mRNA_H-elongata_contig159800.3852.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159800.3852.1
Unique NamemRNA_H-elongata_contig159800.3852.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159800.3852.1 vs. uniprot
Match: A0A6H5KA25_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA25_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.640e-27
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 QTLTFGDYRRATLVEWGSIWLASLGVVGWNATLAFRHARRVWYKIAVAIVAPCLALLVKSVASYLYKEIVLQPELGSPESLALPRSRFKYVSGLKV 288
            +TLTFGDYRR +L+E   + LA++G VGW     FR +RR W K+AVAIVAP +A +V+SV  YLY+EIVLQP+L SPES+A P SRF+ V GLKV
Sbjct:   93 ETLTFGDYRRPSLLESCVLALAAVGPVGWKTLSTFRKSRRTWAKVAVAIVAPAVAWVVRSVLGYLYREIVLQPKLRSPESVAFPNSRFEDVGGLKV 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159800.3852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA25_9PHAE4.640e-2760.42Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159800contigH-elongata_contig159800:13..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929939.4440029-CDS-H-elongata_contig159800:12..1001622929939.4440029-CDS-H-elongata_contig159800:12..100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159800 13..100 -
1691679215.8721628-CDS-H-elongata_contig159800:12..1001691679215.8721628-CDS-H-elongata_contig159800:12..100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159800 13..100 -
1622929939.464296-CDS-H-elongata_contig159800:642..8421622929939.464296-CDS-H-elongata_contig159800:642..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159800 643..842 -
1691679215.8818142-CDS-H-elongata_contig159800:642..8421691679215.8818142-CDS-H-elongata_contig159800:642..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159800 643..842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159800.3852.1prot_H-elongata_contig159800.3852.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159800 13..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159800.3852.1

>prot_H-elongata_contig159800.3852.1 ID=prot_H-elongata_contig159800.3852.1|Name=mRNA_H-elongata_contig159800.3852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QTLTFGDYRRATLVEWGSIWLASLGVVGWNATLAFRHARRVWYKIAVAIV
APCLALLVKSVASYLYKEIVLQPELGSPESLALPRSRFKYVSGLKV
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mRNA from alignment at H-elongata_contig159800:13..842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159800.3852.1 ID=mRNA_H-elongata_contig159800.3852.1|Name=mRNA_H-elongata_contig159800.3852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig159800:13..842- (Himanthalia elongata Himel1 dioecious)
CAGACACTCACGTTTGGTGATTACCGTCGCGCAACGCTCGTGGAATGGGG
CTCGATCTGGCTTGCGTCATTAGGCGTCGTCGGATGGAATGCGACGCTGG
CGTTTCGTCACGCCCGACGGGTATGGTACAAGATCGCCGTTGCGATTGTG
GCTCCGTGCTTGGCTTTGCTCGTGAAGTCTGTCGCTTCATACCTGTACAA
GTGAGTCATCCCGTACTCAATCCTGCCATCAAAGTAATCATTGAGGAATC
TTGCGCGTGCGTGCGTGCGTGTATTCATAGCCGCGTAATCTGGCACCTGT
CATGCCAATTATTCTCAGCCCTGTCATAGCCGCATTGATCCTACCACTGG
AGAAGAGGGGAAGATGTGCTCCTTTGAGGTAGCGGCGGGTCATTAAAGTT
CCTGTACACGCCGCGCAAATATCGACGTTTGATAGCGCTCAGAGGTTTTT
GACTTCTGAATCGTATCGGTGAACACAAGACAAAACGAAATGACGTGTGT
GCATCCCGCGTTCGCGGACGAGTGAACTCTGCGCCACAGACGTATCGCAT
CGTTCCAGGTGAAAAGTAGACTACTGCTACTGCTACTGCGTTGTTGAATT
TCGATACTAGCGTGGGTGGAAGGCCACTGTTGCGAAGTATTGCAGGGTAT
TTATTTCTGAGTGGGCAAGTAAGGCAGATTACACCGTAAGGCTCCGTAGC
TCATACTCACCTGATTCGCGTGTGGATCGTTTCTGTTCGAAGGGAAATCG
TGCTGCAACCCGAGCTAGGATCGCCGGAGAGTCTGGCGCTCCCCAGAAGC
CGCTTCAAATATGTCAGCGGTCTGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig159800:13..842-

>mRNA_H-elongata_contig159800.3852.1 ID=mRNA_H-elongata_contig159800.3852.1|Name=mRNA_H-elongata_contig159800.3852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig159800:13..842- (Himanthalia elongata Himel1 dioecious)
CAGACACTCACGTTTGGTGATTACCGTCGCGCAACGCTCGTGGAATGGGG
CTCGATCTGGCTTGCGTCATTAGGCGTCGTCGGATGGAATGCGACGCTGG
CGTTTCGTCACGCCCGACGGGTATGGTACAAGATCGCCGTTGCGATTGTG
GCTCCGTGCTTGGCTTTGCTCGTGAAGTCTGTCGCTTCATACCTGTACAA
CAGACACTCACGTTTGGTGATTACCGTCGCGCAACGCTCGTGGAATGGGG
CTCGATCTGGCTTGCGTCATTAGGCGTCGTCGGATGGAATGCGACGCTGG
CGTTTCGTCACGCCCGACGGGTATGGTACAAGATCGCCGTTGCGATTGTG
GCTCCGTGCTTGGCTTTGCTCGTGAAGTCTGTCGCTTCATACCTGTACAA
GGAAATCGTGCTGCAACCCGAGCTAGGATCGCCGGAGAGTCTGGCGCTCC
CCAGAAGCCGCTTCAAATATGTCAGCGGTCTGAAGGTGGGAAATCGTGCT
GCAACCCGAGCTAGGATCGCCGGAGAGTCTGGCGCTCCCCAGAAGCCGCT
TCAAATATGTCAGCGGTCTGAAGGTG
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