mRNA_H-elongata_contig158447.3788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158447.3788.1
Unique NamemRNA_H-elongata_contig158447.3788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158447.3788.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-18
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   28 VPLEVTLDASAFSDSDRIVTVQWDCKGDGIFEAEGNWTAQISKTHVCTYDVDGAYQATVKATN 216
            +PL+VT+DAS  SD++ IV ++WDC+GDG+FEAE +WT   ++ H CTY VDG Y+ +V+ATN
Sbjct:  524 LPLDVTIDASGSSDAEGIVLLEWDCEGDGVFEAESDWTVASARNHTCTYTVDGTYEPSVRATN 586
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158447.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.340e-1855.56PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158447contigH-elongata_contig158447:425..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.8296473-CDS-H-elongata_contig158447:424..6401622929933.8296473-CDS-H-elongata_contig158447:424..640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158447 425..640 +
1691679213.5087705-CDS-H-elongata_contig158447:424..6401691679213.5087705-CDS-H-elongata_contig158447:424..640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158447 425..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158447.3788.1prot_H-elongata_contig158447.3788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158447 425..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158447.3788.1

>prot_H-elongata_contig158447.3788.1 ID=prot_H-elongata_contig158447.3788.1|Name=mRNA_H-elongata_contig158447.3788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
GQISPLSLQVPLEVTLDASAFSDSDRIVTVQWDCKGDGIFEAEGNWTAQI
SKTHVCTYDVDGAYQATVKATN
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mRNA from alignment at H-elongata_contig158447:425..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158447.3788.1 ID=mRNA_H-elongata_contig158447.3788.1|Name=mRNA_H-elongata_contig158447.3788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig158447:425..640+ (Himanthalia elongata Himel1 dioecious)
GGTCAAATATCCCCCCTTTCCTTACAGGTGCCGCTGGAAGTCACCCTGGA
CGCTTCGGCGTTCTCCGACTCAGACAGAATCGTGACGGTGCAGTGGGACT
GCAAAGGGGACGGCATCTTCGAGGCCGAGGGCAACTGGACCGCTCAGATC
TCCAAGACACATGTCTGCACGTACGACGTAGACGGAGCTTATCAGGCTAC
GGTTAAGGCCACCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig158447:425..640+

>mRNA_H-elongata_contig158447.3788.1 ID=mRNA_H-elongata_contig158447.3788.1|Name=mRNA_H-elongata_contig158447.3788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig158447:425..640+ (Himanthalia elongata Himel1 dioecious)
GGTCAAATATCCCCCCTTTCCTTACAGGTGCCGCTGGAAGTCACCCTGGA
CGCTTCGGCGTTCTCCGACTCAGACAGAATCGTGACGGTGCAGTGGGACT
GCAAAGGGGACGGCATCTTCGAGGCCGAGGGCAACTGGACCGCTCAGATC
TCCAAGACACATGTCTGCACGTACGACGTAGACGGAGCTTATCAGGCTAC
GGTTAAGGCCACCAACGGTCAAATATCCCCCCTTTCCTTACAGGTGCCGC
TGGAAGTCACCCTGGACGCTTCGGCGTTCTCCGACTCAGACAGAATCGTG
ACGGTGCAGTGGGACTGCAAAGGGGACGGCATCTTCGAGGCCGAGGGCAA
CTGGACCGCTCAGATCTCCAAGACACATGTCTGCACGTACGACGTAGACG
GAGCTTATCAGGCTACGGTTAAGGCCACCAAC
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