mRNA_H-elongata_contig158140.3775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158140.3775.1
Unique NamemRNA_H-elongata_contig158140.3775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 9.290e-56
Identity = 86/133 (64.66%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            +CWVFMHLQKCGGSTVK +L D WG RF  FIYDSMRWK G +F   F  +     KW+VMTGGY EALR S  +   CR+FT+FRHPI+R+VSAYFYCR++ GD ACASEV+ A+D DLL FAKHWG+F +R
Sbjct:  176 QCWVFMHLQKCGGSTVKDLLEDRWGSRF--FIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAGCRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALR 306          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.380e-52
Identity = 82/133 (61.65%), Postives = 100/133 (75.19%), Query Frame = 1
Query:    1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            +CWVFMHLQKCGGSTVK +L  ++G R  Y IYDS +WK+G D    F  +      W+VM GGY EALRRS  +D  CR+FT+FRHPI+R+VSAYFYCR+  GD ACASEV++A+D DLL FAKHWG+F VR
Sbjct:  155 QCWVFMHLQKCGGSTVKYMLRRSYGSR--YSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAGCRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVR 285          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.290e-44
Identity = 72/138 (52.17%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 KCWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD-----NKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            +CW+F HLQK GG+TVKR+L D+WG       YDS +WK G  + +  A        WS   GGY EALRR+ A         CRWFTVFRHP+SRLVSAY+YCR  P DQ CASE +++R+ DL+ FA+HWG+F +R
Sbjct:   87 RCWIFNHLQKAGGTTVKRLLFDSWGSEST--TYDSYQWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALR 222          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.580e-30
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    4 CWVFMHLQKCGGSTVKRILSDTWGPR-FAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMT-GGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            CWVF H+ K GG TV++++      +  +  ++D + W  G  +    A  F++E   +V T GGY E LR     D  C+WFTVFRHP+SR+VSAYFYC+    DQ CA+ VL+A   DLL FA+HWG++G+R
Sbjct:   52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSY----AETFVKEN--AVFTYGGYTEGLRMYD--DRDCKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLR 177          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 6.080e-27
Identity = 62/130 (47.69%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   22 LQKCGGSTVKRILSD-TWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD-NKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVL--NARDADLLEFAKHWGSFGVR 399
            + K GGSTVK +L+  T        +YDS +W  G DF    A+ F+ +   S+M G Y E LR    L   +C+WFT+FRHPI RLVSAYFYC+  P D  CA+  L  NA D DL  FA+HWG FG+R
Sbjct:    1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDF----AQDFLGDEN-SLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLR 125          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.770e-22
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    4 CWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            CW+FMH+ K G S  +R+ ++ W  R    ++D+++W+ G    DGFA   +    W ++ GG  E+LR     +  C+W T+FRHPI+RL+SAY +C   P D  C           L+ FA+ WG+F +R
Sbjct:  273 CWIFMHMDKSGASGARRVATERW--RKDELVFDTVQWRRG----DGFAADVMASH-WKLLHGGCVESLRNHK--ERSCKWLTIFRHPIARLLSAYHHCLEAPKDPVCPP----TESTGLVVFAELWGNFAMR 391          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.830e-21
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    4 CWVFMHLQKCGGSTVKRILSD------TWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGV 396
            CWV+  + K GG++++R++ D      T    F +  Y++      GD       + I +R+ S++ G Y E LR  + +   C+WFT+ RHPI+RLVSA+ YC  +P DQ CA+ +    D D+ +FA+HWG+ GV
Sbjct:   37 CWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNA------GDR----GVQQILDRRPSLIWGAYTEGLRPYATVLG-CKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGV 162          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.910e-21
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    4 CWVFMHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGV 396
            CWVF H  K GG+TVK  L +    R          W   GD       + +   K  ++ GGY E LR +SA    C+WFT+ RHPI+RL+SA++YC     DQ CA+ +    D D+ +FAKHWG++ +
Sbjct:   37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDK----GIQDLLNDKPVLIAGGYAEGLR-TSAFQG-CKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYAL 161          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 7.840e-17
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   22 LQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGDQACASEVLNARDADLLEFAKHWGSFGVR 399
            + K G S  +R+ ++ W  R    ++D+++W+ G    DGFA   +  R W ++ GG  E+LR        C+W T+FRHPI+RL+SAY +C   P D  C           L  FA+ WG+F +R
Sbjct:    1 MDKSGASGARRVATEQW--RKDELVFDTVQWRRG----DGFAADVMASR-WKLLHGGCVESLRNHKG--RSCKWITIFRHPIARLLSAYDHCLGAPKDPVCPP----TESTGLAAFAELWGNFAMR 113          
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Match: A0A6H5JT23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT23_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.730e-8
Identity = 50/147 (34.01%), Postives = 69/147 (46.94%), Query Frame = 1
Query:    4 CWVFMHLQKCGGSTVKRILSDT----WGPRFAYFIYDSMRWKMGGDFLDGFARRFIEERKWSVMTGGYPEALRRSSALD---NKCRWFTVFRHPISRLVSAYFYCRA-----LPGDQAC--ASEVLNARDADLLEFAK-HWGSFGVR 399
            C VF H+ K GGST+K  L  +     GPR    +        GG  ++     F      S +  GY E +R+   L+     C +FT+ RHP+ RLVSA+FYC       L   + C  A + L A D  LLEFA+ HW +   +
Sbjct:   41 CTVFHHMVKSGGSTIKHNLHISSRAAGGPRPGSCVAG------GGKRINSCKEAFNS----SAVIMGYAELMRQDGPLEAVRRDCEYFTLLRHPVDRLVSAFFYCPTDHDLQLRPPKWCGYADDPLPATDR-LLEFAQQHWKNMAYK 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158140.3775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G716_ECTSI9.290e-5664.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWQ3_ECTSI9.380e-5261.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G715_ECTSI1.290e-4452.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JY77_9PHAE3.580e-3044.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS84_ECTSI6.080e-2747.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQM0_9PHAE5.770e-2236.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE2.830e-2136.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE2.910e-2138.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI7.840e-1734.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT23_9PHAE2.730e-834.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158140contigH-elongata_contig158140:195..1149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue6.5e-42
Seed eggNOG ortholog2880.D7G716
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size384
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158140.3775.1prot_H-elongata_contig158140.3775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158140 195..1134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.4004316-CDS-H-elongata_contig158140:194..5071622929932.4004316-CDS-H-elongata_contig158140:194..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158140 195..507 -
1691679212.9044242-CDS-H-elongata_contig158140:194..5071691679212.9044242-CDS-H-elongata_contig158140:194..507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158140 195..507 -
1622929932.4124353-CDS-H-elongata_contig158140:1063..11341622929932.4124353-CDS-H-elongata_contig158140:1063..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158140 1064..1134 -
1691679212.9162574-CDS-H-elongata_contig158140:1063..11341691679212.9162574-CDS-H-elongata_contig158140:1063..1134Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158140 1064..1134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.424921-UTR-H-elongata_contig158140:1134..11491622929932.424921-UTR-H-elongata_contig158140:1134..1149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158140 1135..1149 -
1691679212.9271317-UTR-H-elongata_contig158140:1134..11491691679212.9271317-UTR-H-elongata_contig158140:1134..1149Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158140 1135..1149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158140.3775.1

>prot_H-elongata_contig158140.3775.1 ID=prot_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MHLQKCGGSTVKRILSDTWGPRFAYFIYDSMRWKMGGDFLDGFARRFIEE
RKWSVMTGGYPEALRRSSALDNKCRWFTVFRHPISRLVSAYFYCRALPGD
QACASEVLNARDADLLEFAKHWGSFGVR
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mRNA from alignment at H-elongata_contig158140:195..1149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158140.3775.1 ID=mRNA_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig158140:195..1149- (Himanthalia elongata Himel1 dioecious)
AAGTGCTGGGTCTTCATGCACCTTCAGAAATGCGGAGGGTCGACAGTGAA GCGCATCCTGTCCGACACATGGGGACCCAGGTTTGCGTGAATACCTTGAG GCGGTAGTGGGGTGTCGATGTCAGTCGGGTGTCGGGACATTCACCAGGAG AGTTCTGGCTGTAGATTGGCAAAATTAGCCGTCGTTTAAGGGTCGAGGTT GACGATAAATGGTGGCGGGTTGAAGGCAGCGGGATTCTCGACCGTACGGA AATAGCCCTCGTACTCACCGCGCATCTAATATATACGGTATATAAAAAAA GAAGCTTTGTCCAGCTCATAGCGAAACCTTCCAGTGTAAAACTGGGTTTC CGTCGATGTCGTAGTCGATGTCCGGGCCGGATCGGTGGTGAATGCCCGCT CGACAACAGCGACAATTGGTGAAGAGGCACCGTTTCTCGACCGCAATCGA TAAATTTGGTGGATTCACCGCACCGAGAAGTTAGTTGATATCATGATCAC CGAAAAACGCGGAGCCGCAACTACCCATTGCATCTCCCCGGTGCGACGAT CACAAACCGTTACAACCCGCGCTGCAGAGGCACCGTGTCACGATTGGCCC GCTTGTCCCTCCCGCCTCCCGATTGGCCCGCGAAACCGAAAGATACTTCA TCTACGACTCGATGCGCTGGAAGATGGGGGGCGACTTCCTGGACGGCTTC GCCCGAAGGTTCATCGAAGAGCGAAAGTGGAGTGTCATGACGGGGGGTTA CCCCGAGGCTCTCCGCCGCTCCTCCGCGCTCGATAACAAATGCCGGTGGT TCACCGTGTTCCGACACCCGATATCGCGCCTGGTGTCCGCCTATTTCTAC TGCCGTGCGCTCCCCGGAGACCAAGCCTGCGCCTCGGAGGTGCTGAACGC TCGGGACGCCGATCTTCTCGAGTTCGCGAAGCACTGGGGAAGCTTTGGGG TAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig158140:195..1149-

>mRNA_H-elongata_contig158140.3775.1 ID=mRNA_H-elongata_contig158140.3775.1|Name=mRNA_H-elongata_contig158140.3775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig158140:195..1149- (Himanthalia elongata Himel1 dioecious)
ATGCACCTTCAGAAATGCGGAGGGTCGACAGTGAAGCGCATCCTGTCCGA
CACATGGGGACCCAGGTTTGCATGCACCTTCAGAAATGCGGAGGGTCGAC
AGTGAAGCGCATCCTGTCCGACACATGGGGACCCAGGTTTGCATACTTCA
TCTACGACTCGATGCGCTGGAAGATGGGGGGCGACTTCCTGGACGGCTTC
GCCCGAAGGTTCATCGAAGAGCGAAAGTGGAGTGTCATGACGGGGGGTTA
CCCCGAGGCTCTCCGCCGCTCCTCCGCGCTCGATAACAAATGCCGGTGGT
TCACCGTGTTCCGACACCCGATATCGCGCCTGGTGTCCGCCTATTTCTAC
TGCCGTGCGCTCCCCGGAGACCAAGCCTGCGCCTCGGAGGTGCTGAACGC
TCGGGACGCCGATCTTCTCGAGTTCGCGAAGCACTGGGGAAGCTTTGGGG
TAAGAATACTTCATCTACGACTCGATGCGCTGGAAGATGGGGGGCGACTT
CCTGGACGGCTTCGCCCGAAGGTTCATCGAAGAGCGAAAGTGGAGTGTCA
TGACGGGGGGTTACCCCGAGGCTCTCCGCCGCTCCTCCGCGCTCGATAAC
AAATGCCGGTGGTTCACCGTGTTCCGACACCCGATATCGCGCCTGGTGTC
CGCCTATTTCTACTGCCGTGCGCTCCCCGGAGACCAAGCCTGCGCCTCGG
AGGTGCTGAACGCTCGGGACGCCGATCTTCTCGAGTTCGCGAAGCACTGG
GGAAGCTTTGGGGTAAGA
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