mRNA_H-elongata_contig15820.3776.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 123 bits (309), Expect = 8.710e-31 Identity = 62/111 (55.86%), Postives = 87/111 (78.38%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGTT 332
NVV+DMQDAGMA++ES +ADI++N F++V++GIR+SLG N V++N+F++ S GLYTY+GSD P + SDGRPSDN F +N I N GVKIK+ +DT+IT + +GT+
Sbjct: 362 NVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS 472
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 117 bits (292), Expect = 1.350e-28 Identity = 55/109 (50.46%), Postives = 83/109 (76.15%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGT 329
N +++M DAG+A++ESF+ADIHDN V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP+ N+F +N ++N+ GVK K +++ ++T +GT
Sbjct: 307 NKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGT 414
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.920e-28 Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 308
N VYDM+DAGMAIMES A IHDNTFTNV+YGIR+S+G N V +N F EC +YG+YTY+G+D PEAS D G DN+F+ NT+ E GVKI+KA + T
Sbjct: 692 NTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFT 792
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.860e-27 Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 308
N VYDM+DAGMAIMES A I+DNTFTNV+YGIR+S+G N V +N F EC +YG+YTY+G+D PEAS D G DN+F+ NT+ E GVKI+KA T
Sbjct: 753 NTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIAFT 853
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.070e-26 Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEA-SSDGRPSDNSFYDNTISNT--ETGVKIKKANDTLITGEIKSG 326
NVVY+MQDAGMA+MES+DA+I+DN+FTN YGIR+SLG G N + +N+F ++YGLYTY GSD P+ +S+GRPSDN F NTI GV IK+ + + + +G
Sbjct: 485 NVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTG 595
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 3.630e-25 Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 3
Query: 36 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEAS-SDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
A+MESF A+I+DNT N +YGIR+SLG +N ++DN FD S YGLYTYKGSD P+ S +DGR DNSF NTISNT+ +KIK+ +D T +
Sbjct: 710 ALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNV 804
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI) HSP 1 Score: 105 bits (261), Expect = 5.770e-24 Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 3
Query: 36 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
A +ESFDADI+DN N +YGIR+SLG G+N + +N FD SKYGLYTYKGSD+P+ S+ GRP N F NT+SNT+ GV K+ +D + +
Sbjct: 544 AFLESFDADIYDNRIVNCKYGIRLSLGSGDNDITNNTFDNISKYGLYTYKGSDSPDVSN-GRPKGNKFEGNTVSNTKIGVLGKEGDDNIFKNNV 636
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 103 bits (258), Expect = 1.510e-23 Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKAND 296
N + +MQDAG+A++ESFDA I+ N +YGIR+SLG GNN VY N F + S+YGLYTY+GSD P+ S DGRPS N N + + GVKIK+ +D
Sbjct: 737 NTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDD 833
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5J9X8_9PHAE (MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X8_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 6.850e-21 Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query: 18 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGE 314
MQD GMA++ES +ADI++N F++V++GIR+SLG +N V++N+F+E GSD P + SDG PSDN F + I N GVKIK+ +D +ITGE
Sbjct: 1 MQDTGMALLESINADIYNNEFSSVKFGIRLSLGSSDNHVHENLFEE----------GSDEPTDGVSDGHPSDNLFGNKRILNAAKGVKIKEGDDAVITGE 90
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 7.810e-20 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3
Query: 3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
N V+D DAG+A++ESF+AD+ +NTF N +YG+R+S+G +N +N+ SKY YTY GSD P+ S GR +N F N+ S E +KIK+A+ T +
Sbjct: 354 NYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNV 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15820.3776.1 >prot_H-elongata_contig15820.3776.1 ID=prot_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYback to top mRNA from alignment at H-elongata_contig15820:2367..2939- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15820.3776.1 ID=mRNA_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig15820:2367..2939- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15820:2367..2939- >mRNA_H-elongata_contig15820.3776.1 ID=mRNA_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig15820:2367..2939- (Himanthalia elongata Himel1 dioecious)back to top |