prot_H-elongata_contig159389.3829.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig159389.3829.1
Unique Nameprot_H-elongata_contig159389.3829.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.650e-48
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            VYPK  DLNASVEDPRIMGVIREQGGKMYM+M NWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKV
Sbjct:  129 VYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKV 213          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 1.190e-47
Identity = 80/85 (94.12%), Postives = 81/85 (95.29%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            VYPK  DLNASVEDPRIMGVIREQGGKMYM+M NWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKV
Sbjct:  221 VYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKV 305          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S1XNF2_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNF2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.280e-37
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            +YPK   L+A+V DPRIMG+IRE+GGKM+M +  WG+AYNEFY  FRNYQE GNP AK CLKYVVL+NML LSDINPFAAREAKV
Sbjct:  223 IYPKTEALSAAVADPRIMGIIREEGGKMFMGLSQWGEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKV 307          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7R9YB37_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB37_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.700e-37
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            +YPK   LNA+V DPRIMG+IRE+GGKM+M + +W +AYNEFY  FRNYQE GNP AK CLKYVVL+NML LSDINPFAAREAKV
Sbjct:  216 IYPKTEALNAAVADPRIMGIIREEGGKMFMGLGSWSEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKV 300          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK)

HSP 1 Score: 137 bits (345), Expect = 8.450e-37
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            VYPK  +LNA+V DPRIMGVIRE+GGKM+MA   W +AYNEFYEGFR++QEAGN  A+ CLKYVVLANML LSDINPFAAREAKV
Sbjct:  220 VYPKTLNLNAAVADPRIMGVIREEGGKMHMAAGRWAEAYNEFYEGFRSHQEAGNARARDCLKYVVLANMLALSDINPFAAREAKV 304          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA)

HSP 1 Score: 136 bits (343), Expect = 3.050e-36
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREA 83
            +YPK  +LNA+V DPRIMGVIRE+GGKMYMA   W +AYNEFYEGFR YQEAGNP AK  LKYVVLANML LSDINPFAAREA
Sbjct:  267 LYPKTLNLNAAVADPRIMGVIREEGGKMYMAEGRWNEAYNEFYEGFRGYQEAGNPRAKDALKYVVLANMLALSDINPFAAREA 349          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.740e-34
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREA 83
            +YPK  +LNA+V DPRIMGVIRE+GGKMYM+   W  AYNEFYEGFR +QEAGNP AK  LKYVVLANML LS+INPF+AREA
Sbjct:  245 IYPKTLNLNAAVADPRIMGVIREEGGKMYMSESRWDDAYNEFYEGFRGFQEAGNPRAKDALKYVVLANMLALSEINPFSAREA 327          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: W4HBH4_9STRA (COP9 signalosome complex subunit 2 n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HBH4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.880e-34
Identity = 62/85 (72.94%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            +YPK  DL+A++ DPR MGVIRE+GGKMYMA   W  AYNEF+E FRNYQEAGN  AK CLKYVVLANML  SDINPF +REAKV
Sbjct:  227 IYPKTLDLDAAISDPRTMGVIREEGGKMYMAEGQWHLAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKV 311          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A0P1B763_PLAHL (COP9 signalosome complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B763_PLAHL)

HSP 1 Score: 129 bits (323), Expect = 1.750e-33
Identity = 61/85 (71.76%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            +YPK  DL+ +V DPRIMG+IRE+GGKMYM ME W  AYNEF+E FRNYQEAGN  A  CLKYVVLANML  S+INPF +REAKV
Sbjct:  240 IYPKTLDLDGAVADPRIMGIIREEGGKMYMEMEEWMLAYNEFFESFRNYQEAGNSRATQCLKYVVLANMLASSNINPFDSREAKV 324          
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Match: A0A1V9Z146_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z146_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.160e-33
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 0
Query:    1 VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV 85
            +YPK   L+A++ DPRIMGVIRE+GGKMYM+   W +AYNEF+E FRNYQEAGN  AK CLKYVVLANML  SDINPF +REAKV
Sbjct:  227 LYPKTLGLDAAISDPRIMGVIREEGGKMYMSEGLWSEAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKV 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159389.3829.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR5_ECTSI1.650e-4894.12COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6H5JKQ1_9PHAE1.190e-4794.12COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A7S1XNF2_9STRA3.280e-3774.12COP9 signalosome complex subunit 2 n=2 Tax=Phaeomo... [more]
A0A7R9YB37_9STRA5.700e-3774.12COP9 signalosome complex subunit 2 n=1 Tax=Pinguio... [more]
A0A6V1ITC2_HETAK8.450e-3777.65COP9 signalosome complex subunit 2 n=1 Tax=Heteros... [more]
A0A7S2W4K8_9STRA3.050e-3679.52COP9 signalosome complex subunit 2 n=2 Tax=Rhizoch... [more]
A0A7S2BKS2_9STRA1.740e-3474.70COP9 signalosome complex subunit 2 n=1 Tax=Dictyoc... [more]
W4HBH4_9STRA5.880e-3472.94COP9 signalosome complex subunit 2 n=5 Tax=Aphanom... [more]
A0A0P1B763_PLAHL1.750e-3371.76COP9 signalosome complex subunit 2 n=1 Tax=Plasmop... [more]
A0A1V9Z146_9STRA2.160e-3371.76COP9 signalosome complex subunit 2 n=1 Tax=Achlya ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.570coord: 2..85
e-value: 2.9E-24
score: 88.0
NoneNo IPR availablePANTHERPTHR1067826S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2coord: 2..84
IPR037750COP9 signalosome complex subunit 2PANTHERPTHR10678:SF3COP9 SIGNALOSOME COMPLEX SUBUNIT 2coord: 2..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159389contigH-elongata_contig159389:294..1195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159389.3829.1mRNA_H-elongata_contig159389.3829.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig159389 294..1195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig159389.3829.1 ID=prot_H-elongata_contig159389.3829.1|Name=mRNA_H-elongata_contig159389.3829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
VYPKITDLNASVEDPRIMGVIREQGGKMYMAMENWGQAYNEFYEGFRNYQ
EAGNPNAKVCLKYVVLANMLDLSDINPFAAREAKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037750COPS2