVLAHR 193          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A835Z023_9STRA (PUB domain, zinc finger protein thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z023_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.580e-26
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    7 VREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSAR 327
            V E+   E +    + +GKL+VV+ +ATWCGPC+RVAP+Y+AL+ + PDV F+KV E  N++ I+  GV +FPTF FY +G KVDE +GA I  VE+ V +H+   R
Sbjct:    2 VHEVVGQEEFARLTQQKGKLVVVDVSATWCGPCKRVAPEYDALSGKYPDVVFLKVMEGENQDLIMTLGVTAFPTFLFYVDGAKVDEVKGANIAAVEECVVRHRARVR 108          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A4D9D704_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D704_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.540e-24
Identity = 51/107 (47.66%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    7 VREISSAEFYQLSRRM-EGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSA 324
            V+EI+S    +L R +  G+L+V++FTA+WCGPCR  APQ+EA+A+R PDV F KV E N+++ I + G+++FPTF  Y N   ++E RGA +  +E  VQ+H+ SA
Sbjct:    2 VQEITSGA--ELRRMVGSGRLVVIDFTASWCGPCRMAAPQFEAMARRYPDVVFAKVVEDNSKDIIASEGIQAFPTFRVYLNSQMLEEFRGANMGALEAAVQRHQASA 106          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A1W0A0E5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0E5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.510e-23
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   58 GKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSARYVPAA 342
            GKL+VV+FTA+WCGPC+ + P++ A A + P+V F++V E NN + I + G+R FPTFHFY N  KVDE  GA    ++  ++  + SA Y P A
Sbjct:   21 GKLVVVDFTASWCGPCQMIKPRFHAFASQYPNVVFLEVNEANNEDLIHSIGIRGFPTFHFYINKSKVDELVGADPNTLQNKIETWQASAGYNPFA 115          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A8J5BQ48_9DIPT (Uncharacterized protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5BQ48_9DIPT)

HSP 1 Score: 97.4 bits (241), Expect = 3.200e-22
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 MSVREISSAEFYQLSRRMEG-KLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGS 321
            MSV+ I+    +Q   +  G KL+VV+FTATWCGPC+R+AP +E    + P   F+KV     ++   N GV++ PTF FY N  K+D  +GA ++ +E  +QQH GS
Sbjct:    1 MSVKSINDESHFQAELQAAGIKLVVVDFTATWCGPCQRIAPHFETFPSKYPRAIFLKVDVDKCQDTAANQGVQAMPTFIFYRNKSKIDRVQGASVEALEAKIQQHIGS 108          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A7S4K0Z3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4K0Z3_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 3.490e-22
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   61 KLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
            KL+VV+FTATWCGPC+R+AP +  LA++ PDV FVKV    N +     GV S PTF F   G KV E  GA  +N++Q + +HK
Sbjct:   37 KLVVVDFTATWCGPCKRIAPFFAELAEQMPDVVFVKVDVDENEDVAEACGVNSMPTFQFMIKGKKVHEFSGASQENIKQAIAKHK 121          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A1V9Z195_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z195_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.660e-22
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 MSVREI-SSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHKGSARYVPAA 342
            M V+E+  S+++    R   GKL+V +FTA+WCGPC+ + P++  +A R  DV F++V E +N + I + G+R FPTFHFY N  KVDE  GA    ++  ++  + SA Y P A
Sbjct:    1 MGVQEVFGSSDWDAKHRAAGGKLVVADFTASWCGPCQMIKPRFHEMASRYTDVVFLEVNEAHNDDLIHSIGIRGFPTFHFYINQQKVDEMVGADANTLQSKIETWRASAGYNPFA 115          
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Match: A0A6U0IHX1_9STRA (Thioredoxin n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IHX1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.580e-22
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   28 EFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNPDVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQGVQQHK 315
            E+  L    + KL+VV+FTA+WCGPC+ +AP +E +A  NPD+ FVKV   +  +     G+ + PTF FY  G +VDE RGA    +E  V +HK
Sbjct:    9 EWSALMEESKSKLVVVDFTASWCGPCQMIAPVFEKMASENPDITFVKVDVDDAEDIAAACGISAMPTFQFYKGGTRVDEFRGANTSQLEALVAKHK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163642.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH8_ECTSI1.280e-5078.70Peptide n-glycanase, putative n=2 Tax=Ectocarpus T... [more]
D7G613_ECTSI6.410e-2953.40PUB domain, zinc finger protein Thioredoxin n=1 Ta... [more]
A0A7S3XV36_HETAK8.080e-2849.51Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A835Z023_9STRA2.580e-2648.60PUB domain, zinc finger protein thioredoxin n=1 Ta... [more]
A0A4D9D704_9STRA1.540e-2447.66Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1W0A0E5_9STRA4.510e-2347.37Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8J5BQ48_9DIPT3.200e-2242.59Uncharacterized protein n=2 Tax=Bradysia TaxID=355... [more]
A0A7S4K0Z3_9EUKA3.490e-2250.59Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A1V9Z195_9STRA6.660e-2241.74Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6U0IHX1_9STRA8.580e-2243.75Thioredoxin n=1 Tax=Minutocellus polymorphus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163642contigH-elongata_contig163642:543..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue3.1e-43
Seed eggNOG ortholog2880.D7FKH8
Preferred namePNG1
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
GOsGO:0000224,GO:0000302,GO:0001101,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006056,GO:0006058,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009636,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010035,GO:0010188,GO:0010193,GO:0010243,GO:0010498,GO:0014070,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0035966,GO:0035967,GO:0035977,GO:0036211,GO:0036503,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0051787,GO:0051788,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0097466,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904587
EggNOG free text desc.Specifically deglycosylates the denatured form of N- linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl- glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high- mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins
EggNOG OGsKOG0908@1,KOG0908@2759,KOG0909@1,KOG0909@2759
EC3.5.1.52
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.4243784-CDS-H-elongata_contig163642:542..7191622929957.4243784-CDS-H-elongata_contig163642:542..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163642 543..719 -
1691679223.1254103-CDS-H-elongata_contig163642:542..7191691679223.1254103-CDS-H-elongata_contig163642:542..719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163642 543..719 -
1622929957.4405682-CDS-H-elongata_contig163642:1118..12861622929957.4405682-CDS-H-elongata_contig163642:1118..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163642 1119..1286 -
1691679223.1442156-CDS-H-elongata_contig163642:1118..12861691679223.1442156-CDS-H-elongata_contig163642:1118..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163642 1119..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163642.4025.1prot_H-elongata_contig163642.4025.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163642 543..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163642.4025.1

>prot_H-elongata_contig163642.4025.1 ID=prot_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MSVREISSAEFYQLSRRMEGKLLVVEFTATWCGPCRRVAPQYEALAQRNP
DVEFVKVYEHNNREAIINSGVRSFPTFHFYCNGGKVDECRGAIIQNVEQG
VQQHKGSARYVPAA*
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mRNA from alignment at H-elongata_contig163642:543..1286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163642.4025.1 ID=mRNA_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=744bp|location=Sequence derived from alignment at H-elongata_contig163642:543..1286- (Himanthalia elongata Himel1 dioecious)
ATGTCGGTAAGGGAGATATCGAGCGCGGAGTTTTACCAGCTGTCGCGCAG GATGGAGGGCAAACTCTTGGTGGTGGAGTTCACGGCGACTTGGTGCGGGC CATGCCGAAGAGTAGCCCCCCAGTACGAAGCATTGGCGCAGAGGAATCCC GACGTGGAGTTTGTCAAGGTATGGATGCGTGTGTCCTGGTGCTGTTGAAC GTCCAACGATGTCATACAAAAATTGAGATGTCGCCACCGCCATTTCAATC GGTTGTTGGTATTCCGCATCATCTTTAAAAACAAACTTTTACGTAAAAAT CCCGGTGAGGCGTCTAAGTTGCGTCCATAATCTAGTGTGCCGAAGAACCC TGCACCCATGAAAAACCATGGCGTTGCGAGTAGCTGAAGCCTACTCCGCC AGGGTGCTTTTGCCGGTCTGTGGAGGCGCTAACTCTGTGAATGGGTATAT ATATATACCCTTTACGGTTACGCGTGGCGGTTGGTTTGCTTCTCCAGCTC GCGCGCTTCATTGTGGCTCCGTCGGCTGCTGCCAATGATCACCCATGATC ATGAATGAAACTTGTAGGTGTACGAGCACAACAACCGCGAGGCCATCATC AACTCTGGCGTGAGGTCTTTTCCGACCTTTCACTTCTACTGCAACGGGGG AAAAGTCGATGAGTGTCGTGGGGCCATCATACAGAACGTGGAACAGGGGG TGCAACAGCACAAGGGATCGGCGAGGTACGTGCCAGCCGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig163642:543..1286-

>mRNA_H-elongata_contig163642.4025.1 ID=mRNA_H-elongata_contig163642.4025.1|Name=mRNA_H-elongata_contig163642.4025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig163642:543..1286- (Himanthalia elongata Himel1 dioecious)
ATGTCGGTAAGGGAGATATCGAGCGCGGAGTTTTACCAGCTGTCGCGCAG
GATGGAGGGCAAACTCTTGGTGGTGGAGTTCACGGCGACTTGGTGCGGGC
CATGCCGAAGAGTAGCCCCCCAGTACGAAGCATTGGCGCAGAGGAATCCC
GACGTGGAGTTTGTCAAGATGTCGGTAAGGGAGATATCGAGCGCGGAGTT
TTACCAGCTGTCGCGCAGGATGGAGGGCAAACTCTTGGTGGTGGAGTTCA
CGGCGACTTGGTGCGGGCCATGCCGAAGAGTAGCCCCCCAGTACGAAGCA
TTGGCGCAGAGGAATCCCGACGTGGAGTTTGTCAAGGTGTACGAGCACAA
CAACCGCGAGGCCATCATCAACTCTGGCGTGAGGTCTTTTCCGACCTTTC
ACTTCTACTGCAACGGGGGAAAAGTCGATGAGTGTCGTGGGGCCATCATA
CAGAACGTGGAACAGGGGGTGCAACAGCACAAGGGATCGGCGAGGTACGT
GCCAGCCGCGTGAGTGTACGAGCACAACAACCGCGAGGCCATCATCAACT
CTGGCGTGAGGTCTTTTCCGACCTTTCACTTCTACTGCAACGGGGGAAAA
GTCGATGAGTGTCGTGGGGCCATCATACAGAACGTGGAACAGGGGGTGCA
ACAGCACAAGGGATCGGCGAGGTACGTGCCAGCCGCGTGA
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