mRNA_H-elongata_contig16065.3885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16065.3885.1
Unique NamemRNA_H-elongata_contig16065.3885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: D8LHK0_ECTSI (6-pyruvoyltetrahydropterin synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK0_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 2.970e-59
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLVGEE 333
            MHGATYTVDAEFKTDALVEKSNWVVDIGAASEML++VLSKYNFKNLNE+FP +NTTTEFMCKV          IFDE+ AKCG  FHGTLCIKLWESHKAW CYEG VGEE
Sbjct:   58 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLAAVLSKYNFKNLNEIFPGQNTTTEFMCKV----------IFDELAAKCGKDFHGTLCIKLWESHKAWGCYEGDVGEE 158          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A7S4DL62_HETAK (6-pyruvoyltetrahydropterin synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL62_HETAK)

HSP 1 Score: 142 bits (357), Expect = 5.160e-41
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLV 324
            MHGATYTVD EF+ + LV+K NWVVDIG ASE+LS+VL KYNFKNLNELFP++NTTTEFMCK           IFD+I A C + F G++C+KL ESHKAWA Y G V
Sbjct:   54 MHGATYTVDVEFEAEELVDKCNWVVDIGEASEILSNVLRKYNFKNLNELFPDDNTTTEFMCKA----------IFDDIAA-CLENFKGSMCVKLHESHKAWASYTGDV 150          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A7S2V5M2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5M2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.570e-39
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYE 315
            +HGATYTVD EF  D L  K NWV+DIG ASE+L  VL+KYNFKNL+ELFP++NTTTEFMCKV          IFD++ A+  + F G+L +KLWESHKAWA Y+
Sbjct:   55 LHGATYTVDVEFMADVLESKCNWVIDIGLASEILGKVLAKYNFKNLDELFPDDNTTTEFMCKV----------IFDDMSAELANKFKGSLSVKLWESHKAWASYQ 149          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A836CJP8_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.050e-38
Identity = 64/110 (58.18%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLVGE 330
            MHGATYT D EF    L    NWV+DIG AS MLS VL++YNFKNLNE+FP+ENTTTEFMC+           IFD +   C   F GT+ +KLWESHKAWA YEG V +
Sbjct:   35 MHGATYTCDVEFCCPELTPSLNWVIDIGEASNMLSGVLAEYNFKNLNEVFPDENTTTEFMCRR----------IFDGVARACAGRFCGTIRVKLWESHKAWASYEGAVAD 134          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: W7T312_9STRA (6-pyruvoyltetrahydropterin synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T312_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.800e-36
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPE-ENTTTEFMCK-VH-SLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLV 324
            +HGATYTVD  F++  LV K+NWV+DIG AS  LS +LSKYNFKNL+++FPE ENTTTEFMC+ +H  L   FC            + F G++C+KLWESHKAWACYE +V
Sbjct:   58 IHGATYTVDVTFRSKNLVPKNNWVIDIGEASTALSRILSKYNFKNLDQVFPEGENTTTEFMCRAIHRDLAAHFC----TNRAKSKEERFKGSICVKLWESHKAWACYEAIV 164          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: L1J9Q7_GUITC (6-pyruvoyltetrahydropterin synthase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J9Q7_GUITC)

HSP 1 Score: 122 bits (307), Expect = 6.200e-33
Identity = 58/111 (52.25%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLVGEE 333
            MHGATYTVD EF  ++L  + NWV+DIG    ML  VL +YNFKNLNELFP ENTTTEFMCK           IF+ +  +    F G++ +KLWESH AWA Y   +G +
Sbjct:   88 MHGATYTVDVEFHVESLAPRLNWVLDIGEGMTMLKKVLGEYNFKNLNELFPGENTTTEFMCKK----------IFEGLCVELKGKFKGSITVKLWESHSAWASYTNDIGAD 188          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: B7FYC8_PHATC (6-pyruvoyltetrahydropterin synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYC8_PHATC)

HSP 1 Score: 120 bits (302), Expect = 1.400e-32
Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPE-ENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLV 324
            MHGATYT D EF  D L   +NWV+DIG ASE+L +VL+KYN KNL+E+FP  + TTTEFMCK   +  +       +++ +    FHG +C+KLWESHKAWA Y G+V
Sbjct:   54 MHGATYTCDVEFSKDTLDPDTNWVMDIGKASELLCTVLAKYNLKNLDEVFPNGQLTTTEFMCKQIHMDLV-------DLIRREFHDFHGEVCVKLWESHKAWAAYSGVV 155          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A7R9WRW2_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRW2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 5.500e-31
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEEN-TTTEFMCKVHSLTTLFCFVIFDEIVAK----CGDAFHGTLCIKLWESHKAWACYEGL 321
            MHGATYT D EF+TD+L  ++NWV+DIG ASE++S VL +YN +NL+E+FP++  TTTEFM +           I D+I A+    C D F G +C+KLWESHKAWA Y G+
Sbjct:   63 MHGATYTCDVEFQTDSLHPETNWVIDIGKASEIVSDVLKRYNLQNLDEVFPDKTMTTTEFMARQ----------IHDDIQARLATDCAD-FQGQVCVKLWESHKAWASYTGM 163          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A7S2R056_9STRA (6-pyruvoyltetrahydropterin synthase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R056_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.900e-30
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPEEN-TTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLV 324
            MHGATYT D EF  + L   +NWV+DIG AS++LS +L+KYN KNL+E+F ++  TTTEFMC+        C  I +++  +  D FHG LC+KLWESHKAWA Y+  +
Sbjct:   35 MHGATYTCDVEFACEELDSDANWVIDIGKASDILSEILAKYNLKNLDEIFGDDILTTTEFMCRE------ICQGIAEKVREQVPD-FHGDLCVKLWESHKAWASYQQSI 136          
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Match: A0A7S2A892_TRICV (6-pyruvoyltetrahydropterin synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A892_TRICV)

HSP 1 Score: 114 bits (284), Expect = 1.600e-29
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELFPE-ENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKAWACYEGLV 324
            MHGATYT D EF+T  L  + NWV+DIG AS++L+SVLS+YN KNL+E+FP+ E TTTEFMC+V  +    C  + +E     G  F G + +KLWESHKAW  Y G V
Sbjct:   84 MHGATYTCDVEFRTSHLHPECNWVIDIGLASDVLTSVLSRYNMKNLDEVFPDGEMTTTEFMCRV--IHEDLCRRLKEE-----GAEFEGEIRVKLWESHKAWGSYVGEV 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16065.3885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK0_ECTSI2.970e-5981.086-pyruvoyltetrahydropterin synthase n=2 Tax=Ectoca... [more]
A0A7S4DL62_HETAK5.160e-4164.816-pyruvoyltetrahydropterin synthase n=1 Tax=Hetero... [more]
A0A7S2V5M2_9STRA2.570e-3960.956-pyruvoyltetrahydropterin synthase n=1 Tax=Fibroc... [more]
A0A836CJP8_9STRA4.050e-3858.186-pyruvoyltetrahydropterin synthase n=1 Tax=Tribon... [more]
W7T312_9STRA2.800e-3657.666-pyruvoyltetrahydropterin synthase n=3 Tax=Monodo... [more]
L1J9Q7_GUITC6.200e-3352.256-pyruvoyltetrahydropterin synthase n=3 Tax=Guilla... [more]
B7FYC8_PHATC1.400e-3253.216-pyruvoyltetrahydropterin synthase n=2 Tax=Phaeod... [more]
A0A7R9WRW2_9STRA5.500e-3152.686-pyruvoyltetrahydropterin synthase n=1 Tax=Craspe... [more]
A0A7S2R056_9STRA2.900e-3051.386-pyruvoyltetrahydropterin synthase n=1 Tax=Eucamp... [more]
A0A7S2A892_TRICV1.600e-2954.136-pyruvoyltetrahydropterin synthase n=1 Tax=Triere... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16065contigH-elongata_contig16065:6412..7028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue2e-45
Seed eggNOG ortholog2880.D8LHK0
EggNOG free text desc.6-pyruvoyl tetrahydropterin synthase
EggNOG OGs2CYMG@1,2S557@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog description6-pyruvoyl tetrahydropterin synthase/QueD family protein
Ec32 orthologEc-10_002190.1
Exons2
Model size360
Cds size360
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.6192183-CDS-H-elongata_contig16065:6411..65551622929942.6192183-CDS-H-elongata_contig16065:6411..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 6412..6555 -
1691679217.1489272-CDS-H-elongata_contig16065:6411..65551691679217.1489272-CDS-H-elongata_contig16065:6411..6555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 6412..6555 -
1622929942.644393-CDS-H-elongata_contig16065:6812..70281622929942.644393-CDS-H-elongata_contig16065:6812..7028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 6813..7028 -
1691679217.159617-CDS-H-elongata_contig16065:6812..70281691679217.159617-CDS-H-elongata_contig16065:6812..7028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16065 6813..7028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16065.3885.1prot_H-elongata_contig16065.3885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16065 6412..7028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16065.3885.1

>prot_H-elongata_contig16065.3885.1 ID=prot_H-elongata_contig16065.3885.1|Name=mRNA_H-elongata_contig16065.3885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MHGATYTVDAEFKTDALVEKSNWVVDIGAASEMLSSVLSKYNFKNLNELF
PEENTTTEFMCKVHSLTTLFCFVIFDEIVAKCGDAFHGTLCIKLWESHKA
WACYEGLVGEEDIRDPSQG*
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mRNA from alignment at H-elongata_contig16065:6412..7028-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16065.3885.1 ID=mRNA_H-elongata_contig16065.3885.1|Name=mRNA_H-elongata_contig16065.3885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig16065:6412..7028- (Himanthalia elongata Himel1 dioecious)
ATGCACGGGGCCACGTACACCGTAGACGCAGAGTTCAAGACCGACGCCCT CGTGGAAAAATCGAACTGGGTTGTGGACATCGGCGCCGCTTCTGAAATGC TGTCATCCGTCCTGTCCAAATACAACTTCAAGAACCTCAACGAGCTCTTC CCTGAGGAAAATACTACCACCGAATTCATGTGTAAGGTACACTCGCTAAC CACGCTGTTTTGTTTTGTTTTGTTTTTGTACGAAGGGTGGGATAGGAAAT TGAAGAGACTTCGATCGAGCCTTGATTTGTGACCCCTTTTCAAGACTTGG TGTAAAGTACATCGTTGTTCACGATCAATCGCTCAAGGTCACTTCTGTTC TGACCACGATCATTATATTGTCTTCATCTTAACCCCTCTCTAGTAGTTCG ACAACTGATCAGCCACTAGCGATGGCATTTTCACGAGCCCCAGTTCTCCT CTCTTTCGGCATCCACTATATAGGTGATATTCGACGAAATCGTGGCGAAG TGTGGGGATGCTTTCCATGGCACTTTGTGTATCAAGCTATGGGAAAGCCA CAAAGCGTGGGCGTGTTACGAAGGGCTTGTGGGCGAAGAAGACATCCGAG ACCCTTCACAAGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16065:6412..7028-

>mRNA_H-elongata_contig16065.3885.1 ID=mRNA_H-elongata_contig16065.3885.1|Name=mRNA_H-elongata_contig16065.3885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig16065:6412..7028- (Himanthalia elongata Himel1 dioecious)
ATGCACGGGGCCACGTACACCGTAGACGCAGAGTTCAAGACCGACGCCCT
CGTGGAAAAATCGAACTGGGTTGTGGACATCGGCGCCGCTTCTGAAATGC
TGTCATCCGTCCTGTCCAAATACAACTTCAAGAACCTCAACGAGCTCTTC
CCTGAGGAAAATACTACCACCGAATTCATGTGTAAGGTACACTCGCTAAC
CACGCTGTTTTGTTTTATGCACGGGGCCACGTACACCGTAGACGCAGAGT
TCAAGACCGACGCCCTCGTGGAAAAATCGAACTGGGTTGTGGACATCGGC
GCCGCTTCTGAAATGCTGTCATCCGTCCTGTCCAAATACAACTTCAAGAA
CCTCAACGAGCTCTTCCCTGAGGAAAATACTACCACCGAATTCATGTGTA
AGGTACACTCGCTAACCACGCTGTTTTGTTTTGTGATATTCGACGAAATC
GTGGCGAAGTGTGGGGATGCTTTCCATGGCACTTTGTGTATCAAGCTATG
GGAAAGCCACAAAGCGTGGGCGTGTTACGAAGGGCTTGTGGGCGAAGAAG
ACATCCGAGACCCTTCACAAGGGTAGGTGATATTCGACGAAATCGTGGCG
AAGTGTGGGGATGCTTTCCATGGCACTTTGTGTATCAAGCTATGGGAAAG
CCACAAAGCGTGGGCGTGTTACGAAGGGCTTGTGGGCGAAGAAGACATCC
GAGACCCTTCACAAGGGTAG
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