mRNA_H-elongata_contig161660.3934.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.210e-36 Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKVSWA 267
SAWA D V YE TAFYLE DTFD CGGH+T G YHYH T GCLQEQA G+ +HSP+LGWSYDGFP+YGQLGPGGVEMK+ A
Sbjct: 140 SAWAVDAVVEYEDTAFYLEADTFDPCGGHATPTGAYHYHGTAGCLQEQA----GAVKGEHSPVLGWSYDGFPIYGQLGPGGVEMKMCGA 224
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI) HSP 1 Score: 136 bits (342), Expect = 6.100e-36 Identity = 62/89 (69.66%), Postives = 68/89 (76.40%), Query Frame = 1
Query: 1 SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKVSWA 267
SAWA D V YE TAFYLE DT D CGGH+T G YHYH+T GCLQEQA G+ +HSPLLGWSYDGFP+YGQLGPGGVEMK+ A
Sbjct: 155 SAWALDAVEEYEDTAFYLEADTLDPCGGHATPTGSYHYHSTAGCLQEQA----GAVAGEHSPLLGWSYDGFPIYGQLGPGGVEMKMCGA 239
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI) HSP 1 Score: 117 bits (294), Expect = 7.740e-31 Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 1 SAWAAD-TVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEM 252
S++A D T+Y A L DT D+CGG +TA G+YHYHN PGCLQEQAM+ T HSPLLGW+YDGFP+YGQLGP GVEM
Sbjct: 10 SSYADDRAATTYGAAAAKLHGDTTDLCGGSTTADGVYHYHNAPGCLQEQAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEM 94
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 8.000e-20 Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 55 EWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEA--GSTVSQ-HSPLLGWSYDGFPVYGQLGPGGVEMK 255
EW +FD C GHST G YHYH P CL QA +A G+TV+ HSP +GW+ DGFP+YG LGPGGVE++
Sbjct: 159 EWISFDCCSGHSTGSGGYHYHFPPSCLLAQADADAPVGTTVANGHSPQIGWAQDGFPIYGPLGPGGVEIR 228
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S2G312_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G312_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 8.940e-20 Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 19 TVTSYETTAFYLEWDTFDMCGGHS--TARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
T+T Y T+A YLE +TFD CGGHS T YHYH P CL + + G +HSP +GW DGFPVYG LGP G M+
Sbjct: 104 TLTGYSTSAAYLEGNTFDECGGHSSSTTTPSYHYHVVPSCL----LRQLGMASGEHSPQVGWMADGFPVYGPLGPNGAVMQT 181
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A0M0JHL1_9EUKA (HintN domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JHL1_9EUKA) HSP 1 Score: 91.3 bits (225), Expect = 1.980e-19 Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 22 VTSYETTAFYLEWDTFDMCGGHS--TARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
+T + T+A YLE +TFD CGGHS T YHYH P CL +++ G T QHSP +GW DGFP+YG LGP GV M+
Sbjct: 68 LTGWTTSAAYLEGNTFDQCGGHSSSTTSPSYHYHVAPSCL----LKQLGMTAGQHSPQIGWMADGFPLYGPLGPNGVVMQT 144
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S3JSR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSR1_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.680e-18 Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 22 VTSYETTAFYLEWDTFDMCGGHSTARGI--YHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMKV 258
+TSYET+A +LE DTFD CG HS + YH H P CL + + G T S HSP +GW+ DGFPVYG GP G+ M+
Sbjct: 11 MTSYETSAVFLEGDTFDECGCHSADSQVASYHCHIPPSCL----LSQLGQTESSHSPQIGWAADGFPVYGPRGPDGIMMQT 87
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A7S3ZWN8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWN8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.020e-17 Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 55 EWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
EW +FD C GHS+ G YHYH P CL QA +EA HS +GW+ DGFP+YG LGPGGVE++
Sbjct: 206 EWISFDCCSGHSSGTGGYHYHFPPSCLIAQANKEA-PIAGGHSAQIGWAQDGFPIYGPLGPGGVEIR 271
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: R1DKM5_EMIHU (YHYH domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKM5_EMIHU) HSP 1 Score: 84.3 bits (207), Expect = 2.660e-17 Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 55 EWDTFDMCGGHSTA-----RGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
EW +FD CGGH+ G YHYH P CL+ Q G+ HSP +GWS DGFP+YG+LGPGGV M+
Sbjct: 129 EWTSFDFCGGHARCLAFECNGDYHYHFPPSCLETQI----GNLTDGHSPQIGWSLDGFPIYGRLGPGGVTME 196
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Match: A0A8J2X2K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2K6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 9.790e-17 Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 31 YETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMEEAGSTVSQHSPLLGWSYDGFPVYGQLGPGGVEMK 255
Y+ TA EW +FD C GHS+ G YHYH P CL QA +A + HS +GW+ DGFP+YG LGPGGVE++
Sbjct: 170 YDDTA---EWISFDCCSGHSSGTGGYHYHFPPSCLIAQANADAPISDG-HSSQIGWAQDGFPIYGPLGPGGVEIR 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161660.3934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig161660.3934.1 >prot_H-elongata_contig161660.3934.1 ID=prot_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp SAWAADTVTSYETTAFYLEWDTFDMCGGHSTARGIYHYHNTPGCLQEQAMback to top mRNA from alignment at H-elongata_contig161660:646..1443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig161660.3934.1 ID=mRNA_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at H-elongata_contig161660:646..1443- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig161660:646..1443- >mRNA_H-elongata_contig161660.3934.1 ID=mRNA_H-elongata_contig161660.3934.1|Name=mRNA_H-elongata_contig161660.3934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig161660:646..1443- (Himanthalia elongata Himel1 dioecious)back to top |