prot_H-elongata_contig156501.3683.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig156501.3683.1
Unique Nameprot_H-elongata_contig156501.3683.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A7S6ZPA6_9STRA (Photosystem II reaction center protein J n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.330e-19
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL
Sbjct:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.350e-14
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M   GRVPLWLVAL GGLGVI VVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: B7T216_VAULI (Photosystem II reaction center protein J n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T216_VAULI)

HSP 1 Score: 64.7 bits (156), Expect = 3.920e-13
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M   GR+PLWL+AL+GGLGV+ VVG+FIFG+YSGLGSSL
Sbjct:    1 MTGTGRIPLWLIALIGGLGVLAVVGSFIFGAYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: PSBJ_PHATC (Photosystem II reaction center protein J n=55 Tax=cellular organisms TaxID=131567 RepID=PSBJ_PHATC)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M N GR+PLWLV LVGGL VIT++G FI+GSYSGLGSSL
Sbjct:    1 MANTGRIPLWLVGLVGGLAVITMLGLFIYGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: M1KFV8_DIALT (Photosystem II reaction center protein J n=3 Tax=Eukaryota TaxID=2759 RepID=M1KFV8_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M N GR+PLWLVA+VGGL VIT++  FIFGSYSGLGSSL
Sbjct:    1 MSNTGRIPLWLVAVVGGLAVITMLSLFIFGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A3R5V0N1_9STRA (Photosystem II reaction center protein J n=13 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5V0N1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M + GRVPLWLVA V GLG++T+VG FI+GSYSGLGSSL
Sbjct:    1 MASTGRVPLWLVAFVAGLGILTIVGIFIYGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A0D3M5E5_9STRA (Photosystem II reaction center protein J n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5E5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M + GRVPLWL+ALVGGL V TV+G FI+GSYSGLGSSL
Sbjct:    1 MASAGRVPLWLIALVGGLAVFTVLGIFIYGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A1X9PUB1_9RHOD (Photosystem II reaction center protein J n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1X9PUB1_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M + GRVPLWL+ALVGG+ VITV+G FI+GSYSG+GSSL
Sbjct:    1 MNSTGRVPLWLIALVGGIAVITVLGIFIYGSYSGIGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A410D2N6_9STRA (Photosystem II reaction center protein J n=1 Tax=Pseudellipsoidion edaphicum TaxID=1431838 RepID=A0A410D2N6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.590e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M + GRVPLW VA + GLGVIT+VG FI+GSYSGLGSSL
Sbjct:    1 MASAGRVPLWFVAFIAGLGVITIVGIFIYGSYSGLGSSL 39          
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Match: A0A0G4KBH6_9FLOR (Photosystem II reaction center protein J n=2 Tax=Rhodomelaceae TaxID=2803 RepID=A0A0G4KBH6_9FLOR)

HSP 1 Score: 62.0 bits (149), Expect = 4.590e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39
            M N GRVPLWLVA  GG+ V+TVVG FI+GSYSG+GSSL
Sbjct:    1 MSNTGRVPLWLVATAGGIAVLTVVGIFIYGSYSGIGSSL 39          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156501.3683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPA6_9STRA4.330e-19100.00Photosystem II reaction center protein J n=1 Tax=S... [more]
D1J7D2_ECTSI2.350e-1487.18Photosystem II reaction center protein J n=52 Tax=... [more]
B7T216_VAULI3.920e-1374.36Photosystem II reaction center protein J n=1 Tax=V... [more]
PSBJ_PHATC1.120e-1276.92Photosystem II reaction center protein J n=55 Tax=... [more]
M1KFV8_DIALT2.270e-1276.92Photosystem II reaction center protein J n=3 Tax=E... [more]
A0A3R5V0N1_9STRA2.270e-1274.36Photosystem II reaction center protein J n=13 Tax=... [more]
A0A0D3M5E5_9STRA2.270e-1276.92Photosystem II reaction center protein J n=4 Tax=E... [more]
A0A1X9PUB1_9RHOD3.230e-1274.36Photosystem II reaction center protein J n=2 Tax=R... [more]
A0A410D2N6_9STRA4.590e-1274.36Photosystem II reaction center protein J n=1 Tax=P... [more]
A0A0G4KBH6_9FLOR4.590e-1274.36Photosystem II reaction center protein J n=2 Tax=R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002682Photosystem II PsbJPFAMPF01788PsbJcoord: 1..39
e-value: 9.4E-21
score: 73.4
IPR002682Photosystem II PsbJPANTHERPTHR34812FAMILY NOT NAMEDcoord: 3..39
IPR002682Photosystem II PsbJHAMAPMF_01305PSII_PsbJcoord: 1..39
score: 15.164
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR037267Photosystem II PsbJ superfamilySUPERFAMILY161021Photosystem II reaction center protein J, PsbJcoord: 6..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156501contigH-elongata_contig156501:1169..1288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156501.3683.1mRNA_H-elongata_contig156501.3683.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig156501 1169..1288 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig156501.3683.1 ID=prot_H-elongata_contig156501.3683.1|Name=mRNA_H-elongata_contig156501.3683.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002682PSII_PsbJ
IPR037267PSII_PsbJ_sf