mRNA_H-elongata_contig159389.3829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159389.3829.1
Unique NamemRNA_H-elongata_contig159389.3829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.650e-48
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            VYPK  DLNASVEDPRIMGVIREQGGKMYM+M NWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKV
Sbjct:  129 VYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKV 213
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.190e-47
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            VYPK  DLNASVEDPRIMGVIREQGGKMYM+M NWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKV
Sbjct:  221 VYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKV 305
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S1XNF2_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNF2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.280e-37
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            +YPK   L+A+V DPRIMG+IRE+GGKM+M +  WG+AYNEFY  FRNYQE GNP AK CLKYVVL+NML LSDINPFAAREAKV
Sbjct:  223 IYPKTEALSAAVADPRIMGIIREEGGKMFMGLSQWGEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKV 307
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7R9YB37_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB37_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.700e-37
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            +YPK   LNA+V DPRIMG+IRE+GGKM+M + +W +AYNEFY  FRNYQE GNP AK CLKYVVL+NML LSDINPFAAREAKV
Sbjct:  216 IYPKTEALNAAVADPRIMGIIREEGGKMFMGLGSWSEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKV 300
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK)

HSP 1 Score: 137 bits (345), Expect = 8.450e-37
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            VYPK  +LNA+V DPRIMGVIRE+GGKM+MA   W +AYNEFYEGFR++QEAGN  A+ CLKYVVLANML LSDINPFAAREAKV
Sbjct:  220 VYPKTLNLNAAVADPRIMGVIREEGGKMHMAAGRWAEAYNEFYEGFRSHQEAGNARARDCLKYVVLANMLALSDINPFAAREAKV 304
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.050e-36
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREA 249
            +YPK  +LNA+V DPRIMGVIRE+GGKMYMA   W +AYNEFYEGFR YQEAGNP AK  LKYVVLANML LSDINPFAAREA
Sbjct:  267 LYPKTLNLNAAVADPRIMGVIREEGGKMYMAEGRWNEAYNEFYEGFRGYQEAGNPRAKDALKYVVLANMLALSDINPFAAREA 349
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.740e-34
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREA 249
            +YPK  +LNA+V DPRIMGVIRE+GGKMYM+   W  AYNEFYEGFR +QEAGNP AK  LKYVVLANML LS+INPF+AREA
Sbjct:  245 IYPKTLNLNAAVADPRIMGVIREEGGKMYMSESRWDDAYNEFYEGFRGFQEAGNPRAKDALKYVVLANMLALSEINPFSAREA 327
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: W4HBH4_9STRA (COP9 signalosome complex subunit 2 n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBH4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.880e-34
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            +YPK  DL+A++ DPR MGVIRE+GGKMYMA   W  AYNEF+E FRNYQEAGN  AK CLKYVVLANML  SDINPF +REAKV
Sbjct:  227 IYPKTLDLDAAISDPRTMGVIREEGGKMYMAEGQWHLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKV 311
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A0P1B763_PLAHL (COP9 signalosome complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B763_PLAHL)

HSP 1 Score: 129 bits (323), Expect = 1.750e-33
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            +YPK  DL+ +V DPRIMG+IRE+GGKMYM ME W  AYNEF+E FRNYQEAGN  A  CLKYVVLANML  S+INPF +REAKV
Sbjct:  240 IYPKTLDLDGAVADPRIMGIIREEGGKMYMEMEEWMLAYNEFFESFRNYQEAGNSRATQCLKYVVLANMLASSNINPFDSREAKV 324
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BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A1V9Z146_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z146_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.160e-33
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 255
            +YPK   L+A++ DPRIMGVIRE+GGKMYM+   W +AYNEF+E FRNYQEAGN  AK CLKYVVLANML  SDINPF +REAKV
Sbjct:  227 LYPKTLGLDAAISDPRIMGVIREEGGKMYMSEGLWSEAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKV 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR5_ECTSI1.650e-4894.12COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6H5JKQ1_9PHAE1.190e-4794.12COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A7S1XNF2_9STRA3.280e-3774.12COP9 signalosome complex subunit 2 n=2 Tax=Phaeomo... [more]
A0A7R9YB37_9STRA5.700e-3774.12COP9 signalosome complex subunit 2 n=1 Tax=Pinguio... [more]
A0A6V1ITC2_HETAK8.450e-3777.65COP9 signalosome complex subunit 2 n=1 Tax=Heteros... [more]
A0A7S2W4K8_9STRA3.050e-3679.52COP9 signalosome complex subunit 2 n=2 Tax=Rhizoch... [more]
A0A7S2BKS2_9STRA1.740e-3474.70COP9 signalosome complex subunit 2 n=1 Tax=Dictyoc... [more]
W4HBH4_9STRA5.880e-3472.94COP9 signalosome complex subunit 2 n=5 Tax=Aphanom... [more]
A0A0P1B763_PLAHL1.750e-3371.76COP9 signalosome complex subunit 2 n=1 Tax=Plasmop... [more]
A0A1V9Z146_9STRA2.160e-3371.76COP9 signalosome complex subunit 2 n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159389contigH-elongata_contig159389:294..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D7FRR5
Preferred nameCOPS2
KEGG koko:K12176
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size258
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159389.3829.1prot_H-elongata_contig159389.3829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159389 294..1195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.3708308-CDS-H-elongata_contig159389:293..3771622929937.3708308-CDS-H-elongata_contig159389:293..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 294..377 -
1691679215.011096-CDS-H-elongata_contig159389:293..3771691679215.011096-CDS-H-elongata_contig159389:293..377Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 294..377 -
1622929937.3846922-CDS-H-elongata_contig159389:843..9361622929937.3846922-CDS-H-elongata_contig159389:843..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 844..936 -
1691679215.020635-CDS-H-elongata_contig159389:843..9361691679215.020635-CDS-H-elongata_contig159389:843..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 844..936 -
1622929937.3949602-CDS-H-elongata_contig159389:1114..11951622929937.3949602-CDS-H-elongata_contig159389:1114..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 1115..1195 -
1691679215.0277457-CDS-H-elongata_contig159389:1114..11951691679215.0277457-CDS-H-elongata_contig159389:1114..1195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159389 1115..1195 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159389.3829.1

>prot_H-elongata_contig159389.3829.1 ID=prot_H-elongata_contig159389.3829.1|Name=mRNA_H-elongata_contig159389.3829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQ
EAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV*
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mRNA from alignment at H-elongata_contig159389:294..1195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159389.3829.1 ID=mRNA_H-elongata_contig159389.3829.1|Name=mRNA_H-elongata_contig159389.3829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=902bp|location=Sequence derived from alignment at H-elongata_contig159389:294..1195- (Himanthalia elongata Himel1 dioecious)
GTGTACCCGAAAATCACGGACCTCAACGCTTCCGTAGAAGACCCGCGTAT
CATGGGTGTCATCCGAGAACAAGGGGGAAAGGTGAAATAGAGTAATGTAG
ATATTTGAAGGAAAGTTGAGCACTGAGACGTCGGGAACCCGAGGAGTCTT
GTAGGCCCGGGATCTAGAATGGTTAGAAGATGCTCACGTTCGTTTGTGTT
CCCATTGGATGCCATTGAAGCGACTATTCTTGATCTTCCGTGGTGAAACC
TTCCCCCAGATGTACATGGCCATGGAGAACTGGGGGCAGGCGTATAACGA
GTTTTACGAGGGGTTTCGCAACTACCAGGAGGCGGGGAACCCAAACGCGA
AGGTAGGCACCGCGCCCGAGCTGGCGCTCGTGTCGTTTTATCTCGTCATA
TCTTGTCCAGGCGAAAGCCGCCCGGGCCCCCATCTTAGGATATGTCGCCG
TTTTAACCCTCTCACGAGTGGACTTGGGATGTATATGTCCTACTTCGTTA
CGGGTTCAGGCTACATAGACTACTCATTATGACGGCTGTAGGGAGAATGA
GGCACAGACACGGCTGCACTGTAAGATGTGATTTTTTATCTACCTGTTGA
GGCCAGCGGCAACGACCACGATCATTCTACTCGCGGGTCAGTCCGATCGG
GGAACCCTTTCCTGGTGTAGTTTCGTCCGTTCTACTCGCGGACGAATTGG
CCGAAGTCGGACGATGGTTTTGGGTTTTCCCGTGGCTAGAAGAGATCCGG
TTCAGAGTTTAACGCTGACGCGCGCTGGATGGTTGTTTTTGGTGGCGGAG
CGGTCACCGCGACATCAGGTGTGCCTAAAGTACGTCGTGCTGGCCAACAT
GCTGGACCTGTCGGACATCAATCCCTTCGCCGCGCGAGAGGCAAAAGTGT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig159389:294..1195-

>mRNA_H-elongata_contig159389.3829.1 ID=mRNA_H-elongata_contig159389.3829.1|Name=mRNA_H-elongata_contig159389.3829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig159389:294..1195- (Himanthalia elongata Himel1 dioecious)
GTGTACCCGAAAATCACGGACCTCAACGCTTCCGTAGAAGACCCGCGTAT
CATGGGTGTCATCCGAGAACAAGGGGGAAAGGTGTACCCGAAAATCACGG
ACCTCAACGCTTCCGTAGAAGACCCGCGTATCATGGGTGTCATCCGAGAA
CAAGGGGGAAAGATGTACATGGCCATGGAGAACTGGGGGCAGGCGTATAA
CGAGTTTTACGAGGGGTTTCGCAACTACCAGGAGGCGGGGAACCCAAACG
CGAAGATGTACATGGCCATGGAGAACTGGGGGCAGGCGTATAACGAGTTT
TACGAGGGGTTTCGCAACTACCAGGAGGCGGGGAACCCAAACGCGAAGGT
GTGCCTAAAGTACGTCGTGCTGGCCAACATGCTGGACCTGTCGGACATCA
ATCCCTTCGCCGCGCGAGAGGCAAAAGTGTGAGTGTGCCTAAAGTACGTC
GTGCTGGCCAACATGCTGGACCTGTCGGACATCAATCCCTTCGCCGCGCG
AGAGGCAAAAGTGTGA
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