prot_H-elongata_contig16353.4020.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16353.4020.1
Unique Nameprot_H-elongata_contig16353.4020.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length203
Homology
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 4.830e-93
Identity = 159/230 (69.13%), Postives = 167/230 (72.61%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPML----------------------------AQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARKA 202
            SVFSQFGKIVDIVACRGLKLKGQAWVVFA+KSMATNALRQMQGFPFFEKKMRIQFAK ESDV+TKK GTY+PR+KRK    D + G    LH   P    AP    P                                 A P+P  AGPIGDVPHNILYATGLPPEITQ MLSKLFE YPGF E RMAPGGQAFIEFADQMQAGIALNALNGFKL+AT+PLQLAFARKA
Sbjct:   31 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGN--GLHQAAP----APAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQP--AGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 188 bits (478), Expect = 3.710e-57
Identity = 107/205 (52.20%), Postives = 132/205 (64.39%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGD--VPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            SVFSQFGKI+D+V CRGLKL+GQAWVVFAD   ATNALRQMQGFPFF+K MRI FAK +SDV++K  G+++ REKRK++       APP                PPA   L  P+P  A        P N+L+A  LP +    MLS LF+ Y GF+E RM PG  G AF+EFAD+ QA +AL  L+ FKLT T  L L+FA++
Sbjct:   30 SVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKRE-------APPPKA-------------PPATEALEAPKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 188 bits (477), Expect = 6.140e-57
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRV-----DGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            ++FSQ+GK+++IVAC+G++L+GQAW+V+ D S ATNA+R++QGF F++K +RI FAK +SD++ KK GT+ PR+KR ++       DGA  APP   ++ P             P+   P+P+    + +VPH IL+A  LP E    ML+ LF+ YPGF+E RMAPG  G AFIEF D +QAGIAL  L+GF+L+A   LQL + ++
Sbjct:   29 ALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQSSAMEDGARAAPPPAQYKEP-------------PVAKTPKPI----VNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 186 bits (473), Expect = 3.920e-56
Identity = 107/211 (50.71%), Postives = 132/211 (62.56%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQL--------PSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            S+FSQFGKI++IVACRGLKL+GQAWV FAD + ATNALRQMQGFPF+EK MRI FAK +SD + K+ G Y P +KR++                +        P+  V P     AV  + QP P +      VPH IL+A  LP +  + ML  LF+ Y G++E RM PG  G AFIEF D+MQAG AL  LNGFKLT    LQL++ARK
Sbjct:   32 SIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFT--AVQQVEQPVPAN------VPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.760e-53
Identity = 100/203 (49.26%), Postives = 128/203 (63.05%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            S+FSQFGKI+ I ACRG+KL+GQAWVVF DK+ ATNALRQMQGFPF+EK MRI F+K +SDV+ K+ GTY  R+++          APP           AP    PA P     +  +A    + P+ IL+A GLP +  + +L  LF+ Y GF E RM PG  G AF+EF D+MQAG A+  LNGFKLT    L L++A +
Sbjct:   25 SIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKRK----------APP-----------APAPDAPAQPSAPFAQTTAAAGKNNPPNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.050e-52
Identity = 97/203 (47.78%), Postives = 127/203 (62.56%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            S+FSQFGKI+D+V CRG++L+GQAW+ FAD   AT+A+++MQGFPF++K MRI FAK +SD+I K  GT++ REKRK++       A     HQ P     P  P    P                P N+L+A  LP E  Q ML  LF+ Y G++E RM PG  G AFIEFAD +QA +AL  LNGF L+ TH L L+FA++
Sbjct:   35 SLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRE---SPPAANTDAAHQAPQKKQLPTPPTNLTP----------------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.740e-52
Identity = 104/203 (51.23%), Postives = 127/203 (62.56%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            SVFSQFGKI+D+V CRGLKL+GQAWVVFAD   ATNALRQMQGFPF++K MRI FAK +SD+I K+ GT+ PREKRK++    AA   P     LP+ G AP   PP V                        + LP + +  ML  LF+ Y GF+E RM PG  G AF+EFAD+ QA +A   L+GFKLT T  L L FA++
Sbjct:   30 SVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAA---PAAAKALPAPGDAP---PPKVXXXXX----------XXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.010e-51
Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            SVFSQFGKIV+IVACRGLKL+GQAW+ F     AT+A+ +MQGFPF++K M+I F+K +SD + K+ GT++ REKRK++     A + P       S    P            P+ + A  +   P +IL+A  LP +    MLS LF+TY GF+E RM PG  G AFIEF D++ AG AL  L+GFKLT T  L L+FA++
Sbjct:   45 SVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASKISTPT-----------PQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAKR 236          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A6P8J5F7_ACTTE (U1 small nuclear ribonucleoprotein A-like isoform X1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J5F7_ACTTE)

HSP 1 Score: 173 bits (439), Expect = 7.630e-51
Identity = 96/218 (44.04%), Postives = 137/218 (62.84%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKR---KQQRVDGAAGAPPHLHHQLPSGGVA------------PIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPGGQ--AFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            ++FSQFG I+DIVA + LK++GQ++VVF D + ATNALR MQGFPF++K MRIQ+AK +SD + K  GT++PREK+   K++  + A   P      +P    A            P+M P   PM   P  +      DVP+NIL+ T LP E T+ MLS LF  +PGF+E R+ PG     F+EF +++QAG A +AL GF++T +H + ++FA+K
Sbjct:   29 AIFSQFGPILDIVALKTLKMRGQSFVVFKDIASATNALRSMQGFPFYDKPMRIQYAKSKSDAVAKLEGTFVPREKKPKEKRKAPEAAPARPAKKAQAVPQQIAAVPQVXPGIMPGQPVMAPNVAPMGQPPIGMMQQQAPDVPNNILFLTNLPQETTEMMLSMLFNQFPGFKEVRLVPGRSDITFVEFENEVQAGTAKDALQGFRITPSHAMTISFAKK 246          
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 172 bits (437), Expect = 1.240e-50
Identity = 102/216 (47.22%), Postives = 132/216 (61.11%), Query Frame = 0
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDV-------------PHNILYATGLPPEITQAMLSKLFETYPGFRETRM--APGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 201
            +VFSQFGKI+DIVAC+ LKL+GQAWVVF D + ATNALRQMQGFPF++K MRIQ+AK +SD ++K  GT++ REKRK+   D  A      H        AP   PPA                               P+NIL+A  LP E    M+  LF+ +PGF+E RM  A  G AFIEF D+MQA +AL AL+ FK+T T+P+Q+++A+K
Sbjct:   31 AVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKN--DEKAERKRREHQ-----AEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU9_ECTSI4.830e-9369.13RNA binding / nucleic acid binding n=2 Tax=Ectocar... [more]
F0YDU7_AURAN3.710e-5752.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812Y221_SYMMI6.140e-5746.63Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A6V1NUL1_HETAK3.920e-5650.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UV81_9STRA1.760e-5349.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NJ60_9STRA2.050e-5247.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2X4I1_9STRA2.740e-5251.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DHN7_9STRA2.010e-5147.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P8J5F7_ACTTE7.630e-5144.04U1 small nuclear ribonucleoprotein A-like isoform ... [more]
A0A176VE80_MARPO1.240e-5047.22Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 1..54
e-value: 1.2
score: 5.8
coord: 130..197
e-value: 3.3E-9
score: 46.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 131..188
e-value: 1.0E-10
score: 41.3
coord: 2..51
e-value: 3.8E-7
score: 29.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..58
score: 10.121
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 129..201
score: 12.475
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..71
e-value: 1.3E-16
score: 62.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 125..201
e-value: 4.8E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 2..201
NoneNo IPR availablePANTHERPTHR10501:SF13U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 2..201
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16353contigH-elongata_contig16353:2168..7273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16353.4020.1mRNA_H-elongata_contig16353.4020.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16353 2168..7273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16353.4020.1 ID=prot_H-elongata_contig16353.4020.1|Name=mRNA_H-elongata_contig16353.4020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKK
MRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGV
APIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFE
TYPGFRETRMAPGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFAR
KA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf