mRNA_H-elongata_contig157029.3715.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157029.3715.1
Unique NamemRNA_H-elongata_contig157029.3715.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Match: D7FV36_ECTSI (Mediator of RNA polymerase II transcription subunit 21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV36_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-19
Identity = 52/100 (52.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:    4 KDQVSDMQDAVDDLALSMFDSLRLLPSSTAFERDK--ICTVGQPNQGR-ESVSRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL 294
            KD VS MQ++VD LALSMFDSLRL+P S   +     +  + Q   G+ ++     AV T+  WA  V+ LA+GVLK+A  LD LIDVLPGA+LREDQQ+
Sbjct:   25 KDAVSAMQESVDQLALSMFDSLRLIPFSEEVKGGARGVAPLQQQQPGQPDAAPLRRAVTTNAAWADTVQSLADGVLKQARALDGLIDVLPGAELREDQQM 124
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BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Match: A0A835Z332_9STRA (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z332_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.080e-8
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:    4 KDQVSDMQDAVDDLALSMFDSLRLLPSSTA---FERDKICTVGQPNQGRESVSRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL 294
            +DQVS MQD VD LAL+MF+S+R LP   A   F  + + + GQ +  ++   +         W   V  L+  V+ +A  LD++I+ LPG D  E QQL
Sbjct:   22 QDQVSVMQDKVDQLALAMFESIRSLPDPAADPSFAPEFVVSAGQSDAQQQHGQQ---------WIDAVAALSARVVAEARALDNMIETLPGMDKTEAQQL 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157029.3715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV36_ECTSI1.200e-1952.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z332_9STRA8.080e-838.00Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157029contigH-elongata_contig157029:714..1007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med21
Ec32 orthologEc-12_005030.1
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929927.479167-CDS-H-elongata_contig157029:713..10071622929927.479167-CDS-H-elongata_contig157029:713..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157029 714..1007 -
1691679211.088839-CDS-H-elongata_contig157029:713..10071691679211.088839-CDS-H-elongata_contig157029:713..1007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157029 714..1007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157029.3715.1prot_H-elongata_contig157029.3715.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157029 714..1007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157029.3715.1

>prot_H-elongata_contig157029.3715.1 ID=prot_H-elongata_contig157029.3715.1|Name=mRNA_H-elongata_contig157029.3715.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MKDQVSDMQDAVDDLALSMFDSLRLLPSSTAFERDKICTVGQPNQGRESV
SRHEAVVTDDVWASRVKDLAEGVLKKAAWLDHLIDVLPGADLREDQQL
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mRNA from alignment at H-elongata_contig157029:714..1007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157029.3715.1 ID=mRNA_H-elongata_contig157029.3715.1|Name=mRNA_H-elongata_contig157029.3715.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig157029:714..1007- (Himanthalia elongata Himel1 dioecious)
ATGAAAGATCAAGTTTCGGACATGCAAGATGCCGTGGACGACCTAGCGCT
TAGTATGTTTGACTCTCTTCGATTGTTACCATCATCAACCGCATTCGAGA
GAGACAAGATATGTACTGTTGGGCAGCCCAACCAGGGTCGAGAATCAGTA
TCGAGGCACGAAGCGGTTGTCACGGACGATGTGTGGGCTAGTCGGGTAAA
AGACCTTGCGGAGGGGGTCTTGAAGAAGGCTGCTTGGTTGGATCATCTTA
TCGACGTCCTACCTGGAGCTGACCTACGCGAAGACCAACAGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig157029:714..1007-

>mRNA_H-elongata_contig157029.3715.1 ID=mRNA_H-elongata_contig157029.3715.1|Name=mRNA_H-elongata_contig157029.3715.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig157029:714..1007- (Himanthalia elongata Himel1 dioecious)
ATGAAAGATCAAGTTTCGGACATGCAAGATGCCGTGGACGACCTAGCGCT
TAGTATGTTTGACTCTCTTCGATTGTTACCATCATCAACCGCATTCGAGA
GAGACAAGATATGTACTGTTGGGCAGCCCAACCAGGGTCGAGAATCAGTA
TCGAGGCACGAAGCGGTTGTCACGGACGATGTGTGGGCTAGTCGGGTAAA
AGACCTTGCGGAGGGGGTCTTGAAGAAGGCTGCTTGGTTGGATCATCTTA
TCGACGTCCTACCTGGAGCTGACCTACGCGAAGACCAACAGTTAATGAAA
GATCAAGTTTCGGACATGCAAGATGCCGTGGACGACCTAGCGCTTAGTAT
GTTTGACTCTCTTCGATTGTTACCATCATCAACCGCATTCGAGAGAGACA
AGATATGTACTGTTGGGCAGCCCAACCAGGGTCGAGAATCAGTATCGAGG
CACGAAGCGGTTGTCACGGACGATGTGTGGGCTAGTCGGGTAAAAGACCT
TGCGGAGGGGGTCTTGAAGAAGGCTGCTTGGTTGGATCATCTTATCGACG
TCCTACCTGGAGCTGACCTACGCGAAGACCAACAGTTA
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