mRNA_H-elongata_contig157415.3742.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI) HSP 1 Score: 155 bits (391), Expect = 3.240e-42 Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHL----EGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLSREQLRCL 327
+S Y++PSFF CL+ALKEA A+F +VFRTFG DIAEV+ E+NAFCEG+HPLFPG MDG+DG+GDYRVHL EG G VGAFFRD+EG+ LVMGTLDNP R QLR +
Sbjct: 283 ESLYILPSFFRCLLALKEANADFGVVFRTFGDDIAEVSREYNAFCEGEHPLFPGAKMDGSDGRGDYRVHLTDQAEGSHGH-NTVGAFFRDEEGLALVMGTLDNPQDRHQLRSI 394
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE) HSP 1 Score: 149 bits (375), Expect = 4.410e-40 Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1
Query: 1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHL----EGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLSREQLRCL 327
+S Y++PSFF CL+ALKEA A+F +VFRTFG DI EVA E+NAFCEG HPLFPG MDG+DG+GDYRVHL EG G +GAFFRD++G+ LVMGTLDNP R QLR +
Sbjct: 253 ESHYILPSFFWCLLALKEADADFGVVFRTFGDDIPEVAREYNAFCEGNHPLFPGAKMDGSDGRGDYRVHLADQAEGSHGH-NTLGAFFRDEKGLALVMGTLDNPQDRHQLRSI 364
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S0WY97_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WY97_9CHLO) HSP 1 Score: 104 bits (260), Expect = 8.400e-27 Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 10 YVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLS 306
++IP+FFE L+ LK R F+LVFRTFG ++AEV E NAFCEG+HP++P + DG+DG+ D R L G FFRD + LV+GTL+ P S
Sbjct: 3 FIIPAFFELLLHLKATRRSFSLVFRTFGKELAEVVEEFNAFCEGRHPMYPEAVFDGSDGEADMRASLSNPH----QFGTFFRDGDTTALVLGTLEQPKS 97
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S1MSQ0_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MSQ0_ALECA) HSP 1 Score: 102 bits (255), Expect = 3.840e-26 Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFR----DDEGVTLVMGTLDNP 300
+ +++P+FFE L+ LK + F+LVFRTFG D+ EVA E NAFCEG+HPLFPG +DG DG DYR+HL+ + GAFFR DE LV GTL P
Sbjct: 11 EEVFILPAFFELLVHLKRSGRSFSLVFRTFGTDLLEVATEFNAFCEGRHPLFPGAALDGRDGGPDYRIHLDDPSAC----GAFFRASLSGDEDA-LVYGTLRQP 109
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A812YEU2_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YEU2_SYMPI) HSP 1 Score: 96.3 bits (238), Expect = 5.250e-21 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1
Query: 13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
V+ +FF L+ LK ++ F L+FR+FG D+ V+ E N+FCEGKHP+FPG MDG+DG+ DYR H+ GH G F +DE + LV+GT++ P
Sbjct: 209 VVHAFFRLLVELKRSKRSFCLIFRSFGEDLELVSQELNSFCEGKHPMFPGFCMDGSDGEPDYRFHM-GHP---ERYGNFHVEDEELHLVLGTIEQP 300
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S2V4R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4R9_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.440e-21 Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 4 SFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
S +++PSFF L+ L+E EF LVFRTFG DI ++A E NAFCEG HPL+PGV MDG+ G D R+ L H+G F+RD G V TL NP
Sbjct: 168 SHFILPSFFRLLIHLQETGREFHLVFRTFGEDIPKIAGEFNAFCEGAHPLYPGVAMDGSAGGPDRRLLLPLHSG------CFYRDGPGSEGVHLTLVNP 260
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A1Q9D1W4_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D1W4_SYMMI) HSP 1 Score: 95.9 bits (237), Expect = 8.460e-21 Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
V+ +FF L+ LK ++ F+L+FR+FG D+ VA+E N+FCEGKHP+FPG MDG+DG+ DYR H+ H G F +DE + LV+GT++ P
Sbjct: 483 VVHAFFRLLVELKRSKRSFSLIFRSFGEDLELVASELNSFCEGKHPMFPGFCMDGSDGEPDYRFHVT-HP---ERYGNFHVEDEELHLVLGTIEQP 574
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S4S472_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S472_9DINO) HSP 1 Score: 95.5 bits (236), Expect = 1.020e-20 Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDD---EGVTLVMGTLDNP 300
+ ++IP+FFE L+ L+ + F+LVFRTFG D+ EVA E NAFCEG+HPL+PG DG DG DYR+ + G FFR +G LV GTL P
Sbjct: 222 EEVFIIPAFFELLLHLQRSGLSFSLVFRTFGTDLREVAEEFNAFCEGRHPLYPGAAFDGRDGGPDYRIAFNDPSAF----GTFFRSSLCGKGDALVYGTLRQP 320
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A6U8CDI9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8CDI9_9EUGL) HSP 1 Score: 92.4 bits (228), Expect = 5.890e-20 Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 4 SFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVM 282
S++++P+FF L+ L+ +FALVFRTFG D+ EVA E AFC G HPL+PGV MDGT DYR+H + G FFRD GV L M
Sbjct: 148 SYFMLPAFFRLLLNLRAQGRDFALVFRTFGTDLPEVAEELEAFCTGSHPLYPGVRMDGTTDCPDYRLHTD------MAFGEFFRDAHGVQLTM 234
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S2LYP2_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LYP2_9DINO) HSP 1 Score: 92.0 bits (227), Expect = 1.600e-19 Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
+IP+FF L+ LK+ R F L FRTFG D+++VA E FCEG+HP+ PGV MDG+DG DYR+ +E G F R++ + L+MGT+ P
Sbjct: 200 LIPAFFHLLLYLKKERRSFTLCFRTFGQDLSDVARELTDFCEGRHPMNPGVRMDGSDGDPDYRLRMEPD-----RCGTFHREEGKLNLIMGTVLQP 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157415.3742.1 >prot_H-elongata_contig157415.3742.1 ID=prot_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPback to top mRNA from alignment at H-elongata_contig157415:183..799+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157415.3742.1 ID=mRNA_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig157415:183..799+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157415:183..799+ >mRNA_H-elongata_contig157415.3742.1 ID=mRNA_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig157415:183..799+ (Himanthalia elongata Himel1 dioecious)back to top |