mRNA_H-elongata_contig16055.3881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16055.3881.1
Unique NamemRNA_H-elongata_contig16055.3881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: D7FQV8_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 1.000e-117
Identity = 263/711 (36.99%), Postives = 343/711 (48.24%), Query Frame = 1
Query:    1 RRTAVLFVIVAVSVACSGAKLPLLRNSTAEEWLAYIAKGLNLDLLGRHFEEVGSAILCTSAVTFTTLLMYPLNVWAS--------SLPSASSRNDRPYIFVGMGTVALIWGITLWASGRFHWGVASGLIVALQSTSLTMKLVSFFQACRSEC------------------MVDDRPRGDGGMDESCNDQVRPTPGRGGAQGEDRSN---------DACG------LSFGEFTFFLVLAPSLVCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLASTVHSG----WSDANSWIDVSAWEVLKVEGNGDWLHNVA-------LTAGGAWLGE-----EDLDNKNGGRANVDVIVIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYPDRNIYGPWWLVMDDIRVYFRMWSAPVSHWLAASVQRPMLEAGRQAA--GRRASVA-------------GGR------RVRGSGGSCGG------DGTILWRWWFASVVCSFLVSGLLHEAVGFVALRQTVWPFNTMFLAMSAIITPWWDLLFPAVRARSASESTPNXXXXXXXXXXXXXXXXXXXXXXXXXRNA---------------DKAVNKGQPHIHLFSATREAPRGTPGAPPGRLCSTGAGETISDGDLGSGTAMSRPAIGIYRGWFAVVFYFAASLPMTLMVDYLLWQWWRQTVMVR 1836
            +RT+ L V+VA+S+A SGA      +S+AE W  Y+AKG++L LL +HF  + SA+ C    T T+ L+YP+    S        +LP     +              +W           WG+ASGL V LQ  +LT+K VSF Q  R                     + ++   GD     S    + P   R   Q + RSN         D C       L+F EF FFLVLAPSLVC P  L+  +RR P +   ASEFLHA L ++AVH  CSA +AP  RVLA  +HSG    W+D   W      E+ + +G+G WLH+ +        + GG+ +G            + G  +  + V  AA LG+FV SPM HFLMFY F+H VCLG AE++GYPDRN YGPWWLV+DD+R YFR+WSAPV  WL+ SVQRPM+E G++ A   RR  VA             GG       R +G+  + GG      D  I+ RWW ASVVCSFLVSG++HEAVGFVA+R+TVWPF+T FLA++A + P+WD LFP V   S   + P                           +A                              A      G P            G+  S+          RP IG  RGW AVV Y    +P+TL+VDY +WQWWR T M  
Sbjct:   36 QRTSALLVVVAMSIAASGADGSGGSSSSAE-WGVYLAKGMHLALLQKHFGGMVSALGCMVMGTVTSFLVYPIYQRCSPAAIQNPRALPCRRVSSTTAKTIAAAVPSMAVWXXXXXXXXXXXWGIASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVAAAHEDLDAAGVAENADEGDRAAAASGKLAISPAR-RSVLQRDPRSNSPSSTANGDDGCAHAANPALTFREFAFFLVLAPSLVCRPQYLKSGARRPPRVAAAASEFLHAGLTYVAVHVACSALFAPALRVLAEALHSGGVAGWADEEDWA-----ELRRTDGSGWWLHDSSRSIGSLFASGGGSCVGGGVGCVPGWTFADDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADAGIVTRWWLASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTSTPGTRPTGRRAFTSIAAAGGDGVGFSAETEAANSAAVPRTAXXXXXXXXXXXXXXXXXXXXXXXXAADGQHAGHPSKDVANKNGVVTGQQGSEAPRLGRKEPLRPKIGRRRGWAAVVVYGGMYMPLTLVVDYCVWQWWRHTHMAE 739          
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.040e-85
Identity = 234/758 (30.87%), Postives = 319/758 (42.08%), Query Frame = 1
Query:    4 RTAVLFVIVAVSVACSGAKLPLLRNSTA------EEWLAYIAKGLNLDLLGRHFEEVGSAILCTSAVTFTTLLMYPLNVWASSLPSA--------------------------SSRNDRPYI-----FVGMGTVALIWGITLWASGRFHWGVASGLIVALQSTSLTMKLVSFFQA-CRSECMVDDRPRGDGGMDESCNDQVRPTPGRGGAQGED--RSNDACG---LSFGEFTFFLVLAPSLVCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLASTVHS--------------------GWSDANS------------------WIDVSAW---EVLKVEG-NGDWLHNVALTAGGAWLGE----EDLDNKNGGRANVDV--IVIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYPDRNIYGPWWLVMDDIRVYFRMWSAPVSHWLAASVQRPMLEAGRQAAGRRASVAGGRRVRGSGGSC----------------------------------GGDGTILWRWW-FASVVCSFLVSGLLHEAVGFVALRQTVWPFNTMFLAMSAIITPWWDLLFP--AVRARSASESTPNXXXXXXXXXXXXXXXXXXXXXXXXXRNADKAVNKGQPHIHLFSATREAPRGTPGAPPGR----------LCSTGAGETISDGDLGSGT------------AMSRPAIGIYRGWFAVVFYFAASLPMTLMVDYLLWQWWRQTV 1827
            RT  L  + A S   SGA  P  R  T+      ++W A++ KGL LDLL RHFE +G A+ C   +    +L YPL++  +  PSA                          S  +  P++      V   T   IW + +W S    WG+ASGL V L S  L++K  SF Q+ CR    V                +    PG G    E+  R +D  G   L+ GEF FF++ APSLVC    LR+ +RR P   R  SEF HA LVF+A+H  CSAF+APV RVLAS V S                    G S   S                  W+D   W   E +   G +G W  ++ L  GG+        E L     G A +     + AA+ L M V SPM HF+ FYGFWHCVCLG AE+WGYPDRN YGPWWL+ ++    +R+WS PV  W+++ + RP++     A  +    +GG R   +G SC                                         W W    ++  +FL S L+HEAV FVA+R+T WP +T  L +S  +   WD ++P  ++ + SA+ S  +                           +          I   S   E   GT                 L    AG + + GD   GT            + ++ A   +RGW AV F+  ASL M L  D+L+WQWWR T+
Sbjct:   41 RTVALLALAACSAKFSGAAAPSARFETSAASTVVDDWTAFLTKGLALDLLARHFEGIGKALACMFVMALVAILAYPLHLLITRSPSAVPAGGAGTGQAESERCSPGSQRRQLSSLSSSSPFLPLLSALVVASTTLPIWALAVWGSVNLDWGLASGLSVGLLSACLSLKNASFAQSWCRFNAPVTTAKEAA---------ETAGAPGGGARPREEVCRDDDRAGPPLLTLGEFLFFILAAPSLVCEQEFLRERARRAPRPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVLASAVFSPPSPSLAAESAHEALACDFRGGSSGGSGGGEYTCGGLPSIGAMIGWVDCVGWAGAEGIHTAGRSGGWFFSLLLDGGGSETAVASYFESLFCGGAGGAGLAGWWAIAAASALAMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSSGGVRRGLAGTSCREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSAASGEDRGGRHGTGPPAEPALWPSSSAATGSQPCATTTATDISCGSRVAETSDGTLEDHSENSYVVVEQARDLGEQHAGTSKNGGDSSCGTGGGGGVDGAGRVSKTKKAGSEWRGWGAVAFFEGASLVMGLAFDFLMWQWWRHTL 789          
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 1.690e-84
Identity = 232/759 (30.57%), Postives = 317/759 (41.77%), Query Frame = 1
Query:    4 RTAVLFVIVAVSVACSGAKLPLL------RNSTAEEWLAYIAKGLNLDLLGRHFEEVGSAILCTSAVTFTTLLMYPLNVWASSLPSA---------SSRNDR--------------------PYI-----FVGMGTVALIWGITLWASGRFHWGVASGLIVALQSTSLTMKLVSFFQA-CRSECMVDDRPRGDGGMDESCNDQVRPTPGRGGAQGEDRSN-DACG---------LSFGEFTFFLVLAPSLVCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLASTVHS-------------------------------GWSDANS----WIDVSAWE----VLKVEGNGDWLHNVALTAGGAWLGE----EDLDNKNGGRANVDVI--VIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYPDRNIYGPWWLVMDDIRVYFRMWSAPVSHWLAASVQRPML--------EAGRQAAGRRASVAGGRRVRGSGGSCGGDGTIL------------------WRWW-FASVVCSFLVSGLLHEAVGFVALRQTVWPFNTMFLAMSAIITPWWDLLFP--AVRARSASESTPNXXXXXXXXXXXXXXXXXXXXXXXXXRNADKAVNKGQPHIHLFSATREAPRGT------------------------PGAPPGRLCSTGAGETISDGDLGSGTAMSRPAIGI-YRGWFAVVFYFAASLPMTLMVDYLLWQWWRQTVM 1830
            RT  L  + A S   SGA  P         ++  +EW A++ KGL LDLL RHFE +G A+ C   +     L YPL++  +  PSA          + ++R                    P++      V   T   IW + +W S    WG+ASGL V L S  L++K  SF Q+ C     V            +  +    T    G  GE RS  D CG         L+FGEF FF++ APSLVC P  LRK +RR P   R  SEF HA LVF+A+H  CSAF+APV RV+A+ V S                               G S  N     W+D   W     +    G+G W  ++ L  GG         E L     G A +     + AA+ L M V SPM HF+ FYGFWHCVCLG AE+WGYPDRN YGPWWL+ ++    +R+WS PV  W+++ + RP++        + GR   G R  +AG    +                               W W    ++  +FL S L+HEAV FVA+R+T WP +T  L +S  +   WD ++P  ++ + SA+ S  +                           +          +   S   E   GT                                C TG G  +     G+G   +    G  +RGW AV F+  ASL M L VD+L+WQWWR T++
Sbjct:   41 RTVALLALAACSAKFSGAAAPSADFETPAASTVVDEWTAFLTKGLALDLLARHFEGIGKALACMFVMALVATLAYPLHLLITRPPSAVPAGGAGKGQAESERRSPGSQRRQLSSLXXXXXXSPFLPLLSAMVVASTTLPIWTLAVWGSVNLDWGLASGLSVGLLSACLSLKSASFAQSWCCFNAPVT-----------TAKEAAEATGAPSG--GETRSREDVCGDGDLAGPPLLTFGEFLFFILAAPSLVCEPEFLRKHARRAPCPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVVAAAVFSTPSPSLVGESAQAALASDFRGCGSGDGEHTCGGSPFNGATIGWVDCVGWAGAEGIHTAGGSGGWFFSLLLDGGGPETAAISYFESLFCGGAGGAGLAGWWGIAAASALAMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPVVGHKNAAFSQPGRSGGGVRRGLAGTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDSGDRHGTGPPAEQAVLPSSSAATRSQPGATATAADVSCGSTVVETSDGTLEDHSEKSYVVVDQARDLGEQHAITSKNGSDSCGTGGGGGVD----GAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRHTLL 782          
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: A0A6H5KXI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI3_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 2.190e-77
Identity = 188/492 (38.21%), Postives = 247/492 (50.20%), Query Frame = 1
Query:    1 RRTAVLFVIVAVSVACSGAKLPLLRNSTAEEWLAYIAKGLNLDLLGRHFEEVGSAILCTSAVTFTTLLMYPLNVWASSLPSASSRNDR--PYIFVGMGTV----ALIWGITLWASGRFH-----WGVASGLIVALQSTSLTMKLVSFFQACR---SECMVD--------DRPR-----GDGGMDESCNDQVRPTPGRGGA-QGEDRSNDAC---------------GLSFGEFTFFLVLAPSLVCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLASTVHSG----WSDANSWIDVSAWEVLKVEGNGDWLHNVA------------------LTAGGAWLGEEDLDNKNGGRANVDVIVIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYPDRNIYG----------------------------PWWLVMDDIRVYFRMWSAPVSHWLAASVQRPMLEAGRQAAGRR 1197
            +RT+ L V+VA+S+A SG       NS   EW  Y+AKG++L LL +HFE + SA+ C +  T T+ L+YP+    S    A+ +N R  P   V   T     A +  + +WA          WGVASGL V LQ  +LT+K VSF Q  R   +E  +         D  R      DG    + + Q+  +P R    QG+ RSN                   L+F EF FFL LAPSLVC P  L   +RR P +   ASEFLHA L ++AVH  CSA +AP  RVLA  +HSG    W+D   W      E+ + +G+G WL++ +                  +  G  W   +D      G  +  + V  AA LG+FV SPM HFLMFY F+H VCLG AE++GYPDRN YG                            PWWLV+DD+R YFR+WSAPV  WL+ SVQRPM+E G++ A RR
Sbjct:   36 QRTSALLVVVAMSIAASGGDGSGRSNSA--EWGVYLAKGMHLTLLQKHFEGIVSALGCMAMGTVTSFLVYPIYQRCSP---AAIQNPRAPPCRRVSSATAKTIAAAVPSMAVWAXXXXXXXXXXWGVASGLCVGLQCAALTLKSVSFVQKARPVAAEAAIAVVAAHEDLDAARVAANADDGDRAAAASGQLAISPARRSVLQGDPRSNPPSPTANGDDGGARAANPALTFREFAFFLALAPSLVCQPQYLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAGVLHSGGVAGWADEEDWA-----ELRRTDGSGWWLYDSSGSLGSLFASGGGGCVHGGVGCGPGWTFSDD------GTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGELSFSLVGDRFTPSAGLEGQALRHDSAGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRR 511          
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: D7FUK9_ECTSI (Sterol or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 8.140e-72
Identity = 168/496 (33.87%), Postives = 246/496 (49.60%), Query Frame = 1
Query:   40 VACSGAKLPLLRNSTAE-EWLAYIAKGLNLDLLGRHFEEVGSAILCTSAVTFTTLLMYPLNVW-------------ASSLPSASSRNDRP---YIF-VGMGTVALIWGITLWASGRFHWGVASGLIVALQSTSLTMKLVSFFQACRSECMVDDRPRGDGGMDESCNDQVRPTPGRGGAQGEDRSNDACGLSFGEFTFFLVLAPSLVCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLASTVHSGWSDANSWIDVSAWEVLKVEGNGDWLHNVALTAGGAWLGEEDLDNKNGGRANVDVIVIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYPDRNIYGPWWLVMDDIRVYFRMWSAPVSHWLAASVQRPMLE----AGRQAAGRRASVAGGRRVRGSGGSCGGDGTILWRW-WFASVVCSFLVSGLLHEAVGFVALRQTVWPFNTMFLAMSAIITPWWDLLFPAVRARSASES 1458
            +A SG  +P    + A  EWL +  + + +D L  HFE +G+       V   ++L+YPL+               A++ PS S    RP   Y+  VG+ + A +W   +WA  R  WG+  GL +AL    +T+K+ SF  A      V   P                           RS     L+FGE+ FFL L+PSLVC    ++  +RR    LR ASEF HA L FL  H    +  AP  R+  S V  GW +  +    + W  L+  G   W    + TAG A L   D ++  G R    V +    W+ +FV+S   HF++FY FWHC+CLG AE+WG+PDRN+YG WWL+ D+ R + RMWS PV  WL+  V  PMLE    +     G ++  +    +  +     GD +   +W W  +V+ +F+VSG+ HEAV ++A+R T WPFNT  L +  ++  +WD++FP    + +SES
Sbjct:    1 MALSGVPVPAADGTVAAAEWLDFAFRSMAIDRLVHHFEGMGTGFAAMGVVASISILVYPLHSLLSPRTTPATTDNTATAAPS-SDGGGRPVGTYVAAVGLPSAA-VWAFAVWAQRRAAWGLVPGLWLALFCACVTLKITSFVAASA----VATPPXXXXXXXXXXXXXXXXXXXXXXXXAGPRS-----LTFGEYLFFLFLSPSLVCEVRLMKVSARRRSRPLRAASEFFHAVLTFLCAHCVVGSILAPSLRLFFSAVSPGWVEGAA----AGWAELEAAGGAGW---PSWTAGSALLAGGDKEDS-GTRLGQLVALGCFLWM-LFVVSSALHFMVFYAFWHCICLGMAELWGFPDRNLYGCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLELCSTSDEGVDGTKSPPSA--ELSTATAEVAGDPS---KWTWVPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPLPDLKPSSES 471          
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Match: A0A6H5KWE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.340e-10
Identity = 54/188 (28.72%), Postives = 71/188 (37.77%), Query Frame = 1
Query: 1345 LRQTVWPFNTMFLAMSAIITPWWDLLFPAVRARSASESTPNXXXXXXXXXXXXXXXXXXXXXXXXXRNADKAVNKGQPHIHLFSATREAPRGTPGAPPGRLCSTGAGETISDGDLG----------------SGTAMSR--------PAIGIYRGWFAVVFYFAASLPMTLMVDYLLWQWWRQTVMVR 1836
            +R+TVWPF+T FLA++A + P+WD LFP V    A  STP                            A+ +       +   +A     +GT  A  G       GE       G                 G+   R        P IG  RGW A V Y    +P+ L+VDY +WQWWR T M  
Sbjct:    1 MRRTVWPFSTFFLAVTASMAPFWDTLFPVV----ADTSTPGTRPTGRRAFASIAAGGSDGGGTSAETEAENSAA-----VPSTAARPTTAQGTVNACSGNDIGAENGEPADGQHAGHPSKGVANKNRVVTGQQGSEAPRLGRKGAPWPKIGRRRGWAAAVVYGGMYMPLALVVDYFVWQWWRHTHMAE 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16055.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQV8_ECTSI1.000e-11736.99Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpu... [more]
A0A6H5J9L7_9PHAE1.040e-8530.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW2_ECTSI1.690e-8430.57Sterol or diacylglycerol O-acyltransferase n=1 Tax... [more]
A0A6H5KXI3_9PHAE2.190e-7738.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUK9_ECTSI8.140e-7233.87Sterol or diacylglycerol O-acyltransferase, partia... [more]
A0A6H5KWE0_9PHAE7.340e-1028.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16055contigH-elongata_contig16055:3558..6582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size2454
Cds size1839
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16055.3881.1prot_H-elongata_contig16055.3881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16055 4173..6582 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.1677527-UTR-H-elongata_contig16055:3557..41721622929942.1677527-UTR-H-elongata_contig16055:3557..4172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16055 3558..4172 -
1691679216.9567058-UTR-H-elongata_contig16055:3557..41721691679216.9567058-UTR-H-elongata_contig16055:3557..4172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16055 3558..4172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929942.1884167-CDS-H-elongata_contig16055:4172..49451622929942.1884167-CDS-H-elongata_contig16055:4172..4945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 4173..4945 -
1691679216.9694815-CDS-H-elongata_contig16055:4172..49451691679216.9694815-CDS-H-elongata_contig16055:4172..4945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 4173..4945 -
1622929942.2037752-CDS-H-elongata_contig16055:5177..60671622929942.2037752-CDS-H-elongata_contig16055:5177..6067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 5178..6067 -
1691679216.9794059-CDS-H-elongata_contig16055:5177..60671691679216.9794059-CDS-H-elongata_contig16055:5177..6067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 5178..6067 -
1622929942.2188797-CDS-H-elongata_contig16055:6406..65821622929942.2188797-CDS-H-elongata_contig16055:6406..6582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 6407..6582 -
1691679216.996878-CDS-H-elongata_contig16055:6406..65821691679216.996878-CDS-H-elongata_contig16055:6406..6582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16055 6407..6582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16055.3881.1

>prot_H-elongata_contig16055.3881.1 ID=prot_H-elongata_contig16055.3881.1|Name=mRNA_H-elongata_contig16055.3881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=613bp
RRTAVLFVIVAVSVACSGAKLPLLRNSTAEEWLAYIAKGLNLDLLGRHFE
EVGSAILCTSAVTFTTLLMYPLNVWASSLPSASSRNDRPYIFVGMGTVAL
IWGITLWASGRFHWGVASGLIVALQSTSLTMKLVSFFQACRSECMVDDRP
RGDGGMDESCNDQVRPTPGRGGAQGEDRSNDACGLSFGEFTFFLVLAPSL
VCHPSQLRKCSRRLPNILRGASEFLHAALVFLAVHTTCSAFYAPVNRVLA
STVHSGWSDANSWIDVSAWEVLKVEGNGDWLHNVALTAGGAWLGEEDLDN
KNGGRANVDVIVIAAAWLGMFVLSPMQHFLMFYGFWHCVCLGSAEVWGYP
DRNIYGPWWLVMDDIRVYFRMWSAPVSHWLAASVQRPMLEAGRQAAGRRA
SVAGGRRVRGSGGSCGGDGTILWRWWFASVVCSFLVSGLLHEAVGFVALR
QTVWPFNTMFLAMSAIITPWWDLLFPAVRARSASESTPNSKPSSKTSVQE
TPAEPDKDGSQNSARNADKAVNKGQPHIHLFSATREAPRGTPGAPPGRLC
STGAGETISDGDLGSGTAMSRPAIGIYRGWFAVVFYFAASLPMTLMVDYL
LWQWWRQTVMVR*
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mRNA from alignment at H-elongata_contig16055:3558..6582-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16055.3881.1 ID=mRNA_H-elongata_contig16055.3881.1|Name=mRNA_H-elongata_contig16055.3881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3025bp|location=Sequence derived from alignment at H-elongata_contig16055:3558..6582- (Himanthalia elongata Himel1 dioecious)
CGTAGGACAGCGGTTCTGTTCGTGATCGTGGCGGTGTCTGTTGCCTGCTC TGGCGCGAAGTTGCCACTGCTTCGGAACTCCACCGCTGAGGAATGGCTCG CCTACATCGCCAAAGGGCTGAACCTCGACCTGCTTGGGCGGCACTTCGAA GAGGTCGGTTCAGCGATTCTGTGCACGTGAGTGCGTATGAGCATACATGC AAGAGCACGTAGAGCGTGTTCATATTCATGCGTGATCTACCGCAGGTCAT CCGTCGAATCCAGATATTCGAATCCATGGATGTATGTGCGCGTTGTATCA TTTCACCGCAACTGCTGCTGAGCGCTTTCCATTTCACCCTGGCAATGGAA TGCGACCGAATATCGTTGTACGATGATGGGTGCAAGTTGCCCTTGCACCC AAAATGATTGGAGTTAGAATAGCACGCATTGGTCCCTATTTCCGTCTAAG GCTGAAAGCCGCTCGCATGATATGAAAATATTCGTTCTTGCATTCAATCA ACCTTGCGTCCACAGGTCAGCCGTGACGTTTACAACTCTCCTAATGTATC CACTGAACGTGTGGGCGTCTTCTTTGCCATCTGCCTCCTCAAGAAACGAC CGCCCATATATTTTCGTTGGCATGGGGACGGTTGCCCTCATTTGGGGTAT CACCCTATGGGCTTCAGGACGGTTCCACTGGGGTGTGGCGTCGGGTCTGA TCGTTGCCCTCCAGAGCACCAGTCTCACGATGAAGTTGGTGTCCTTCTTT CAGGCTTGCAGATCAGAGTGCATGGTAGATGATCGACCGAGAGGCGACGG CGGCATGGATGAAAGCTGCAATGATCAGGTTCGGCCAACCCCTGGAAGAG GTGGAGCACAGGGCGAGGACCGTAGCAACGACGCCTGTGGGTTGAGCTTC GGAGAATTCACGTTTTTTCTCGTCCTCGCACCCTCTTTGGTATGCCACCC AAGTCAGCTAAGAAAGTGCTCCCGGCGGTTGCCAAACATCCTCCGTGGGG CTTCCGAATTCTTGCACGCGGCGTTGGTGTTCCTAGCGGTGCATACCACC TGCTCGGCTTTCTACGCTCCCGTGAACCGGGTACTCGCGTCGACGGTACA CTCCGGCTGGTCAGACGCTAACTCTTGGATTGACGTCAGCGCATGGGAGG TGCTGAAAGTAGAAGGTAACGGCGACTGGTTGCACAACGTGGCGCTTACT GCGGGAGGCGCATGGCTCGGAGAAGAAGATCTCGATAATAAAAATGGTGG ACGGGCAAATGTTGACGTCATCGTCATTGCCGCCGCGTGGCTCGGTATGT TCGTGCTTTCGCCGATGCAGCACTTCCTCATGTTTTACGGGTTCTGGCAC TGCGTTTGTCTGGGCTCTGCTGAGGTTTGGGGCTACCCGGATCGCAACAT CTACGGTGCGGAGTAATCTTGATGCATAATCCCGCGTTGATGTTTCTGGT GGGCAAATATTGGGACCCGTGATACAATTGCTGCGAGCGCTTTTGTGAAA TTAAAGCCTCCCTGTACGTCGCATATGCTGAAGTCCTCCGATCTCGCAAG TCACTATACCGCAATGTAGTAAGTTTTGATCTAATACCTTATTTGTGCCT GCGCGTTCTTCTCTTGACCACATCAATCGCTTCCCAGGCCCTTGGTGGCT TGTTATGGACGACATCCGTGTTTATTTTCGCATGTGGTCAGCGCCCGTTT CTCACTGGCTGGCCGCCAGCGTGCAGCGGCCCATGCTCGAGGCCGGGCGG CAGGCGGCAGGACGCCGTGCTAGCGTCGCAGGTGGAAGGAGAGTTCGTGG TAGTGGTGGAAGCTGCGGTGGTGATGGCACCATCCTCTGGCGCTGGTGGT TCGCCTCCGTCGTGTGCTCGTTTCTTGTGTCAGGGCTGCTCCATGAGGCT GTTGGCTTCGTTGCTTTGCGGCAAACGGTATGGCCCTTTAATACGATGTT TCTTGCAATGAGTGCCATAATAACTCCTTGGTGGGATTTGCTGTTCCCCG CCGTGCGCGCCCGATCCGCCAGCGAATCTACCCCGAATTCCAAACCGTCT TCTAAGACTTCCGTGCAGGAAACCCCCGCGGAACCAGATAAAGACGGATC CCAAAATAGCGCTCGAAATGCCGACAAGGCCGTAAACAAAGGCCAGCCGC ATATTCACCTCTTTTCGGCCACTAGAGAAGCCCCTCGCGGTACGCCTGGT GCACCGCCAGGACGATTGTGCTCCACGGGGGCTGGAGAAACGATTAGCGA TGGTGACCTGGGCTCGGGGACCGCAATGTCTCGCCCGGCGATCGGGATCT ACCGAGGCTGGTTCGCGGTAGTCTTTTACTTTGCTGCATCTCTGCCGATG ACCTTAATGGTGGACTATCTCTTGTGGCAGTGGTGGCGACAAACCGTCAT GGTACGTTAGTTTGTAACGGTACACGTGGGGTGGTTGGCATGACGGATTT TCCCGTGAAGGTTTGTTTCAACTATACATTTTTCGGTAGTTTGATGAGTA TAAATGCGCACGTTATTTTCGGCGGAAACTCGAGCAAGAGCAACGTTTTT CACCGCCAGCGCTTGGCCGTAGTATCCCTCATTGTGGCTGACGGCGCTAG TATAGTACAGGGCGCTCCCATAGGTTTACGTCCCGCTCCCCCTCCTTCAA TTTTATGGATTGCCATTGCCAGAGAAACTTTGAATGTTTGCCGGCAAGAT GTGGCGAGTCGTGTTTTGGTTGGCTGGAAAGATTACGGCGTCGTAATGTA GTTATTATTAAAAACATATGAACTCATTAGAACCCTTCGAACATCCACGC CTTCTTAGCACCATGAGAGGTCCAGCGGACTTATGTTCTGCTACTGGTAA GTATACTTACTTCTTTGTTTTTGTACCTAATACGTGTGTGATTCCACGGT GTATTTTGATGTACAAGAGCGAGATGTTGTTATCAACTGAAAATGCAGTG TTTATACGAACACGTTTGGACATCCTTATGGGAATCACGTGAAACTGTTA TTAATAGTAACGCAGCCTTGCCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig16055:3558..6582-

>mRNA_H-elongata_contig16055.3881.1 ID=mRNA_H-elongata_contig16055.3881.1|Name=mRNA_H-elongata_contig16055.3881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3678bp|location=Sequence derived from alignment at H-elongata_contig16055:3558..6582- (Himanthalia elongata Himel1 dioecious)
CGTAGGACAGCGGTTCTGTTCGTGATCGTGGCGGTGTCTGTTGCCTGCTC
TGGCGCGAAGTTGCCACTGCTTCGGAACTCCACCGCTGAGGAATGGCTCG
CCTACATCGCCAAAGGGCTGAACCTCGACCTGCTTGGGCGGCACTTCGAA
GAGGTCGGTTCAGCGATTCTGTGCACCGTAGGACAGCGGTTCTGTTCGTG
ATCGTGGCGGTGTCTGTTGCCTGCTCTGGCGCGAAGTTGCCACTGCTTCG
GAACTCCACCGCTGAGGAATGGCTCGCCTACATCGCCAAAGGGCTGAACC
TCGACCTGCTTGGGCGGCACTTCGAAGAGGTCGGTTCAGCGATTCTGTGC
ACGTCAGCCGTGACGTTTACAACTCTCCTAATGTATCCACTGAACGTGTG
GGCGTCTTCTTTGCCATCTGCCTCCTCAAGAAACGACCGCCCATATATTT
TCGTTGGCATGGGGACGGTTGCCCTCATTTGGGGTATCACCCTATGGGCT
TCAGGACGGTTCCACTGGGGTGTGGCGTCGGGTCTGATCGTTGCCCTCCA
GAGCACCAGTCTCACGATGAAGTTGGTGTCCTTCTTTCAGGCTTGCAGAT
CAGAGTGCATGGTAGATGATCGACCGAGAGGCGACGGCGGCATGGATGAA
AGCTGCAATGATCAGGTTCGGCCAACCCCTGGAAGAGGTGGAGCACAGGG
CGAGGACCGTAGCAACGACGCCTGTGGGTTGAGCTTCGGAGAATTCACGT
TTTTTCTCGTCCTCGCACCCTCTTTGGTATGCCACCCAAGTCAGCTAAGA
AAGTGCTCCCGGCGGTTGCCAAACATCCTCCGTGGGGCTTCCGAATTCTT
GCACGCGGCGTTGGTGTTCCTAGCGGTGCATACCACCTGCTCGGCTTTCT
ACGCTCCCGTGAACCGGGTACTCGCGTCGACGGTACACTCCGGCTGGTCA
GACGCTAACTCTTGGATTGACGTCAGCGCATGGGAGGTGCTGAAAGTAGA
AGGTAACGGCGACTGGTTGCACAACGTGGCGCTTACTGCGGGAGGCGCAT
GGCTCGGAGAAGAAGATCTCGATAATAAAAATGGTGGACGGGCAAATGTT
GACGTCATCGTCATTGCCGCCGCGTGGCTCGGTATGTTCGTGCTTTCGCC
GATGCAGCACTTCCTCATGTTTTACGGGTTCTGGCACTGCGTTTGTCTGG
GCTCTGCTGAGGTTTGGGGCTACCCGGATCGCAACATCTACGGTCAGCCG
TGACGTTTACAACTCTCCTAATGTATCCACTGAACGTGTGGGCGTCTTCT
TTGCCATCTGCCTCCTCAAGAAACGACCGCCCATATATTTTCGTTGGCAT
GGGGACGGTTGCCCTCATTTGGGGTATCACCCTATGGGCTTCAGGACGGT
TCCACTGGGGTGTGGCGTCGGGTCTGATCGTTGCCCTCCAGAGCACCAGT
CTCACGATGAAGTTGGTGTCCTTCTTTCAGGCTTGCAGATCAGAGTGCAT
GGTAGATGATCGACCGAGAGGCGACGGCGGCATGGATGAAAGCTGCAATG
ATCAGGTTCGGCCAACCCCTGGAAGAGGTGGAGCACAGGGCGAGGACCGT
AGCAACGACGCCTGTGGGTTGAGCTTCGGAGAATTCACGTTTTTTCTCGT
CCTCGCACCCTCTTTGGTATGCCACCCAAGTCAGCTAAGAAAGTGCTCCC
GGCGGTTGCCAAACATCCTCCGTGGGGCTTCCGAATTCTTGCACGCGGCG
TTGGTGTTCCTAGCGGTGCATACCACCTGCTCGGCTTTCTACGCTCCCGT
GAACCGGGTACTCGCGTCGACGGTACACTCCGGCTGGTCAGACGCTAACT
CTTGGATTGACGTCAGCGCATGGGAGGTGCTGAAAGTAGAAGGTAACGGC
GACTGGTTGCACAACGTGGCGCTTACTGCGGGAGGCGCATGGCTCGGAGA
AGAAGATCTCGATAATAAAAATGGTGGACGGGCAAATGTTGACGTCATCG
TCATTGCCGCCGCGTGGCTCGGTATGTTCGTGCTTTCGCCGATGCAGCAC
TTCCTCATGTTTTACGGGTTCTGGCACTGCGTTTGTCTGGGCTCTGCTGA
GGTTTGGGGCTACCCGGATCGCAACATCTACGGCCCTTGGTGGCTTGTTA
TGGACGACATCCGTGTTTATTTTCGCATGTGGTCAGCGCCCGTTTCTCAC
TGGCTGGCCGCCAGCGTGCAGCGGCCCATGCTCGAGGCCGGGCGGCAGGC
GGCAGGACGCCGTGCTAGCGTCGCAGGTGGAAGGAGAGTTCGTGGTAGTG
GTGGAAGCTGCGGTGGTGATGGCACCATCCTCTGGCGCTGGTGGTTCGCC
TCCGTCGTGTGCTCGTTTCTTGTGTCAGGGCTGCTCCATGAGGCTGTTGG
CTTCGTTGCTTTGCGGCAAACGGTATGGCCCTTTAATACGATGTTTCTTG
CAATGAGTGCCATAATAACTCCTTGGTGGGATTTGCTGTTCCCCGCCGTG
CGCGCCCGATCCGCCAGCGAATCTACCCCGAATTCCAAACCGTCTTCTAA
GACTTCCGTGCAGGAAACCCCCGCGGAACCAGATAAAGACGGATCCCAAA
ATAGCGCTCGAAATGCCGACAAGGCCGTAAACAAAGGCCAGCCGCATATT
CACCTCTTTTCGGCCACTAGAGAAGCCCCTCGCGGTACGCCTGGTGCACC
GCCAGGACGATTGTGCTCCACGGGGGCTGGAGAAACGATTAGCGATGGTG
ACCTGGGCTCGGGGACCGCAATGTCTCGCCCGGCGATCGGGATCTACCGA
GGCTGGTTCGCGGTAGTCTTTTACTTTGCTGCATCTCTGCCGATGACCTT
AATGGTGGACTATCTCTTGTGGCAGTGGTGGCGACAAACCGTCATGGTAC
GTTAGGCCCTTGGTGGCTTGTTATGGACGACATCCGTGTTTATTTTCGCA
TGTGGTCAGCGCCCGTTTCTCACTGGCTGGCCGCCAGCGTGCAGCGGCCC
ATGCTCGAGGCCGGGCGGCAGGCGGCAGGACGCCGTGCTAGCGTCGCAGG
TGGAAGGAGAGTTCGTGGTAGTGGTGGAAGCTGCGGTGGTGATGGCACCA
TCCTCTGGCGCTGGTGGTTCGCCTCCGTCGTGTGCTCGTTTCTTGTGTCA
GGGCTGCTCCATGAGGCTGTTGGCTTCGTTGCTTTGCGGCAAACGGTATG
GCCCTTTAATACGATGTTTCTTGCAATGAGTGCCATAATAACTCCTTGGT
GGGATTTGCTGTTCCCCGCCGTGCGCGCCCGATCCGCCAGCGAATCTACC
CCGAATTCCAAACCGTCTTCTAAGACTTCCGTGCAGGAAACCCCCGCGGA
ACCAGATAAAGACGGATCCCAAAATAGCGCTCGAAATGCCGACAAGGCCG
TAAACAAAGGCCAGCCGCATATTCACCTCTTTTCGGCCACTAGAGAAGCC
CCTCGCGGTACGCCTGGTGCACCGCCAGGACGATTGTGCTCCACGGGGGC
TGGAGAAACGATTAGCGATGGTGACCTGGGCTCGGGGACCGCAATGTCTC
GCCCGGCGATCGGGATCTACCGAGGCTGGTTCGCGGTAGTCTTTTACTTT
GCTGCATCTCTGCCGATGACCTTAATGGTGGACTATCTCTTGTGGCAGTG
GTGGCGACAAACCGTCATGGTACGTTAG
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