mRNA_H-elongata_contig16353.4020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16353.4020.1
Unique NamemRNA_H-elongata_contig16353.4020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: D7FNU9_ECTSI (RNA binding / nucleic acid binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU9_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 4.830e-93
Identity = 159/230 (69.13%), Postives = 167/230 (72.61%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPML----------------------------AQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARKA 606
            SVFSQFGKIVDIVACRGLKLKGQAWVVFA+KSMATNALRQMQGFPFFEKKMRIQFAK ESDV+TKK GTY+PR+KRK    D + G    LH   P    AP    P                                 A P+P  AGPIGDVPHNILYATGLPPEITQ MLSKLFE YPGF E RMAPGGQAFIEFADQMQAGIALNALNGFKL+AT+PLQLAFARKA
Sbjct:   31 SVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNALRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRKLPSADASNGN--GLHQAAP----APAATTPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPQP--AGPIGDVPHNILYATGLPPEITQVMLSKLFEQYPGFSEARMAPGGQAFIEFADQMQAGIALNALNGFKLSATNPLQLAFARKA 252
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: F0YDU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU7_AURAN)

HSP 1 Score: 188 bits (478), Expect = 3.710e-57
Identity = 107/205 (52.20%), Postives = 132/205 (64.39%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGD--VPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            SVFSQFGKI+D+V CRGLKL+GQAWVVFAD   ATNALRQMQGFPFF+K MRI FAK +SDV++K  G+++ REKRK++       APP                PPA   L  P+P  A        P N+L+A  LP +    MLS LF+ Y GF+E RM PG  G AF+EFAD+ QA +AL  L+ FKLT T  L L+FA++
Sbjct:   30 SVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKRE-------APPPKA-------------PPATEALEAPKPAKAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKEVRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A812Y221_SYMMI (Snrpb2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y221_SYMMI)

HSP 1 Score: 188 bits (477), Expect = 6.140e-57
Identity = 97/208 (46.63%), Postives = 140/208 (67.31%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRV-----DGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            ++FSQ+GK+++IVAC+G++L+GQAW+V+ D S ATNA+R++QGF F++K +RI FAK +SD++ KK GT+ PR+KR ++       DGA  APP   ++ P             P+   P+P+    + +VPH IL+A  LP E    ML+ LF+ YPGF+E RMAPG  G AFIEF D +QAGIAL  L+GF+L+A   LQL + ++
Sbjct:   29 ALFSQYGKVIEIVACKGIRLRGQAWIVYQDTSSATNAMRRLQGFNFYDKPLRISFAKTKSDIVAKKDGTFNPRQKRVREEQSSAMEDGARAAPPPAQYKEP-------------PVAKTPKPI----VNNVPHRILFAQNLPDECNDQMLAALFQQYPGFQEVRMAPGKKGIAFIEFQDVVQAGIALQQLSGFQLSAADTLQLTYGKQ 219
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A6V1NUL1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUL1_HETAK)

HSP 1 Score: 186 bits (473), Expect = 3.920e-56
Identity = 107/211 (50.71%), Postives = 132/211 (62.56%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQL--------PSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            S+FSQFGKI++IVACRGLKL+GQAWV FAD + ATNALRQMQGFPF+EK MRI FAK +SD + K+ G Y P +KR++                +        P+  V P     AV  + QP P +      VPH IL+A  LP +  + ML  LF+ Y G++E RM PG  G AFIEF D+MQAG AL  LNGFKLT    LQL++ARK
Sbjct:   32 SIFSQFGKIIEIVACRGLKLRGQAWVCFADTAAATNALRQMQGFPFYEKPMRIAFAKNKSDKVLKREGVYDPAKKRRKMEXXXXXXXXXXXXESVAAMEQEPTPAAVVQPAFT--AVQQVEQPVPAN------VPHRILFAQNLPDDCNEMMLDMLFQQYNGYKEVRMVPGKKGLAFIEFGDEMQAGYALQGLNGFKLTPQDLLQLSYARK 234
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S2UV81_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV81_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.760e-53
Identity = 100/203 (49.26%), Postives = 128/203 (63.05%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            S+FSQFGKI+ I ACRG+KL+GQAWVVF DK+ ATNALRQMQGFPF+EK MRI F+K +SDV+ K+ GTY  R+++          APP           AP    PA P     +  +A    + P+ IL+A GLP +  + +L  LF+ Y GF E RM PG  G AF+EF D+MQAG A+  LNGFKLT    L L++A +
Sbjct:   25 SIFSQFGKIIQITACRGIKLRGQAWVVFQDKASATNALRQMQGFPFYEKPMRIAFSKTKSDVVAKRDGTYTKRKRK----------APP-----------APAPDAPAQPSAPFAQTTAAAGKNNPPNRILFAEGLPDDCNEMVLGMLFKQYIGFSEVRMVPGKSGIAFVEFEDEMQAGYAMTGLNGFKLTPNDTLSLSYAMR 206
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S3NJ60_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ60_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.050e-52
Identity = 97/203 (47.78%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            S+FSQFGKI+D+V CRG++L+GQAW+ FAD   AT+A+++MQGFPF++K MRI FAK +SD+I K  GT++ REKRK++       A     HQ P     P  P    P                P N+L+A  LP E  Q ML  LF+ Y G++E RM PG  G AFIEFAD +QA +AL  LNGF L+ TH L L+FA++
Sbjct:   35 SLFSQFGKILDLVCCRGIRLRGQAWICFADIGAATSAMQKMQGFPFYDKPMRIAFAKSKSDIIAKADGTFVSREKRKRE---SPPAANTDAAHQAPQKKQLPTPPTNLTP----------------PSNVLFAQNLPDECNQNMLVILFQQYTGYKEVRMVPGKKGIAFIEFADDVQASLALAGLNGFSLSPTHALNLSFAKR 218
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A8J2X4I1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4I1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.740e-52
Identity = 104/203 (51.23%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            SVFSQFGKI+D+V CRGLKL+GQAWVVFAD   ATNALRQMQGFPF++K MRI FAK +SD+I K+ GT+ PREKRK++    AA   P     LP+ G AP   PP V                        + LP + +  ML  LF+ Y GF+E RM PG  G AF+EFAD+ QA +A   L+GFKLT T  L L FA++
Sbjct:   30 SVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAATNALRQMQGFPFYDKPMRIAFAKSKSDMIAKRDGTFKPREKRKREDPKPAA---PAAAKALPAPGDAP---PPKVXXXXX----------XXXXXXXXXSNLPEDCSDMMLGILFQQYAGFKEVRMVPGNKGIAFVEFADETQASLARQGLDGFKLTPTDALSLVFAKR 216
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A7S2DHN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHN7_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.010e-51
Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPG--GQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            SVFSQFGKIV+IVACRGLKL+GQAW+ F     AT+A+ +MQGFPF++K M+I F+K +SD + K+ GT++ REKRK++     A + P       S    P            P+ + A  +   P +IL+A  LP +    MLS LF+TY GF+E RM PG  G AFIEF D++ AG AL  L+GFKLT T  L L+FA++
Sbjct:   45 SVFSQFGKIVEIVACRGLKLRGQAWICFETVEAATHAMAKMQGFPFYDKPMKIAFSKTKSDCVAKRDGTFVAREKRKREEKAPRAESEPTAMDTSASKISTPT-----------PQILQAADLNATPSSILFAQNLPEDCNDMMLSMLFKTYAGFKEVRMVPGKKGLAFIEFTDEVSAGSALQGLHGFKLTPTQTLALSFAKR 236
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A6P8J5F7_ACTTE (U1 small nuclear ribonucleoprotein A-like isoform X1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J5F7_ACTTE)

HSP 1 Score: 173 bits (439), Expect = 7.630e-51
Identity = 96/218 (44.04%), Postives = 137/218 (62.84%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKR---KQQRVDGAAGAPPHLHHQLPSGGVA------------PIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFETYPGFRETRMAPGGQ--AFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            ++FSQFG I+DIVA + LK++GQ++VVF D + ATNALR MQGFPF++K MRIQ+AK +SD + K  GT++PREK+   K++  + A   P      +P    A            P+M P   PM   P  +      DVP+NIL+ T LP E T+ MLS LF  +PGF+E R+ PG     F+EF +++QAG A +AL GF++T +H + ++FA+K
Sbjct:   29 AIFSQFGPILDIVALKTLKMRGQSFVVFKDIASATNALRSMQGFPFYDKPMRIQYAKSKSDAVAKLEGTFVPREKKPKEKRKAPEAAPARPAKKAQAVPQQIAAVPQVXPGIMPGQPVMAPNVAPMGQPPIGMMQQQAPDVPNNILFLTNLPQETTEMMLSMLFNQFPGFKEVRLVPGRSDITFVEFENEVQAGTAKDALQGFRITPSHAMTISFAKK 246
[Close]
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Match: A0A176VE80_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VE80_MARPO)

HSP 1 Score: 172 bits (437), Expect = 1.240e-50
Identity = 102/216 (47.22%), Postives = 132/216 (61.11%), Query Frame = 1 
Query:    1 SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKKMRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGVAPIMPPPAVPMLAQPRPVSAGPIGDV-------------PHNILYATGLPPEITQAMLSKLFETYPGFRETRM--APGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFARK 603
            +VFSQFGKI+DIVAC+ LKL+GQAWVVF D + ATNALRQMQGFPF++K MRIQ+AK +SD ++K  GT++ REKRK+   D  A      H        AP   PPA                               P+NIL+A  LP E    M+  LF+ +PGF+E RM  A  G AFIEF D+MQA +AL AL+ FK+T T+P+Q+++A+K
Sbjct:   31 AVFSQFGKILDIVACKTLKLRGQAWVVFDDVTAATNALRQMQGFPFYDKPMRIQYAKSKSDAVSKADGTFVSREKRKKN--DEKAERKRREHQ-----AEAPAAGPPASAYXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNNILFAQNLPREANNLMIEMLFQQFPGFKEVRMIEAKPGIAFIEFGDEMQASVALQALHNFKITPTNPMQISYAKK 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16353.4020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNU9_ECTSI4.830e-9369.13RNA binding / nucleic acid binding n=2 Tax=Ectocar... [more]
F0YDU7_AURAN3.710e-5752.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812Y221_SYMMI6.140e-5746.63Snrpb2 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A6V1NUL1_HETAK3.920e-5650.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UV81_9STRA1.760e-5349.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3NJ60_9STRA2.050e-5247.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2X4I1_9STRA2.740e-5251.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DHN7_9STRA2.010e-5147.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6P8J5F7_ACTTE7.630e-5144.04U1 small nuclear ribonucleoprotein A-like isoform ... [more]
A0A176VE80_MARPO1.240e-5047.22Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16353contigH-elongata_contig16353:2168..7273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue4.6e-74
Seed eggNOG ortholog2880.D7FNU9
Preferred nameSNRPB2
KEGG koko:K11091,ko:K11094
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352
GOsGO:0000003,GO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001650,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007530,GO:0007538,GO:0007539,GO:0007542,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0017069,GO:0018992,GO:0018993,GO:0019099,GO:0019219,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030237,GO:0030532,GO:0030619,GO:0030620,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034401,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0036002,GO:0040029,GO:0042802,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048024,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097157,GO:0097158,GO:0097159,GO:0097525,GO:0097549,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903311,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.snRNA stem-loop binding
EggNOG OGsKOG4206@1,KOG4206@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_003280.1
Exons6
Model size609
Cds size609
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16353.4020.1prot_H-elongata_contig16353.4020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16353 2168..7273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.9869409-CDS-H-elongata_contig16353:2167..22361622929956.9869409-CDS-H-elongata_contig16353:2167..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 2168..2236 +
1691679223.008996-CDS-H-elongata_contig16353:2167..22361691679223.008996-CDS-H-elongata_contig16353:2167..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 2168..2236 +
1622929957.0234387-CDS-H-elongata_contig16353:2660..27621622929957.0234387-CDS-H-elongata_contig16353:2660..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 2661..2762 +
1691679223.0215592-CDS-H-elongata_contig16353:2660..27621691679223.0215592-CDS-H-elongata_contig16353:2660..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 2661..2762 +
1622929957.044517-CDS-H-elongata_contig16353:3782..39871622929957.044517-CDS-H-elongata_contig16353:3782..3987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 3783..3987 +
1691679223.030669-CDS-H-elongata_contig16353:3782..39871691679223.030669-CDS-H-elongata_contig16353:3782..3987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 3783..3987 +
1622929957.0877473-CDS-H-elongata_contig16353:4300..43951622929957.0877473-CDS-H-elongata_contig16353:4300..4395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 4301..4395 +
1691679223.0393012-CDS-H-elongata_contig16353:4300..43951691679223.0393012-CDS-H-elongata_contig16353:4300..4395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 4301..4395 +
1622929957.1079245-CDS-H-elongata_contig16353:4808..48621622929957.1079245-CDS-H-elongata_contig16353:4808..4862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 4809..4862 +
1691679223.0482073-CDS-H-elongata_contig16353:4808..48621691679223.0482073-CDS-H-elongata_contig16353:4808..4862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 4809..4862 +
1622929957.1251698-CDS-H-elongata_contig16353:7189..72731622929957.1251698-CDS-H-elongata_contig16353:7189..7273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 7190..7273 +
1691679223.0588365-CDS-H-elongata_contig16353:7189..72731691679223.0588365-CDS-H-elongata_contig16353:7189..7273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16353 7190..7273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16353.4020.1

>prot_H-elongata_contig16353.4020.1 ID=prot_H-elongata_contig16353.4020.1|Name=mRNA_H-elongata_contig16353.4020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
SVFSQFGKIVDIVACRGLKLKGQAWVVFADKSMATNALRQMQGFPFFEKK
MRIQFAKIESDVITKKTGTYIPREKRKQQRVDGAAGAPPHLHHQLPSGGV
APIMPPPAVPMLAQPRPVSAGPIGDVPHNILYATGLPPEITQAMLSKLFE
TYPGFRETRMAPGGQAFIEFADQMQAGIALNALNGFKLTATHPLQLAFAR
KA*
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mRNA from alignment at H-elongata_contig16353:2168..7273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16353.4020.1 ID=mRNA_H-elongata_contig16353.4020.1|Name=mRNA_H-elongata_contig16353.4020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5106bp|location=Sequence derived from alignment at H-elongata_contig16353:2168..7273+ (Himanthalia elongata Himel1 dioecious)
AGCGTATTCAGCCAGTTCGGCAAGATCGTCGACATCGTGGCTTGTAGGGG
ACTAAAGCTCAAGGGCCAGGTGCGACTGACTGCGACAGTGCCTTCGCGAT
TCGTCGTGAGCCGTCCCTCAAACGAAACAGTGAAGCACATGTAGTGCTAG
GTGGCTCCTAAAGCCACAGCACGTGCGTCGTCGCAGCAGCTAAATACATA
TAAGCGTGTAGCTCTAGCTAAGCTGAAGCAGAGGTTCGTAGGGCTTGTTG
AATGATGAATAACCCTTGTCAAACGCGCGAACAAGAAGGTTTGTTGGCGT
AGCCGCAGCCCCACTCGCATTGTGATACACCCCTGAGAGGGAAGAATGGT
CGCTGTGCACCCTGGCAGAGCTGTGGGGGGAGGGTAGGTGCTACTGCGGC
CATCGTAAATAATATTATTTCCGCTTGTGACTTCGTTTGACGCTTTCTGC
CCCCTCCCCCCTCTCGCTGCCGTTTTTTTACGTGGTGCGGAAGGCCTGGG
TCGTGTTTGCGGATAAGAGCATGGCGACCAATGCTCTCAGGCAGATGCAG
GGGTTCCCGTTCTTCGAGAAAAAAATGAGGATACAGTTCGCCAAGGTTAG
TGTGTTTGTATATCGATTTTGGTGAAACCGATCGTCCTCTGCGCCGACTC
TACCGGTAGGCAATCCGATGGAAGCCTTGAGGACTGCTGACTCAGTGCCG
GCTGACTCTCGGTCGTAAACGCCATCGGTACGCAACTGCGTGACCTGATG
AAATCGGAATTGGTCCGATAGTGGTTGACGGTAATAATGCGGAAAACAAG
AAGGTCCCGGGAGTACGCACCATATTCGGCCTAGGTTGATAAAATGAGCA
GGCTGACGCGGGACGGGACGGCCGATCCCGTTACGCGAGACAGAGAAAAT
ATAGTTTCCCTGTTCAGCTGACCACAAGCAGGGTTGGCAACCATATTCGG
TTGATAGTATAATGGCAACCTCAGTAAATAATACTACCTAAGTATGTATT
TTAGTGCGGAAGTCGCGAGCTCAATTTTATTAACAAGCTTTTGAGAGTGG
GAGTAAGGAATGATCCACCATTAGCTGACGAGTTTTAGGAGGAGTGCTGA
ATTTTCATCGCGATAAAAATCGTAGGGAGGCGTTAACCAACTGGGAAGAA
GAATTGATCCCTTCATAATGCGTCTGCATGCGGAGGTAGTCGGTGGGATT
GGTAATCCATTAGTAGAACTTTAAAGAGCTCATCGACAGAACGTGTAATT
TTACAAATAAAATGAGCCAATAAAATATCCCCTGCTTTGTTGTGGGCTTT
CCATAGAGCCATAGGTAGGCGTGTTTTCGCCGGGGTTTCGACACCGCTCG
TGTTGTGATACGATGGGCTCGTGTTGCAACGGCTGCGGTGGCTCGTGTTA
AGAGTGCGCATCCAACACGAGGATAATTCATGAACTACTTCCGGTACTCA
CAGCAGCTAAGTGTGACCCATAGTGGCGAAAAGTGGGTGTCTGTGTGGAT
GTGGTTTTGCTTTTTCACGAAAAGGAACCGCGGCAAAATTGTCAGCCTAT
GTAACGGCCCTAATTATGCCATCCCACCCTCGGCGGCGATTGATTGCACA
CCGTCCCCTAAAAAGATTGAGAGTGACGTCATCACGAAAAAGACTGGGAC
GTACATACCCCGCGAGAAGCGGAAGCAGCAGCGCGTGGACGGGGCCGCCG
GCGCGCCGCCGCACCTTCACCACCAACTGCCATCAGGCGGAGTGGCCCCT
ATCATGCCCCCTCCTGCTGTCCCGATGCTCGCGCAGCCTCGGCCGGTGTC
TGCCGGTCCGATCGGAGATGGTGAGGAAGAGATGAACGGGGCTTCGGGGG
GGGGGAGAGGTGGGGGTTGAGAAAGAGAGAGTTCGCCGGGACGCTTCCCG
CAACGAATGTACCTTGAGGCACCGTGCGCACAGAGGAGCTGATTTGTGTA
ATAGCTAGCTAGCTGCTGCCTGTCTGTCTGCCCGCATCGCGCGCACGTTC
CTTCCGATAGATGGTCCTAGACCTCTCAAAACATTTCTTTTTGAAGGCGT
GTCGGGGAGGGAATGGAAAGGGGAGGGAAGGCTTCTTTAACGAAATATCT
CTTGCTGTCATGTGTCTCTTGTGCGTGTCGCAGTCCCGCACAACATACTA
TACGCTACCGGTCTTCCGCCAGAGATCACGCAAGCCATGCTTTCGAAGCT
GTTCGAGACATACCCTGGTTTCAGGGAGGTGAGAGGCGCTCGATGGGTTC
CGCGGGGTCAGGAAATATGCAATAATATTATTCCCCCACCCACTCTCCAC
CCAGAACATCCCTCTTGGTAGTAACTCCCTCGAAGAGAGCGTACACAGGT
TTCTTGATAGGAATGCTTTCGGTGCAGGAAGATCCGTGAAAAAGCCAGTC
GTCAACCATGGTCGAGAGGGTTTTGGCCGTTTTTTTATCGACCTTCGATA
ACACCGCTCGCTTTTTACCGTGCGCCAGACGACATTGCTACGACACGATC
CGCCTTGATTACCGATCCTAAAAATATGCTCTTCCTTTCTTCCATCCCGC
CATAAAACACCGCCTTCGAAGGTCTTGAACTAGTTTTTAAATGCAGTGTC
CATGACCTCCCTTGTGTGTTGCGCATCTTCGCCGATAACAGACAAGAATG
GCACCCGGTGGCCAAGCGTTCATCGAGTTCGCCGACCAGATGCAGGTTGG
TTCGGCGTCGGGGAGAGGGGGGGTGGGCTCTCGAAGACGCGAAGACCGAC
GAGTGGGGGCCATTAATATCAGCGTGAACTATAGGGACTTTTTGAAATAT
CTAACACGTTTTTTTAGGCCCAGTCTTATCGTGTTTCGAAAAATTATGTT
TGTAGAATCATAATAATTATAGAAATAAAGTTTGATTTGCAAAAAAACGC
TGCGAGCCATATTAACGGAAAGTGCTCGAACGGTACTGTCGGGCGCTGTT
AACGCCGCTAATATGTAAAACCTCTGTAGTTGTCAGAAAAATCAATCACA
CCACAGACGCAGTAGAAGCACTTGTTGTACTACTGTCTCCCTCGCCAATC
ATGCGTCATCTTCTTAGTCTTCATCGTTTGCTTAGAGTGACTGCACGGTT
GTCTAATGTTGTTGATGGTGGTGGTGGTGACTGTGGTGCTGTTGATTTTT
TGCTTTTGTCGGGGTGCAACTAATCCAGCCCCTGGTCACAAAAAATCAAA
ATTGTACGTTCCAGAAACTGACGTACACGAGAGAGAACAACTTCCGTGGG
GGTGGGGGTGGGATGGGGAGGCTATCACGTCTAAATATAAATATATAACA
AAAATTCCCTTAGCTAAGGGCGGGTATTAACGGGGTTACAAAATTTTTAA
TTCCAGCCGATTTAAATGTAAATCGGGCTCTGATTAATTGAAAGATTAAT
AACGCCTAGCCTTCGACCAATCAGAGCCCGGTTTAAATTTGAATCGACTG
GAAGTGATTTTTTGTGACCCCGTTTATACCCGCCCTAAGGACGCGACGGA
AAGATTCTCGAGACCAAGTTATTGCTCTTCAAAGCGAATAATATGGCGAC
CTGTATATACTTCGGGCCGTGTTATTCATCATTGCAGTAACTGATGTTGT
TGTTGTCTAGACGGCAGTAACTGGGCTACACCGCTCGTTGCTCCAGTCCC
GACTACAAGCTGGGAGAGGTGCTGGTTCCTCGTCGCCGGGGGACCGTTGG
CGTGGTACATGCCAGGAGGAGTTATAGAGTCTGTCTACGTGCTGCTGTTG
TGCTGGTGCCCTGGGTATGCATCATTCATTCGGAAGCCTTCGATCAGCCG
AACACCCCTTTCTTTGATTTTCCATTTATTCAGTGTAAGTCCTTGGGGAC
TTCTTTGGTTTGAAAGATATTTTCAAAAAATCAAAATGTGCCGTCGGTAG
GTCGTAGAACCTCGACCAATCAGAGCCCAATTTTTATATTTATTTTTTCA
AATTTGGTGTTTTAGAAAGACGTTATGACTGGGCCTTAGGAAGCGTTTTT
CATTTTTCATCCTTTATTCGAGCAAAGTGTCCCCGTCCCCGGCTCGTGTG
GCATGTAGCTGTTAAAGTCCTAGTCTTTAAGAGAGAGTTTCTGTAATGTG
TCCTGCGAGCTCAGGGACCTTGGTCGAAGAGTCTTGTCTCTTTCTCCCCA
AAGTGATGAAGCCTATCACATTCCGCAGGATGTCTGCTGAGCAATTTATT
CTTGGGAAACTAAAAAGCAACCGTAGAGTTAGGAGAGTACACTCCGCCCA
TGGTAATTCATGGGCAGATTCTAGTCTTGTATCACACATATACTGTTATG
TATGTGATGCGCGTGCGGCGATCATTTATTCGCGCGGAGATCAAATTCCT
CAGCCGGTACTCGAGAGTATAGTATAGTATAGTGTAATCAATAACGCCCG
CTGAATGTGCAACACCTGATTACCCGGTGTGTTTAGTTAACCCATGGTAT
GGTATGTCCGTTAGGATGTTACACATACTTTTAAAACTATAATAACTACC
AGTACACACCTATCACCTATCTCCTGCCTCACCTCCTATTATTATTTTTT
TCCGGTGAGGCTCGTGATAGCGCACCAAGGGTTGATCGAAAGCGAGACGG
GTGGGGTTTCCACAAAGATTCACGAACTCGAACCAACAAAGGGTCGAGCT
ATCGTCCTGGTGAAATAAAGAAATTTTGTTGGGTAGCTCTAATGTTTATT
GCACAGTGTACACACATTCTCTCTGGAAATGAACTAAATATCATGGCGTA
GTCCGATCCTTGCCCCTTAGTTTTGACTTTTCGCGCTACCCGTGTCAAGT
ACCAACCACCAACCTACGCCTCCCACCCCCCACGCGCGCTTTATATTTAT
CCTTTGCTCGATAGCAACTCCTTTCAGTATTTTTTCAAGCGTAATTGTCC
GTTGTATCCGTGACTCGAAATCGTGCTCTTACAGCCGACCCCGTCTGTGC
TTGTGTTGCCCTTTTTTTCTTTCTCCTTTCCATAACTCTGTTGTTCAATG
TCGCTTTACATCATACCAACAGGCCGGTATCGCTCTTAACGCACTCAACG
GATTCAAGCTCACGGCAACCCACCCCTTGCAGCTAGCTTTTGCGCGCAAG
GCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16353:2168..7273+

>mRNA_H-elongata_contig16353.4020.1 ID=mRNA_H-elongata_contig16353.4020.1|Name=mRNA_H-elongata_contig16353.4020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig16353:2168..7273+ (Himanthalia elongata Himel1 dioecious)
AGCGTATTCAGCCAGTTCGGCAAGATCGTCGACATCGTGGCTTGTAGGGG
ACTAAAGCTCAAGGGCCAGAGCGTATTCAGCCAGTTCGGCAAGATCGTCG
ACATCGTGGCTTGTAGGGGACTAAAGCTCAAGGGCCAGGCCTGGGTCGTG
TTTGCGGATAAGAGCATGGCGACCAATGCTCTCAGGCAGATGCAGGGGTT
CCCGTTCTTCGAGAAAAAAATGAGGATACAGTTCGCCAAGGCCTGGGTCG
TGTTTGCGGATAAGAGCATGGCGACCAATGCTCTCAGGCAGATGCAGGGG
TTCCCGTTCTTCGAGAAAAAAATGAGGATACAGTTCGCCAAGATTGAGAG
TGACGTCATCACGAAAAAGACTGGGACGTACATACCCCGCGAGAAGCGGA
AGCAGCAGCGCGTGGACGGGGCCGCCGGCGCGCCGCCGCACCTTCACCAC
CAACTGCCATCAGGCGGAGTGGCCCCTATCATGCCCCCTCCTGCTGTCCC
GATGCTCGCGCAGCCTCGGCCGGTGTCTGCCGGTCCGATCGGAGATGATT
GAGAGTGACGTCATCACGAAAAAGACTGGGACGTACATACCCCGCGAGAA
GCGGAAGCAGCAGCGCGTGGACGGGGCCGCCGGCGCGCCGCCGCACCTTC
ACCACCAACTGCCATCAGGCGGAGTGGCCCCTATCATGCCCCCTCCTGCT
GTCCCGATGCTCGCGCAGCCTCGGCCGGTGTCTGCCGGTCCGATCGGAGA
TGTCCCGCACAACATACTATACGCTACCGGTCTTCCGCCAGAGATCACGC
AAGCCATGCTTTCGAAGCTGTTCGAGACATACCCTGGTTTCAGGGAGTCC
CGCACAACATACTATACGCTACCGGTCTTCCGCCAGAGATCACGCAAGCC
ATGCTTTCGAAGCTGTTCGAGACATACCCTGGTTTCAGGGAGACAAGAAT
GGCACCCGGTGGCCAAGCGTTCATCGAGTTCGCCGACCAGATGCAGACAA
GAATGGCACCCGGTGGCCAAGCGTTCATCGAGTTCGCCGACCAGATGCAG
GCCGGTATCGCTCTTAACGCACTCAACGGATTCAAGCTCACGGCAACCCA
CCCCTTGCAGCTAGCTTTTGCGCGCAAGGCTTGAGCCGGTATCGCTCTTA
ACGCACTCAACGGATTCAAGCTCACGGCAACCCACCCCTTGCAGCTAGCT
TTTGCGCGCAAGGCTTGA
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