prot_H-elongata_contig157029.3715.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig157029.3715.1
Unique Nameprot_H-elongata_contig157029.3715.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
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BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-19
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:    2 KDQVSDMQDAVDDLALSMFDSLRLLPSSTAFERDK--ICTVGQPNQGR-ESVSRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL 98
            KD VS MQ++VD LALSMFDSLRL+P S   +     +  + Q   G+ ++     AV T+  WA  V+ LA+GVLK+A  LD LIDVLPGA+LREDQQ+
Sbjct:   25 KDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQM 124
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BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.080e-8
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 0 
Query:    2 KDQVSDMQDAVDDLALSMFDSLRLLPSSTA---FERDKICTVGQPNQGRESVSRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL 98
            +DQVS MQD VD LAL+MF+S+R LP   A   F  + + + GQ +  ++   +         W   V  L+  V+ +A  LD++I+ LPG D  E QQL
Sbjct:   22 QDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQHGQQ---------WIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQL 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV36_ECTSI1.200e-1952.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA8.080e-838.00Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..98
e-value: 1.9E-12
score: 47.6
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 1..98
NoneNo IPR availableGENE3D1.20.58.470coord: 1..98
e-value: 1.0E-9
score: 40.4
NoneNo IPR availablePANTHERPTHR13381:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 21coord: 1..98
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 3..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157029contigH-elongata_contig157029:714..1007 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157029.3715.1mRNA_H-elongata_contig157029.3715.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig157029 714..1007 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig157029.3715.1 ID=prot_H-elongata_contig157029.3715.1|Name=mRNA_H-elongata_contig157029.3715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MKDQVSDMQDAVDDLALSMFDSLRLLPSSTAFERDKICTVGQPNQGRESV
SRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
IPR037212Med7/Med21-like