mRNA_H-elongata_contig16001.3859.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI) HSP 1 Score: 101 bits (251), Expect = 7.190e-23 Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 1 GLVPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVV-FHLGEPSDVVCAARPWVLHVGLTFT 261
G +P+ S L ++ + FAG+YA + WI + R VIVKLSQPFVCQLFL+GC+LLN+ F +G SD C +PW+LH+GLTFT
Sbjct: 336 GYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRERWAVIVKLSQPFVCQLFLAGCILLNITAAFLVGVASDPSCVMQPWMLHIGLTFT 423
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A7S2XWQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ9_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.140e-15 Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHL-GEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRV 303
+P S++ M A S + + WI +HR +VK+SQP C LF G ++ N+ + L G+PSD +C RPW+ H+ +TFT SCL +K + V R+
Sbjct: 112 LPRESTVGWTMTAFSTIGTVICLFWLVWIYEHRAFSVVKMSQPLFCGLFALGGLVCNLSLLALLGKPSDALCRIRPWLQHLPITFTYSCLLVKIFHVWRI 211
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WRC7_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRC7_CAPO3) HSP 1 Score: 69.7 bits (169), Expect = 1.850e-11 Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1
Query: 52 IFAGIYATLYFGWI---MQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHLGE-PSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKD 345
+ A I+ + FG++ M++ + I+ S P L L G +L V +F P+D +CAA PWV H+G F L+LKTYR+ R+FN+ A + RI +KD
Sbjct: 1234 VLAAIFILIAFGFLLFLMRNWSSRIIVASSPTFLALILFGALLSYVWIFLAAPTPTDALCAAMPWVRHLGFCFVFGALFLKTYRIDRIFNNDA-IKRIRMKD 1334
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.860e-9 Identity = 38/114 (33.33%), Postives = 54/114 (47.37%), Query Frame = 1
Query: 7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVVVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKDR 348
+P++S + A + F +YA + +I P C +FL GC L D VC ARPW+ HV LTFT SC+ +K +R R+F+ L RI I +R
Sbjct: 894 IPLASRAGAGLTALAAFTALYAGGFAAFI-------------PLFCGMFLGGCAAL--------AGRDAVCMARPWLQHVLLTFTLSCILVKLHRAWRLFSFKNGLKRIKISNR 986
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0G4J476_PLABS (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J476_PLABS) HSP 1 Score: 55.8 bits (133), Expect = 1.280e-6 Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 91 IMQHRQTVIVKLSQPFVCQLFLSGCVLLNV--VVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVA 318
I++HRQ+ +K P + L L+G VLL+ + F SD++C R W+ +G T + L++KTYR+ R+FNS++
Sbjct: 556 IVRHRQSTRIKAFSPPLLLLSLAGAVLLSSASLTFAFLPASDLLCQWRWWMTALGFIVTFAPLFIKTYRINRIFNSLS 633
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WJ31_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJ31_CAPO3) HSP 1 Score: 55.1 bits (131), Expect = 2.080e-6 Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 103 RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISIKDR 348
R+ I++ + P +L L G V+ + +F + +PS C AR W+ H+G + L+LKTYR+ RVF V + DR
Sbjct: 14 RRVRIIQSASPVYLELILLGAVMSMLWIFLDYSDDPSSSQCTARVWMRHLGFGVMFAALFLKTYRIARVFQQVTVSRSTPLSDR 97
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A6V1PF52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF52_HETAK) HSP 1 Score: 54.3 bits (129), Expect = 4.430e-6 Identity = 32/112 (28.57%), Postives = 52/112 (46.43%), Query Frame = 1
Query: 7 VPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNVV-VFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISI 339
VP +S+ + + A + G ++ R+T +K SQP +F+ V + V LG P+ C R W+ H+ T L+LK YRV R+F + L R+ +
Sbjct: 523 VPFASATGRAVCAVCTLGAGVGLVLLGAVVALRRTPDIKASQPVFLGIFVGAAVAVTASNVLGLGPPTAATCLGRAWLFHLAFTAMFGALFLKAYRVWRIFGN-KNLRRVKV 633
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2X112_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=4 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X112_CAPO3) HSP 1 Score: 53.5 bits (127), Expect = 8.190e-6 Identity = 34/113 (30.09%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 4 LVPVSSSLEKWMIASSIFAGIYATL--YFGWIMQH-RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLS 327
L+ +S+ +A + AG+ L G + H R+ I++ + P L L G V+ + +F + +PS C AR W+ H+G + + L+LKTYR+ RVF + S
Sbjct: 416 LITPASTSSAARVALFVLAGLIVLLCMIMGLMTWHFRRIRIIQSASPTYLLLILFGAVMSMLWIFLDYSDDPSTAQCTARVWMRHLGFSIMFTALFLKTYRIARVFKATVTKS 528
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: A0A0D2WRZ4_CAPO3 (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WRZ4_CAPO3) HSP 1 Score: 52.8 bits (125), Expect = 1.520e-5 Identity = 27/77 (35.06%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 103 RQTVIVKLSQPFVCQLFLSGCVLLNVVVF--HLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLS 327
R+ I++ + P L L G V+ + +F + +PS C AR W+ H+G + S L+LKTYR+ RVF + S
Sbjct: 436 RRIRIIQSASPTYLLLILFGAVMSMLWIFLDYSDDPSTAQCTARVWMRHLGFSIMFSALFLKTYRIARVFKATVTKS 512
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Match: K3X561_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X561_GLOUD) HSP 1 Score: 51.6 bits (122), Expect = 3.910e-5 Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 40 IASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLFLSGCVLLNV-VVFHLGEPSDVVCAARPWVLHVGLTFTCSCLYLKTYRVQRVFNSVAKLSRISI 339
I S + G+ L ++ R+ I+K SQ + +L + G +L+ + V + GEP++V+CAARP ++ G T L++K+ RV RVF + + R+ I
Sbjct: 586 ITSGVLIGVLV-LAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMK-SSMKRVKI 684 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16001.3859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16001.3859.1 >prot_H-elongata_contig16001.3859.1 ID=prot_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp GLVPVSSSLEKWMIASSIFAGIYATLYFGWIMQHRQTVIVKLSQPFVCQLback to top mRNA from alignment at H-elongata_contig16001:5447..6783- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16001.3859.1 ID=mRNA_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-elongata_contig16001:5447..6783- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16001:5447..6783- >mRNA_H-elongata_contig16001.3859.1 ID=mRNA_H-elongata_contig16001.3859.1|Name=mRNA_H-elongata_contig16001.3859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig16001:5447..6783- (Himanthalia elongata Himel1 dioecious)back to top |