mRNA_H-elongata_contig157415.3742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157415.3742.1
Unique NamemRNA_H-elongata_contig157415.3742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: D8LHY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY8_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.240e-42
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHL----EGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLSREQLRCL 327
            +S Y++PSFF CL+ALKEA A+F +VFRTFG DIAEV+ E+NAFCEG+HPLFPG  MDG+DG+GDYRVHL    EG  G    VGAFFRD+EG+ LVMGTLDNP  R QLR +
Sbjct:  283 ESLYILPSFFRCLLALKEANADFGVVFRTFGDDIAEVSREYNAFCEGEHPLFPGAKMDGSDGRGDYRVHLTDQAEGSHGH-NTVGAFFRDEEGLALVMGTLDNPQDRHQLRSI 394          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A6H5L7S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S9_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 4.410e-40
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHL----EGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLSREQLRCL 327
            +S Y++PSFF CL+ALKEA A+F +VFRTFG DI EVA E+NAFCEG HPLFPG  MDG+DG+GDYRVHL    EG  G    +GAFFRD++G+ LVMGTLDNP  R QLR +
Sbjct:  253 ESHYILPSFFWCLLALKEADADFGVVFRTFGDDIPEVAREYNAFCEGNHPLFPGAKMDGSDGRGDYRVHLADQAEGSHGH-NTLGAFFRDEKGLALVMGTLDNPQDRHQLRSI 364          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S0WY97_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WY97_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 8.400e-27
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   10 YVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNPLS 306
            ++IP+FFE L+ LK  R  F+LVFRTFG ++AEV  E NAFCEG+HP++P  + DG+DG+ D R  L          G FFRD +   LV+GTL+ P S
Sbjct:    3 FIIPAFFELLLHLKATRRSFSLVFRTFGKELAEVVEEFNAFCEGRHPMYPEAVFDGSDGEADMRASLSNPH----QFGTFFRDGDTTALVLGTLEQPKS 97          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S1MSQ0_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MSQ0_ALECA)

HSP 1 Score: 102 bits (255), Expect = 3.840e-26
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFR----DDEGVTLVMGTLDNP 300
            +  +++P+FFE L+ LK +   F+LVFRTFG D+ EVA E NAFCEG+HPLFPG  +DG DG  DYR+HL+  +      GAFFR     DE   LV GTL  P
Sbjct:   11 EEVFILPAFFELLVHLKRSGRSFSLVFRTFGTDLLEVATEFNAFCEGRHPLFPGAALDGRDGGPDYRIHLDDPSAC----GAFFRASLSGDEDA-LVYGTLRQP 109          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A812YEU2_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YEU2_SYMPI)

HSP 1 Score: 96.3 bits (238), Expect = 5.250e-21
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
            V+ +FF  L+ LK ++  F L+FR+FG D+  V+ E N+FCEGKHP+FPG  MDG+DG+ DYR H+ GH       G F  +DE + LV+GT++ P
Sbjct:  209 VVHAFFRLLVELKRSKRSFCLIFRSFGEDLELVSQELNSFCEGKHPMFPGFCMDGSDGEPDYRFHM-GHP---ERYGNFHVEDEELHLVLGTIEQP 300          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S2V4R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4R9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.440e-21
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    4 SFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
            S +++PSFF  L+ L+E   EF LVFRTFG DI ++A E NAFCEG HPL+PGV MDG+ G  D R+ L  H+G       F+RD  G   V  TL NP
Sbjct:  168 SHFILPSFFRLLIHLQETGREFHLVFRTFGEDIPKIAGEFNAFCEGAHPLYPGVAMDGSAGGPDRRLLLPLHSG------CFYRDGPGSEGVHLTLVNP 260          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A1Q9D1W4_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D1W4_SYMMI)

HSP 1 Score: 95.9 bits (237), Expect = 8.460e-21
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
            V+ +FF  L+ LK ++  F+L+FR+FG D+  VA+E N+FCEGKHP+FPG  MDG+DG+ DYR H+  H       G F  +DE + LV+GT++ P
Sbjct:  483 VVHAFFRLLVELKRSKRSFSLIFRSFGEDLELVASELNSFCEGKHPMFPGFCMDGSDGEPDYRFHVT-HP---ERYGNFHVEDEELHLVLGTIEQP 574          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S4S472_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S472_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-20
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDD---EGVTLVMGTLDNP 300
            +  ++IP+FFE L+ L+ +   F+LVFRTFG D+ EVA E NAFCEG+HPL+PG   DG DG  DYR+     +      G FFR     +G  LV GTL  P
Sbjct:  222 EEVFIIPAFFELLLHLQRSGLSFSLVFRTFGTDLREVAEEFNAFCEGRHPLYPGAAFDGRDGGPDYRIAFNDPSAF----GTFFRSSLCGKGDALVYGTLRQP 320          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A6U8CDI9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8CDI9_9EUGL)

HSP 1 Score: 92.4 bits (228), Expect = 5.890e-20
Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 SFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVM 282
            S++++P+FF  L+ L+    +FALVFRTFG D+ EVA E  AFC G HPL+PGV MDGT    DYR+H +         G FFRD  GV L M
Sbjct:  148 SYFMLPAFFRLLLNLRAQGRDFALVFRTFGTDLPEVAEELEAFCTGSHPLYPGVRMDGTTDCPDYRLHTD------MAFGEFFRDAHGVQLTM 234          
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Match: A0A7S2LYP2_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LYP2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 1.600e-19
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 VIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHPLFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP 300
            +IP+FF  L+ LK+ R  F L FRTFG D+++VA E   FCEG+HP+ PGV MDG+DG  DYR+ +E         G F R++  + L+MGT+  P
Sbjct:  200 LIPAFFHLLLYLKKERRSFTLCFRTFGQDLSDVARELTDFCEGRHPMNPGVRMDGSDGDPDYRLRMEPD-----RCGTFHREEGKLNLIMGTVLQP 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157415.3742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LHY8_ECTSI3.240e-4267.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7S9_9PHAE4.410e-4065.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0WY97_9CHLO8.400e-2749.49Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S1MSQ0_ALECA3.840e-2651.92Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812YEU2_SYMPI5.250e-2147.92Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A7S2V4R9_9STRA6.440e-2151.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Q9D1W4_SYMMI8.460e-2147.92Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]
A0A7S4S472_9DINO1.020e-2047.57Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6U8CDI9_9EUGL5.890e-2050.54Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2LYP2_9DINO1.600e-1946.88Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157415contigH-elongata_contig157415:183..799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue3.5e-36
Seed eggNOG ortholog2880.D8LHY8
EggNOG OGs2CXG7@1,2RX7W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.5943725-CDS-H-elongata_contig157415:182..3611622929929.5943725-CDS-H-elongata_contig157415:182..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157415 183..361 +
1691679211.9566152-CDS-H-elongata_contig157415:182..3611691679211.9566152-CDS-H-elongata_contig157415:182..361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157415 183..361 +
1622929929.6085844-CDS-H-elongata_contig157415:651..7991622929929.6085844-CDS-H-elongata_contig157415:651..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157415 652..799 +
1691679211.973887-CDS-H-elongata_contig157415:651..7991691679211.973887-CDS-H-elongata_contig157415:651..799Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157415 652..799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157415.3742.1prot_H-elongata_contig157415.3742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157415 183..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157415.3742.1

>prot_H-elongata_contig157415.3742.1 ID=prot_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
DSFYVIPSFFECLMALKEARAEFALVFRTFGGDIAEVAAEHNAFCEGKHP
LFPGVIMDGTDGQGDYRVHLEGHAGVIPNVGAFFRDDEGVTLVMGTLDNP
LSREQLRCL
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mRNA from alignment at H-elongata_contig157415:183..799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157415.3742.1 ID=mRNA_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig157415:183..799+ (Himanthalia elongata Himel1 dioecious)
GACAGCTTTTACGTTATCCCCTCTTTTTTCGAGTGTCTTATGGCGCTGAA GGAGGCACGCGCAGAGTTCGCCTTGGTGTTCAGAACATTCGGTGGTGATA TCGCCGAAGTCGCTGCGGAGCACAACGCTTTCTGCGAGGGAAAACACCCG CTCTTCCCAGGAGTCATAATGGACGGCACGTGAGCTCGACCAAATTCCCT CCTAAGGTTTTGCGCGCTGGTTCGGCTAGGCGGGGCGCTCGAACCCGACC GCCAACCCGCGCGCTCTATGCTGCATTCGCGCGAACCCTTCCCTCGCAAA GTCTGCCACGTACAGCAGGTTCAGTCTCTGCTGCGCGGCACGCTGTTTTC GTTCGTCGCTGAGCGGTGCTACGGGCGCGTGGATTCTATTCGCTGTGTTA TTTGCCTTACAATGCACGATACGCTGCGACGCACGATACGCTGCAACGCA CGATGGACCTTGTCAACAGGGATGGGCAGGGCGACTATCGGGTGCACCTG GAAGGACATGCAGGAGTTATTCCCAACGTGGGTGCATTCTTCCGCGACGA TGAAGGGGTGACCTTGGTCATGGGCACTCTGGATAATCCTCTCAGCCGAG AACAGCTCAGGTGTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig157415:183..799+

>mRNA_H-elongata_contig157415.3742.1 ID=mRNA_H-elongata_contig157415.3742.1|Name=mRNA_H-elongata_contig157415.3742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig157415:183..799+ (Himanthalia elongata Himel1 dioecious)
GACAGCTTTTACGTTATCCCCTCTTTTTTCGAGTGTCTTATGGCGCTGAA
GGAGGCACGCGCAGAGTTCGCCTTGGTGTTCAGAACATTCGGTGGTGATA
TCGCCGAAGTCGCTGCGGAGCACAACGCTTTCTGCGAGGGAAAACACCCG
CTCTTCCCAGGAGTCATAATGGACGGCACGACAGCTTTTACGTTATCCCC
TCTTTTTTCGAGTGTCTTATGGCGCTGAAGGAGGCACGCGCAGAGTTCGC
CTTGGTGTTCAGAACATTCGGTGGTGATATCGCCGAAGTCGCTGCGGAGC
ACAACGCTTTCTGCGAGGGAAAACACCCGCTCTTCCCAGGAGTCATAATG
GACGGCACGGATGGGCAGGGCGACTATCGGGTGCACCTGGAAGGACATGC
AGGAGTTATTCCCAACGTGGGTGCATTCTTCCGCGACGATGAAGGGGTGA
CCTTGGTCATGGGCACTCTGGATAATCCTCTCAGCCGAGAACAGCTCAGG
TGTCTTGGATGGGCAGGGCGACTATCGGGTGCACCTGGAAGGACATGCAG
GAGTTATTCCCAACGTGGGTGCATTCTTCCGCGACGATGAAGGGGTGACC
TTGGTCATGGGCACTCTGGATAATCCTCTCAGCCGAGAACAGCTCAGGTG
TCTT
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