mRNA_H-elongata_contig156501.3683.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156501.3683.1
Unique NamemRNA_H-elongata_contig156501.3683.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A7S6ZPA6_9STRA (Photosystem II reaction center protein J n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.330e-19
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL
Sbjct:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.350e-14
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M   GRVPLWLVAL GGLGVI VVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: B7T216_VAULI (Photosystem II reaction center protein J n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T216_VAULI)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-13
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M   GR+PLWL+AL+GGLGV+ VVG+FIFG+YSGLGSSL
Sbjct:    1 MTGTGRIPLWLIALIGGLGVLAVVGSFIFGAYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: PSBJ_PHATC (Photosystem II reaction center protein J n=55 Tax=cellular organisms TaxID=131567 RepID=PSBJ_PHATC)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M N GR+PLWLV LVGGL VIT++G FI+GSYSGLGSSL
Sbjct:    1 MANTGRIPLWLVGLVGGLAVITMLGLFIYGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: M1KFV8_DIALT (Photosystem II reaction center protein J n=3 Tax=Eukaryota TaxID=2759 RepID=M1KFV8_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M N GR+PLWLVA+VGGL VIT++  FIFGSYSGLGSSL
Sbjct:    1 MSNTGRIPLWLVAVVGGLAVITMLSLFIFGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A3R5V0N1_9STRA (Photosystem II reaction center protein J n=13 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5V0N1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M + GRVPLWLVA V GLG++T+VG FI+GSYSGLGSSL
Sbjct:    1 MASTGRVPLWLVAFVAGLGILTIVGIFIYGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A0D3M5E5_9STRA (Photosystem II reaction center protein J n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5E5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M + GRVPLWL+ALVGGL V TV+G FI+GSYSGLGSSL
Sbjct:    1 MASAGRVPLWLIALVGGLAVFTVLGIFIYGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A1X9PUB1_9RHOD (Photosystem II reaction center protein J n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1X9PUB1_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M + GRVPLWL+ALVGG+ VITV+G FI+GSYSG+GSSL
Sbjct:    1 MNSTGRVPLWLIALVGGIAVITVLGIFIYGSYSGIGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A410D2N6_9STRA (Photosystem II reaction center protein J n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A410D2N6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.590e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M + GRVPLW VA + GLGVIT+VG FI+GSYSGLGSSL
Sbjct:    1 MASAGRVPLWFVAFIAGLGVITIVGIFIYGSYSGLGSSL 39
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BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A0G4KBH6_9FLOR (Photosystem II reaction center protein J n=2 Tax=Rhodomelaceae TaxID=2803 RepID=A0A0G4KBH6_9FLOR)

HSP 1 Score: 62.0 bits (149), Expect = 4.590e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 117
            M N GRVPLWLVA  GG+ V+TVVG FI+GSYSG+GSSL
Sbjct:    1 MSNTGRVPLWLVATAGGIAVLTVVGIFIYGSYSGIGSSL 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPA6_9STRA4.330e-19100.00Photosystem II reaction center protein J n=1 Tax=S... [more]
D1J7D2_ECTSI2.350e-1487.18Photosystem II reaction center protein J n=52 Tax=... [more]
B7T216_VAULI3.920e-1374.36Photosystem II reaction center protein J n=1 Tax=V... [more]
PSBJ_PHATC1.120e-1276.92Photosystem II reaction center protein J n=55 Tax=... [more]
M1KFV8_DIALT2.270e-1276.92Photosystem II reaction center protein J n=3 Tax=E... [more]
A0A3R5V0N1_9STRA2.270e-1274.36Photosystem II reaction center protein J n=13 Tax=... [more]
A0A0D3M5E5_9STRA2.270e-1276.92Photosystem II reaction center protein J n=4 Tax=E... [more]
A0A1X9PUB1_9RHOD3.230e-1274.36Photosystem II reaction center protein J n=2 Tax=R... [more]
A0A410D2N6_9STRA4.590e-1274.36Photosystem II reaction center protein J n=1 Tax=P... [more]
A0A0G4KBH6_9FLOR4.590e-1274.36Photosystem II reaction center protein J n=2 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156501contigH-elongata_contig156501:1169..1288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size120
Cds size120
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929923.4373436-CDS-H-elongata_contig156501:1168..12881622929923.4373436-CDS-H-elongata_contig156501:1168..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156501 1169..1288 -
1691679210.0099695-CDS-H-elongata_contig156501:1168..12881691679210.0099695-CDS-H-elongata_contig156501:1168..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156501 1169..1288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156501.3683.1prot_H-elongata_contig156501.3683.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156501 1169..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156501.3683.1

>prot_H-elongata_contig156501.3683.1 ID=prot_H-elongata_contig156501.3683.1|Name=mRNA_H-elongata_contig156501.3683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL*
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mRNA from alignment at H-elongata_contig156501:1169..1288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156501.3683.1 ID=mRNA_H-elongata_contig156501.3683.1|Name=mRNA_H-elongata_contig156501.3683.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig156501:1169..1288- (Himanthalia elongata Himel1 dioecious)
ATGCCTAATCCGGGCCGCGTCCCTTTATGGCTCGTTGCGTTGGTCGGTGG
TCTTGGTGTTATTACCGTTGTTGGGACCTTTATTTTTGGGTCTTACTCAG
GTTTAGGTTCATCTTTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig156501:1169..1288-

>mRNA_H-elongata_contig156501.3683.1 ID=mRNA_H-elongata_contig156501.3683.1|Name=mRNA_H-elongata_contig156501.3683.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig156501:1169..1288- (Himanthalia elongata Himel1 dioecious)
ATGCCTAATCCGGGCCGCGTCCCTTTATGGCTCGTTGCGTTGGTCGGTGG
TCTTGGTGTTATTACCGTTGTTGGGACCTTTATTTTTGGGTCTTACTCAG
GTTTAGGTTCATCTTTATGAATGCCTAATCCGGGCCGCGTCCCTTTATGG
CTCGTTGCGTTGGTCGGTGGTCTTGGTGTTATTACCGTTGTTGGGACCTT
TATTTTTGGGTCTTACTCAGGTTTAGGTTCATCTTTATGA
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