prot_H-elongata_contig158447.3788.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158447.3788.1
Unique Nameprot_H-elongata_contig158447.3788.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
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BLAST of mRNA_H-elongata_contig158447.3788.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-18
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 0 
Query:   10 VPLEVTLDASAFSDSDRIVTVQWDCKGDGIFEAEGNWTAQISKTHVCTYDVDGAYQATVKATN 72
            +PL+VT+DAS  SD++ IV ++WDC+GDG+FEAE +WT   ++ H CTY VDG Y+ +V+ATN
Sbjct:  524 LPLDVTIDASGSSDAEGIVLLEWDCEGDGVFEAESDWTVASARNHTCTYTVDGTYEPSVRATN 586
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158447.3788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.340e-1855.56PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 2..72
e-value: 7.7E-9
score: 37.7
IPR035986PKD domain superfamilySUPERFAMILY49299PKD domaincoord: 3..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158447contigH-elongata_contig158447:425..640 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158447.3788.1mRNA_H-elongata_contig158447.3788.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158447 425..640 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158447.3788.1 ID=prot_H-elongata_contig158447.3788.1|Name=mRNA_H-elongata_contig158447.3788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
GQISPLSLQVPLEVTLDASAFSDSDRIVTVQWDCKGDGIFEAEGNWTAQI
SKTHVCTYDVDGAYQATVKATN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR035986PKD_dom_sf