mRNA_H-elongata_contig161660.3934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161660.3934.1
Unique NamemRNA_H-elongata_contig161660.3934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.210e-36
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKVSWA 267
            SAWA D V  YE TAFYLE DTFD CGGH+T  G YHYH T GCLQEQA    G+   +HSP+LGWSYDGFP+YGQLGPGGVEMK+  A
Sbjct:  140 SAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEMKMCGA 224          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 6.100e-36
Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKVSWA 267
            SAWA D V  YE TAFYLE DT D CGGH+T  G YHYH+T GCLQEQA    G+   +HSPLLGWSYDGFP+YGQLGPGGVEMK+  A
Sbjct:  155 SAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEMKMCGA 239          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 7.740e-31
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    1 SAWAAD-TVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEM 252
            S++A D   T+Y   A  L  DT D+CGG +TA G+YHYHN PGCLQEQAM+    T   HSPLLGW+YDGFP+YGQLGP GVEM
Sbjct:   10 SSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM 94          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.000e-20
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   55 EWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEA--GSTVSQ-HSPLLGWSYDGFPVYGQLGPGGVEMK 255
            EW +FD C GHST  G YHYH  P CL  QA  +A  G+TV+  HSP +GW+ DGFP+YG LGPGGVE++
Sbjct:  159 EWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIR 228          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S2G312_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G312_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 8.940e-20
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   19 TVTSYETTAFYLEWDTFDMCGGHS--TARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
            T+T Y T+A YLE +TFD CGGHS  T    YHYH  P CL    + + G    +HSP +GW  DGFPVYG LGP G  M+ 
Sbjct:  104 TLTGYSTSAAYLEGNTFDECGGHSSSTTTPSYHYHVVPSCL----LRQLGMASGEHSPQVGWMADGFPVYGPLGPNGAVMQT 181          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A0M0JHL1_9EUKA (HintN domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHL1_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 1.980e-19
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   22 VTSYETTAFYLEWDTFDMCGGHS--TARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
            +T + T+A YLE +TFD CGGHS  T    YHYH  P CL    +++ G T  QHSP +GW  DGFP+YG LGP GV M+ 
Sbjct:   68 LTGWTTSAAYLEGNTFDQCGGHSSSTTSPSYHYHVAPSCL----LKQLGMTAGQHSPQIGWMADGFPLYGPLGPNGVVMQT 144          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S3JSR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSR1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.680e-18
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   22 VTSYETTAFYLEWDTFDMCGGHSTARGI--YHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
            +TSYET+A +LE DTFD CG HS    +  YH H  P CL    + + G T S HSP +GW+ DGFPVYG  GP G+ M+ 
Sbjct:   11 MTSYETSAVFLEGDTFDECGCHSADSQVASYHCHIPPSCL----LSQLGQTESSHSPQIGWAADGFPVYGPRGPDGIMMQT 87          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S3ZWN8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWN8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.020e-17
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   55 EWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
            EW +FD C GHS+  G YHYH  P CL  QA +EA      HS  +GW+ DGFP+YG LGPGGVE++
Sbjct:  206 EWISFDCCSGHSSGTGGYHYHFPPSCLIAQANKEA-PIAGGHSAQIGWAQDGFPIYGPLGPGGVEIR 271          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU)

HSP 1 Score: 84.3 bits (207), Expect = 2.660e-17
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   55 EWDTFDMCGGHSTA-----RGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
            EW +FD CGGH+        G YHYH  P CL+ Q     G+    HSP +GWS DGFP+YG+LGPGGV M+
Sbjct:  129 EWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTME 196          
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A8J2X2K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2K6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.790e-17
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   31 YETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
            Y+ TA   EW +FD C GHS+  G YHYH  P CL  QA  +A  +   HS  +GW+ DGFP+YG LGPGGVE++
Sbjct:  170 YDDTA---EWISFDCCSGHSSGTGGYHYHFPPSCLIAQANADAPISDG-HSSQIGWAQDGFPIYGPLGPGGVEIR 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP42_9PHAE1.210e-3669.66YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI6.100e-3669.66YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LCJ6_ECTSI7.740e-3162.35YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J2WVX8_9STRA8.000e-2058.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2G312_9EUKA8.940e-2051.22Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0JHL1_9EUKA1.980e-1951.85HintN domain-containing protein n=1 Tax=Chrysochro... [more]
A0A7S3JSR1_9STRA1.680e-1850.62Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S3ZWN8_9STRA1.020e-1755.22Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
R1DKM5_EMIHU2.660e-1751.39YHYH domain-containing protein n=1 Tax=Emiliania h... [more]
A0A8J2X2K6_9STRA9.790e-1752.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161660contigH-elongata_contig161660:646..1443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.5e-30
Seed eggNOG ortholog2880.D7FUL4
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.4406579-CDS-H-elongata_contig161660:645..7231622929947.4406579-CDS-H-elongata_contig161660:645..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161660 646..723 -
1691679219.142662-CDS-H-elongata_contig161660:645..7231691679219.142662-CDS-H-elongata_contig161660:645..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161660 646..723 -
1622929947.4593441-CDS-H-elongata_contig161660:1239..14431622929947.4593441-CDS-H-elongata_contig161660:1239..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161660 1240..1443 -
1691679219.1527658-CDS-H-elongata_contig161660:1239..14431691679219.1527658-CDS-H-elongata_contig161660:1239..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161660 1240..1443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161660.3934.1prot_H-elongata_contig161660.3934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161660 646..1443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161660.3934.1

>prot_H-elongata_contig161660.3934.1 ID=prot_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAM
EEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKVSWAFVKQ*
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mRNA from alignment at H-elongata_contig161660:646..1443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161660.3934.1 ID=mRNA_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig161660:646..1443- (Himanthalia elongata Himel1 dioecious)
AGCGCATGGGCTGCGGACACCGTTACGTCCTACGAAACTACGGCCTTTTA CCTCGAGTGGGACACGTTCGACATGTGCGGGGGCCACTCCACGGCTAGGG GGATTTATCACTACCACAACACACCCGGATGCCTCCAGGAGCAGGCCATG GAGGAAGCCGGGAGCACCGTTAGCCAGCACTCGCCATTGCTGGGGTGGTC ATACGTAAGCCTAACCCCCCCGCCCCTCGCGTCCTGAAAGGGACATGCTG CTCGAACCGGTCTGTACGTCAAACCTCTTAAATATTGTACGTGGCTGGTA TGGTAGCAACCCCATCCCTTTGCCTGCTACACCCTTACCCCCTCCACCCC CCCCCCCAGAAGACAAGACAAAACAGTGCTCTTTTCGTGCCGAGATGAGA GGAAAAGTTTGGCGATCATTCCCCGTTCCTTGGCTTCTTTTCGCCGGGAA GACGAGAAAAAACGTTTCCGTTGTTTTTTTAAGTGTTTTATCAATAATGT ATTAGCCTGACACATACACATGATACGTACGCACACACGTGCACGTACAT AAATTAACTTACAAGGAAAGCGTGCACGTGGAACATCCGCCTCCGTCACG GCTATCTCGGTTGGTGCTTTGTGCTCCTGGCCTGACACGCTACGATAGTC ATCCGCCCTTTCTCAGCCCCCCCCTCCACATTGTTTTGATCCTCGGGGTC CAATTTTTCTCCTTTTCTAGGACGGATTTCCGGTATACGGACAGCTCGGG CCTGGCGGAGTGGAAATGAAGGTAAGTTGGGCTTTCGTAAAGCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig161660:646..1443-

>mRNA_H-elongata_contig161660.3934.1 ID=mRNA_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig161660:646..1443- (Himanthalia elongata Himel1 dioecious)
AGCGCATGGGCTGCGGACACCGTTACGTCCTACGAAACTACGGCCTTTTA
CCTCGAGTGGGACACGTTCGACATGTGCGGGGGCCACTCCACGGCTAGGG
GGATTTATCACTACCACAACACACCCGGATGCCTCCAGGAGCAGGCCATG
GAGGAAGCCGGGAGCACCGTTAGCCAGCACTCGCCATTGCTGGGGTGGTC
ATACAGCGCATGGGCTGCGGACACCGTTACGTCCTACGAAACTACGGCCT
TTTACCTCGAGTGGGACACGTTCGACATGTGCGGGGGCCACTCCACGGCT
AGGGGGATTTATCACTACCACAACACACCCGGATGCCTCCAGGAGCAGGC
CATGGAGGAAGCCGGGAGCACCGTTAGCCAGCACTCGCCATTGCTGGGGT
GGTCATACGACGGATTTCCGGTATACGGACAGCTCGGGCCTGGCGGAGTG
GAAATGAAGGTAAGTTGGGCTTTCGTAAAGCAATAAGACGGATTTCCGGT
ATACGGACAGCTCGGGCCTGGCGGAGTGGAAATGAAGGTAAGTTGGGCTT
TCGTAAAGCAATAA
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