mRNA_H-elongata_contig15820.3776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15820.3776.1
Unique NamemRNA_H-elongata_contig15820.3776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 8.710e-31
Identity = 62/111 (55.86%), Postives = 87/111 (78.38%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGTT 332
            NVV+DMQDAGMA++ES +ADI++N F++V++GIR+SLG   N V++N+F++ S  GLYTY+GSD P +  SDGRPSDN F +N I N   GVKIK+ +DT+IT  + +GT+
Sbjct:  362 NVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS 472          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.350e-28
Identity = 55/109 (50.46%), Postives = 83/109 (76.15%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGT 329
            N +++M DAG+A++ESF+ADIHDN    V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP+ N+F +N ++N+  GVK K +++ ++T    +GT
Sbjct:  307 NKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGT 414          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.920e-28
Identity = 62/104 (59.62%), Postives = 76/104 (73.08%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 308
            N VYDM+DAGMAIMES  A IHDNTFTNV+YGIR+S+G   N V +N F EC +YG+YTY+G+D PEAS D  G   DN+F+ NT+   E GVKI+KA   + T
Sbjct:  692 NTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFT 792          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.860e-27
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 308
            N VYDM+DAGMAIMES  A I+DNTFTNV+YGIR+S+G   N V +N F EC +YG+YTY+G+D PEAS D  G   DN+F+ NT+   E GVKI+KA     T
Sbjct:  753 NTVYDMEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIAFT 853          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.070e-26
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEA-SSDGRPSDNSFYDNTISNT--ETGVKIKKANDTLITGEIKSG 326
            NVVY+MQDAGMA+MES+DA+I+DN+FTN  YGIR+SLG G N + +N+F   ++YGLYTY GSD P+  +S+GRPSDN F  NTI       GV IK+ +  +    + +G
Sbjct:  485 NVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTG 595          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.630e-25
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   36 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEAS-SDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
            A+MESF A+I+DNT  N +YGIR+SLG  +N ++DN FD  S YGLYTYKGSD P+ S +DGR  DNSF  NTISNT+  +KIK+ +D   T  +
Sbjct:  710 ALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNV 804          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 5.770e-24
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 3
Query:   36 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
            A +ESFDADI+DN   N +YGIR+SLG G+N + +N FD  SKYGLYTYKGSD+P+ S+ GRP  N F  NT+SNT+ GV  K+ +D +    +
Sbjct:  544 AFLESFDADIYDNRIVNCKYGIRLSLGSGDNDITNNTFDNISKYGLYTYKGSDSPDVSN-GRPKGNKFEGNTVSNTKIGVLGKEGDDNIFKNNV 636          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.510e-23
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKAND 296
            N + +MQDAG+A++ESFDA I+ N     +YGIR+SLG GNN VY N F + S+YGLYTY+GSD P+ S DGRPS N    N + +   GVKIK+ +D
Sbjct:  737 NTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDD 833          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5J9X8_9PHAE (MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.850e-21
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   18 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGE 314
            MQD GMA++ES +ADI++N F++V++GIR+SLG  +N V++N+F+E          GSD P +  SDG PSDN F +  I N   GVKIK+ +D +ITGE
Sbjct:    1 MQDTGMALLESINADIYNNEFSSVKFGIRLSLGSSDNHVHENLFEE----------GSDEPTDGVSDGHPSDNLFGNKRILNAAKGVKIKEGDDAVITGE 90          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.810e-20
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    3 NVVYDMQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 317
            N V+D  DAG+A++ESF+AD+ +NTF N +YG+R+S+G  +N   +N+    SKY  YTY GSD P+  S GR  +N F  N+ S  E  +KIK+A+ T     +
Sbjct:  354 NYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNV 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI8.710e-3155.86Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE1.350e-2850.46MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JNF5_9PHAE9.920e-2859.62MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LDB5_ECTSI1.860e-2758.65Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G8D9_ECTSI1.070e-2653.15Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FWE8_ECTSI3.630e-2556.84Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LRN0_ECTSI5.770e-2454.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LC73_ECTSI1.510e-2354.08Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5J9X8_9PHAE6.850e-2149.00MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI7.810e-2043.81Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15820contigH-elongata_contig15820:2367..2939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue9.2e-21
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15820.3776.1prot_H-elongata_contig15820.3776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15820 2367..2922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.4696712-CDS-H-elongata_contig15820:2366..25451622929932.4696712-CDS-H-elongata_contig15820:2366..2545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 2367..2545 -
1691679212.9418657-CDS-H-elongata_contig15820:2366..25451691679212.9418657-CDS-H-elongata_contig15820:2366..2545Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 2367..2545 -
1622929932.4836876-CDS-H-elongata_contig15820:2774..29221622929932.4836876-CDS-H-elongata_contig15820:2774..2922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 2775..2922 -
1691679212.9545004-CDS-H-elongata_contig15820:2774..29221691679212.9545004-CDS-H-elongata_contig15820:2774..2922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15820 2775..2922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.4953253-UTR-H-elongata_contig15820:2922..29391622929932.4953253-UTR-H-elongata_contig15820:2922..2939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15820 2923..2939 -
1691679212.9640858-UTR-H-elongata_contig15820:2922..29391691679212.9640858-UTR-H-elongata_contig15820:2922..2939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15820 2923..2939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15820.3776.1

>prot_H-elongata_contig15820.3776.1 ID=prot_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKY
GLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI
KSGTTNGA*
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mRNA from alignment at H-elongata_contig15820:2367..2939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15820.3776.1 ID=mRNA_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig15820:2367..2939- (Himanthalia elongata Himel1 dioecious)
ACAACGTCGTGTACGATATGCAGGACGCTGGCATGGCTATCATGGAGTCT TTCGACGCTGATATCCACGATAACACCTTCACGAACGTCGAGTATGGCAT CCGTATTAGCCTCGGTGGAGGCAACAATACGGTGTACGATAACGTGTTCG ACGAATGCTCTAAGTGTGAGTATTAATGTTCAGTTTGTGGCACAGCGATG ATCATTACTTCACCCTTACAAATCGGTGTCGCGTTTGCCGTAGGTGGGAC ACAAAGAACGGAGTTATTGCGACATGAGTGTTCGCATTTGCAGCAGCCCT ATTCAACGTATTCTTCCCTTTTTCCTTGTACATATCCGCCCATTCTCCGG GTGCCTACTTGTTCTCGTCTTGCCTCACATGGCGATCTCTGCAGATGGTC TATACACCTACAAGGGTTCCGACACCCCCGAGGCGTCTTCCGACGGCCGG CCTAGTGATAACAGCTTCTACGACAACACCATATCTAACACCGAAACGGG CGTCAAGATCAAAAAAGCGAACGACACTCTCATCACCGGTGAAATAAAAT CAGGAACCACCAATGGTGCCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig15820:2367..2939-

>mRNA_H-elongata_contig15820.3776.1 ID=mRNA_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig15820:2367..2939- (Himanthalia elongata Himel1 dioecious)
ATGCAGGACGCTGGCATGGCTATCATGGAGTCTTTCGACGCTGATATCCA
CGATAACACCTTCACGAACGTCGAGTATGGCATCCGTATTAGCCTCGGTG
GAGGCAACAATACGGTGTACGATAACGTGTTCGACGAATGCTCTAAGTAT
GCAGGACGCTGGCATGGCTATCATGGAGTCTTTCGACGCTGATATCCACG
ATAACACCTTCACGAACGTCGAGTATGGCATCCGTATTAGCCTCGGTGGA
GGCAACAATACGGTGTACGATAACGTGTTCGACGAATGCTCTAAGTATGG
TCTATACACCTACAAGGGTTCCGACACCCCCGAGGCGTCTTCCGACGGCC
GGCCTAGTGATAACAGCTTCTACGACAACACCATATCTAACACCGAAACG
GGCGTCAAGATCAAAAAAGCGAACGACACTCTCATCACCGGTGAAATAAA
ATCAGGAACCACCAATGGTGCCTAGATGGTCTATACACCTACAAGGGTTC
CGACACCCCCGAGGCGTCTTCCGACGGCCGGCCTAGTGATAACAGCTTCT
ACGACAACACCATATCTAACACCGAAACGGGCGTCAAGATCAAAAAAGCG
AACGACACTCTCATCACCGGTGAAATAAAATCAGGAACCACCAATGGTGC
CTAG
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