mRNA_H-elongata_contig160321.3873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig160321.3873.1
Unique NamemRNA_H-elongata_contig160321.3873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 182 bits (463), Expect = 1.460e-47
Identity = 97/260 (37.31%), Postives = 146/260 (56.15%), Query Frame = 1
Query:   73 GPEPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYIHTM 852
            G EP ++ EAQAS EWP+W++A+  E D     G W++ +  K +  +G + VF+RK NK+G++ KYK RLV QG+ Q+ G+ + E+  P     SIR +L +     WE  Q+DV  AYL  D++EEIY+  PE + D   ++  L+K +YGL  +G  W +K   EL   G++  +ADPCV+        V       DDLL+ + + +  E+  RDL   F + DLGE    +G  I  DR AG + + Q  YI ++
Sbjct:  904 GDEPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESI 1163          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A401H727_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H727_9APHY)

HSP 1 Score: 173 bits (439), Expect = 1.990e-44
Identity = 93/256 (36.33%), Postives = 142/256 (55.47%), Query Frame = 1
Query:   85 ITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYIHTM 852
            + + +AQAS EW +W++A+  E D     G W++ +  K +  +G + VF+RK NK+ ++ KYK RLV QG+ Q+ G+ + E+  P     SIR +L +     WE  Q+DV  AYL  D++EEIY+  PE + D   ++  L+K +YGL  +G  W +K   EL   G++  +ADPCV+        V       DDLL+ + + +  E+  RDL   F + DLGE    +G  I  DR AGTL + Q  YI ++
Sbjct:  713 VLLTKAQASPEWSEWEKAVKAEYDQLQGMGTWELQDLPKYRNAVGCKWVFQRKTNKESQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGCKWNRKLHRELMELGYKRLEADPCVYLWERKEGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGTLQISQQHYIESI 968          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 172 bits (436), Expect = 5.570e-44
Identity = 93/267 (34.83%), Postives = 148/267 (55.43%), Query Frame = 1
Query:   61 ARQLGPE-PITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYIHTMAE 858
            A ++GP+ P T+ +A+ S EW  W+ A+  E    +  G W++ E  + + ++G+R VF +K ++ GK+ +YK RLV QGF Q+ G+ Y ++  P     ++R  + + A   WE RQ+D+  AYL  ++EEEI++E PE + D   +V  LK  +YGL  AG +W KK   +L   GF  + ADPCV+     G +        DD+++   ++   +  V  L   F +KDLGE    LG  I  +R   T+T+ Q  YI+T+ E
Sbjct:  847 AGEIGPDVPKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWV-DDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILE 1112          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 172 bits (435), Expect = 7.590e-44
Identity = 96/254 (37.80%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   82 PITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYI 843
            P ++ EA+AS EW +WK+A+  EM      G +   +   G+  +G + VF +K ++DG I +YK RLV QG+ Q+ G+ Y E+  P     S+R  L + A    E  Q+DV  AYL  ++EEEIY+  PE Y D   +V  L+K +YGL  +G  W ++F  +L + GF   +AD CV++RI  G +        DDLL+ S T  D  +   +L + F +KDLGE    +G  I  DR  GT+++ Q QYI
Sbjct:  879 PRSVAEAEASPEWAEWKKAMDEEMSVIKEMGTYTKEDLPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTIITVWV-DDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYI 1131          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 168 bits (425), Expect = 2.300e-43
Identity = 104/280 (37.14%), Postives = 154/280 (55.00%), Query Frame = 1
Query:   13 SVKTLPPLIRVPTCGSARQLGPEPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYI 843
            S+  +P L+  P     RQ   +P ++ EA  S+EWP+WK AI +EM    + G + +VE  K   ++G++ VF+ K N + +IE YK RLV QGF QV GI + E+  P +  ASI ++L + A   WE  Q+DV  AYL  D+EEEIY++ P    +  K+  V  LK+ +YGL  +G  + KK   EL + G   S+ D CVF  R    +++       DD  +A  TK       R++ + F + DLGE  + LG  +  DR+  TL++ QH YI
Sbjct:   97 SIFAMPALMETP-----RQ---DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYI 367          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 170 bits (431), Expect = 2.590e-43
Identity = 100/258 (38.76%), Postives = 146/258 (56.59%), Query Frame = 1
Query:   79 EPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYI 843
            +P ++ EA  S+EWP+WK AI +EM    + G + +VE  K   ++G++ VF+ K N +G+IE YK RLV QGF QV GI + E+  P +  ASIR++L + A   WE  Q+DV  AYL  D+EEEIY+  P    +  K+  V  LK+ +YGL  +G  + KK   EL + G   S+ D CVF  R    +++       DD  +A  TK       R++ + F + DLGE  + LG  +  DR+A TL++ Q  YI
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVFWLRNEEDVLILLIALSVDDSTIAG-TKAAVFWFKREISTRFEMSDLGEMHWILGIEVRRDRDARTLSLSQRAYI 1177          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT)

HSP 1 Score: 159 bits (402), Expect = 4.950e-42
Identity = 100/266 (37.59%), Postives = 145/266 (54.51%), Query Frame = 1
Query:   79 EPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDS--RKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYIHTMAELLA 867
            EP T  EA  SSE PQWK AI  E++  +    W++V+   G   LG R +FKRK+  DG I+KYK RLVV+G+RQ +G+ Y ++  P +   SIRMVL + A    +  Q+DV  A+L  ++EEEIY+E PE +  S    +V  L K++YGL  A   W +KF   +   GF+I++ D CV+ +   HG V+       DD+L+  +  +        L S F +KD+G A   LG  IT  R    L + Q  Y+  + E  +
Sbjct:   29 EPKTYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQWHQKFDQAMMESGFKINECDKCVYVKNTTHGYVILCLYV--DDMLIIGSNDKMIRSTKDMLKSKFDMKDMGLADVILGVKIT--RTQDGLILSQTHYVDKILEKFS 290          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 166 bits (419), Expect = 1.020e-41
Identity = 101/279 (36.20%), Postives = 153/279 (54.84%), Query Frame = 1
Query:   79 EPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRIL--HGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYI------HTMAELLA*RRPASSR 891
            +P++  +A +  +  +W++A   E++     GV++ V R + + ++G++ VFK K   DG++EKYK RLV QGF QV+GI Y E+  P +   SIR++L + A   WE  Q+DV  A+L  ++EEEIY+++P  ++ S   V  LKKA+YGL  A   W KK   EL+  GF   QAD CVF + +  H  ++       DD +V S +     +   DL S F + DLGE  + L   +T +R   T+ + Q QYI      H MAE      P  S+
Sbjct:  994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYV---DDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAECKPVHTPMDSK 1269          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 164 bits (414), Expect = 1.210e-41
Identity = 95/262 (36.26%), Postives = 147/262 (56.11%), Query Frame = 1
Query:   79 EPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYIHTMAE 858
            +P T  +A    +  +W  A+  E D     GVW++V+R +G  V+G + +FKRK +  GK+EK+K RLV +G+ Q  G+ +EE+  P     SIR +L+++A   +E  Q+DV  A+L  D+EE++Y+E PE +  +    +V  L+K++YGL  A   W  KF   +   GF  + ++PCV+ R +H  VV       DD+L+A       ++  + L   F +KDLGEASY LG  I  DR    L++ Q  YI T+ E
Sbjct:  330 DPSTYSQAIKDFDSKKWISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTLYV-DDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLE 590          
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 164 bits (416), Expect = 2.580e-41
Identity = 108/283 (38.16%), Postives = 150/283 (53.00%), Query Frame = 1
Query:   79 EPITMGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKRKINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAALGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQISQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITWDRNAGTLTVDQHQYI------HTMAELLA*RRPASSRPWQEEK 909
            EP T  EA +  +  +WK A   E+   V   ++  VER + + V+  + VFK K   DG+IEKYK RLV +GF QV+G+ + E+  P +  AS+R +L + A L  E  Q+DV  A+L  D++EEIY+++P  +  S   V  L KA+YGL  AG  W KK   E EA GF    +D  VF +   GI++       DD+L+ S           DL S F + DLGEA + LG  IT DR    L + QHQY+      H MA+     RP S+   Q +K
Sbjct:  925 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGFTRCHSDHSVFYKNDDGILLIIAIYV-DDMLILSDNLTAVTTLKEDLKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQHGMADC----RPVSTPMAQNQK 1202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160321.3873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401GYH9_9APHY1.460e-4737.31Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A401H727_9APHY1.990e-4436.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A0C3AKI0_9AGAM5.570e-4434.83Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A284QR88_ARMOS7.590e-4437.80Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GP19_9APHY2.300e-4337.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GN13_9APHY2.590e-4338.76Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A5R9QKQ6_9BACT4.950e-4237.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK1.020e-4136.20Integrase catalytic domain-containing protein (Fra... [more]
A0A2N9IT45_FAGSY1.210e-4136.26Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A401G4V0_9APHY2.580e-4138.16Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160321contigH-elongata_contig160321:415..1469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score115.2
Seed ortholog evalue2.8e-23
Seed eggNOG ortholog3711.Bra008641.1-P
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1055
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160321.3873.1prot_H-elongata_contig160321.3873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig160321 505..972 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.5806203-UTR-H-elongata_contig160321:414..5041622929941.5806203-UTR-H-elongata_contig160321:414..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160321 415..504 +
1691679216.741932-UTR-H-elongata_contig160321:414..5041691679216.741932-UTR-H-elongata_contig160321:414..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160321 415..504 +
1622929941.6099975-UTR-H-elongata_contig160321:972..14691622929941.6099975-UTR-H-elongata_contig160321:972..1469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160321 973..1469 +
1691679216.7622828-UTR-H-elongata_contig160321:972..14691691679216.7622828-UTR-H-elongata_contig160321:972..1469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig160321 973..1469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929941.5959036-CDS-H-elongata_contig160321:504..9721622929941.5959036-CDS-H-elongata_contig160321:504..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160321 505..972 +
1691679216.754127-CDS-H-elongata_contig160321:504..9721691679216.754127-CDS-H-elongata_contig160321:504..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig160321 505..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig160321.3873.1

>prot_H-elongata_contig160321.3873.1 ID=prot_H-elongata_contig160321.3873.1|Name=mRNA_H-elongata_contig160321.3873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSEWPQWKRAITREMDGQVARGVWQVVERLKGKTVLGTRVVFKR
KINKDGKIEKYKCRLVVQGFRQVKGIHYEESSFPTSAQASIRMVLNMIAA
LGWEARQLDVDMAYLEADVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVH
AGLLW*
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mRNA from alignment at H-elongata_contig160321:415..1469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig160321.3873.1 ID=mRNA_H-elongata_contig160321.3873.1|Name=mRNA_H-elongata_contig160321.3873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig160321:415..1469+ (Himanthalia elongata Himel1 dioecious)
CGGGCGGGATATAGCGTCAAGACACTGCCACCCCTGATACGTGTTCCGAC ATGCGGGTCCGCGAGGCAGCTAGGTCCAGAGCCGATAACCATGGGCGAGG CGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGATCACGCGCGAG ATGGATGGGCAAGTTGCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCTAAA AGGGAAGACGGTGCTGGGCACGAGAGTAGTTTTCAAGCGAAAAATCAACA AGGATGGAAAGATCGAGAAGTATAAATGTCGTCTCGTGGTGCAGGGTTTC AGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTTTCCGACTTCTGC GCAGGCCAGCATTAGGATGGTACTCAACATGATCGCGGCTCTCGGCTGGG AGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGCCGATGTGGAG GAGGAAATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCA AGTCGGCCTACTAAAGAAGGCAATGTACGGGCTCGTCCACGCCGGGCTGC TGTGGTAAAAAAAGTTCGGGATCGAGCTCGAGGCGAAGGGTTTTCAGATA TCTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCACGGGATAGTGGT AGTCGTGATTGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGA AACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATC AAGGATCTGGGGGAGGCTTCGTATTACCTGGGATGCCACATCACGTGGGA CCGGAACGCCGGGACACTGACGGTTGACCAGCATCAGTACATACATACTA TGGCGGAACTTTTGGCCTGACGAAGACCAGCATCCTCCCGTCCGTGGCAG GAGGAAAAGCCCTTTCGAAATCAGACAGCCCGTAAACGGACGCAGAGGTT GAAGAAATCCGCCAGATTCCCTACCGAGAAATCGTTGGGGCTCTAATGTG GGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACTGG CGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig160321:415..1469+

>mRNA_H-elongata_contig160321.3873.1 ID=mRNA_H-elongata_contig160321.3873.1|Name=mRNA_H-elongata_contig160321.3873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig160321:415..1469+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
CACGCGCGAGATGGATGGGCAAGTTGCTCGAGGCGTGTGGCAGGTGGTGG
AGCGCCTAAAAGGGAAGACGGTGCTGGGCACGAGAGTAGTTTTCAAGCGA
AAAATCAACAAGGATGGAAAGATCGAGAAGTATAAATGTCGTCTCGTGGT
GCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTTTC
CGACTTCTGCGCAGGCCAGCATTAGGATGGTACTCAACATGATCGCGGCT
CTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGGC
CGATGTGGAGGAGGAAATCTACGTTGAGCTCCCGGAGGCATACCGTGACT
CCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGGCTCGTCCAC
GCCGGGCTGCTGTGGTAAATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCC
GCAATGGAAAAGGGCGATCACGCGCGAGATGGATGGGCAAGTTGCTCGAG
GCGTGTGGCAGGTGGTGGAGCGCCTAAAAGGGAAGACGGTGCTGGGCACG
AGAGTAGTTTTCAAGCGAAAAATCAACAAGGATGGAAAGATCGAGAAGTA
TAAATGTCGTCTCGTGGTGCAGGGTTTCAGGCAGGTCAAAGGCATACACT
ACGAGGAATCCTCCTTTCCGACTTCTGCGCAGGCCAGCATTAGGATGGTA
CTCAACATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGA
CATGGCCTACCTGGAGGCCGATGTGGAGGAGGAAATCTACGTTGAGCTCC
CGGAGGCATACCGTGACTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCA
ATGTACGGGCTCGTCCACGCCGGGCTGCTGTGGTAA
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