mRNA_H-elongata_contig158140.3775.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI) HSP 1 Score: 189 bits (480), Expect = 9.290e-56 Identity = 86/133 (64.66%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
+CWVFMHLQKCGGSTVK +L D WG RF FIYDSMRWK G +F F + KW+VMTGGY EALR S + CR+FT+FRHPI+R+VSAYFYCR++ GD ACASEV+ A+D DLL FAKHWG+F +R
Sbjct: 176 QCWVFMHLQKCGGSTVKDLLEDRWGSRF--FIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALR 306
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI) HSP 1 Score: 179 bits (453), Expect = 9.380e-52 Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 1
Query: 1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
+CWVFMHLQKCGGSTVK +L ++G R Y IYDS +WK+G D F + W+VM GGY EALRRS +D CR+FT+FRHPI+R+VSAYFYCR+ GD ACASEV++A+D DLL FAKHWG+F VR
Sbjct: 155 QCWVFMHLQKCGGSTVKYMLRRSYGSR--YSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVR 285
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.290e-44 Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1
Query: 1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD-----NKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
+CW+F HLQK GG+TVKR+L D+WG YDS +WK G + + A WS GGY EALRR+ A CRWFTVFRHP+SRLVSAY+YCR P DQ CASE +++R+ DL+ FA+HWG+F +R
Sbjct: 87 RCWIFNHLQKAGGTTVKRLLFDSWGSEST--TYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALR 222
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.580e-30 Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 4 CWVFMHLQKCGGSTVKRILSDTWGPR-FAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMT-GGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
CWVF H+ K GG TV++++ + + ++D + W G + A F++E +V T GGY E LR D C+WFTVFRHP+SR+VSAYFYC+ DQ CA+ VL+A DLL FA+HWG++G+R
Sbjct: 52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSY----AETFVKEN--AVFTYGGYTEGLRMYD--DRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLR 177
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI) HSP 1 Score: 110 bits (276), Expect = 6.080e-27 Identity = 62/130 (47.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 22 LQKCGGSTVKRILSD-TWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD-NKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVL--NARDADLLEFAKHWGSFGVR 399
+ K GGSTVK +L+ T +YDS +W G DF A+ F+ + S+M G Y E LR L +C+WFT+FRHPI RLVSAYFYC+ P D CA+ L NA D DL FA+HWG FG+R
Sbjct: 1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDF----AQDFLGDEN-SLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLR 125
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE) HSP 1 Score: 100 bits (248), Expect = 5.770e-22 Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 4 CWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
CW+FMH+ K G S +R+ ++ W R ++D+++W+ G DGFA + W ++ GG E+LR + C+W T+FRHPI+RL+SAY +C P D C L+ FA+ WG+F +R
Sbjct: 273 CWIFMHMDKSGASGARRVATERW--RKDELVFDTVQWRRG----DGFAADVMASH-WKLLHGGCVESLRNHK--ERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMR 391
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.830e-21 Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 4 CWVFMHLQKCGGSTVKRILSD------TWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGV 396
CWV+ + K GG++++R++ D T F + Y++ GD + I +R+ S++ G Y E LR + + C+WFT+ RHPI+RLVSA+ YC +P DQ CA+ + D D+ +FA+HWG+ GV
Sbjct: 37 CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNA------GDR----GVQQILDRRPSLIWGAYTEGLRPYATVLG-CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGV 162
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.910e-21 Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 4 CWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGV 396
CWVF H K GG+TVK L + R W GD + + K ++ GGY E LR +SA C+WFT+ RHPI+RL+SA++YC DQ CA+ + D D+ +FAKHWG++ +
Sbjct: 37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDK----GIQDLLNDKPVLIAGGYAEGLR-TSAFQG-CKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYAL 161
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 7.840e-17 Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 22 LQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
+ K G S +R+ ++ W R ++D+++W+ G DGFA + R W ++ GG E+LR C+W T+FRHPI+RL+SAY +C P D C L FA+ WG+F +R
Sbjct: 1 MDKSGASGARRVATEQW--RKDELVFDTVQWRRG----DGFAADVMASR-WKLLHGGCVESLRNHKG--RSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMR 113
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.730e-8 Identity = 50/147 (34.01%), Postives = 69/147 (46.94%), Query Frame = 1
Query: 4 CWVFMHLQKCGGSTVKRILSDT----WGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD---NKCRWFTVFRHPISRLVSAYFYCRA-----LPGDQAC--ASEVLNARDADLLEFAK-HWGSFGVR 399
C VF H+ K GGST+K L + GPR + GG ++ F S + GY E +R+ L+ C +FT+ RHP+ RLVSA+FYC L + C A + L A D LLEFA+ HW + +
Sbjct: 41 CTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAG------GGKRINSCKEAFNS----SAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATDR-LLEFAQQHWKNMAYK 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig158140.3775.1 >prot_H-elongata_contig158140.3775.1 ID=prot_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp MHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEEback to top mRNA from alignment at H-elongata_contig158140:195..1149- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig158140.3775.1 ID=mRNA_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig158140:195..1149- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig158140:195..1149- >mRNA_H-elongata_contig158140.3775.1 ID=mRNA_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig158140:195..1149- (Himanthalia elongata Himel1 dioecious)back to top |