mRNA_H-elongata_contig156375.3677.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: D8LFY1_ECTSI (Diphthine--ammonia ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY1_ECTSI) HSP 1 Score: 238 bits (608), Expect = 3.520e-70 Identity = 153/285 (53.68%), Postives = 173/285 (60.70%), Query Frame = 1
Query: 1 RWFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTLPPRPSYSPPAVAAPAGTKSAPWRSATGVACLEVGGSFHGAELKLCVSHASAVASAVGASLARGCVFATLYVSEEA------------------AKAARAEAAGSRSPGVKCGREKSSRGNGAKAGGSCGXXXXXXXXXX-----VXECXSLMEARSGQEEAEARAEKASMGLQGDEDDDSAEEGWTSDPE 786
+WF+G NPPSRSCV+VPLP GC +MLD+VALRGSG AL +EG+AC RQVLHVRSIS+WAPVCIGPYCQANTL PG L+AGQIGLQ ASMT P R S PP A AT + H EL LCVSHAS+VASAVGAS++RGCVFATLYVSEEA AKA + GR + R + + AG S G X V EC LME R QE+AEA AE A G +G ED DSAE+GWTSDPE
Sbjct: 311 KWFEGENPPSRSCVSVPLPLGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGPYCQANTLGPGGGFALVAGQIGLQAASMTFPARRSGRPPVPCA---------GGATSKEAISERRPIHEQELSLCVSHASSVASAVGASVSRGCVFATLYVSEEAXXXXXXXXXXXXXXVAAHAKAGAMDRTDEEGAVAGEGRGDTRRTSSSDAGTSAGAXAPAGGSGGCLEGMVDECRVLMEGRLSQEQAEAAAEAA--GTEGGEDGDSAEDGWTSDPE 584
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A6H5K721_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K721_9PHAE) HSP 1 Score: 192 bits (487), Expect = 5.980e-54 Identity = 143/262 (54.58%), Postives = 155/262 (59.16%), Query Frame = 1
Query: 73 MLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTLPPRPSYSPPAVAAPAGTKSAPWRSATGVACLEVGGSFHGAELKLCVSHASAVASAVGASLARGCVFATLYVSEEA---------AKAARA---------EAAGSRSPGVKCGREKSSR------GNGAKAGGSCGXXXXXXXXXXVXECXSLMEARSGQEEAEARAEKASMGLQGDEDDDSAEEGWTSDPE 786
MLD+VALRGSG AL +EG+AC RQVLHVRSIS+WAPVCIGPYCQANTL PG L+AGQIGLQ ASMT P R S PPA A G+ S S T H EL LCVSHAS+VASAVGAS++RGCVFATLYVSEEA A A A E G G R SS G A AGGS G V EC LME + QE+AEA AE A G EDDDSAE+GWTSDPE
Sbjct: 1 MLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGPYCQANTLGPGGGFALVAGQIGLQAASMTFPARRSGRPPAPCA-GGSASKEAMSETRP--------IHEQELSLCVSHASSVASAVGASVSRGCVFATLYVSEEAXXXXXXXXTAAVAHATAGVMDRTDEEGGVAGEGRGDTRRPSSSDAGTSAGAAAPAGGSGGSLEGM-----VDECRVLMEGKLTQEQAEAAAEVAGT-EGGGEDDDSAEDGWTSDPE 247
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A835YTU4_9STRA (Diphthine--ammonia ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU4_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.240e-18 Identity = 67/163 (41.10%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 22 PPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTLPPRPSYSPPAVAAPAGTKSAPWRSATGVACLEVGGSFHGAELKLCVSHASAVASAVGASLARGCVFATLYVSEEA 510
PPSR+CV LP +MLD VA RGS R + R L VRS+S WAPVCIGPY QAN L A+ L++GQIGL P SM + P G G EL CV HA+ V A+GAS +R + ATLYV+ A
Sbjct: 321 PPSRACVQARLPPPYAVMLDCVAQRGSAP---RPRGPAQDRATLLVRSLSPWAPVCIGPYSQANCLVGSGALVLLSGQIGLLPCSMAVAP--------------------------------GGLDG-ELGWCVRHAARVLRALGASASRSVLCATLYVTASA 447
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: K8YYW5_NANGC (Diphthine--ammonia ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYW5_NANGC) HSP 1 Score: 94.7 bits (234), Expect = 2.380e-18 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 7 FDGVNPPSRSCVAVPLP------SGC--W----IMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
F +PPSRSCV +PL C W ++LDV+AL GSGAA+ + + + RQVLHV+S+S WAPVCIGPY QAN L+ G+ + +AGQIGL PA+M L
Sbjct: 326 FHPHHPPSRSCVELPLARPYDDEEACRGWEEVEVLLDVMALAGSGAAM--DAGSFQPRQVLHVKSLSGWAPVCIGPYSQANLLSHGH-LAFLAGQIGLDPATMVL 427
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A1V9YW44_9STRA (Diphthine--ammonia ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YW44_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.940e-16 Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 4 WFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTLPPRPSYS 306
+F G++PPSRSCV + + + + +D +ALRG+G L R VLHV+S+S WAP+CIGPY QA+T+A ++ L AGQI L+PA+M L P P+ +
Sbjct: 354 YFPGLHPPSRSCVQLDMAAA--VQIDCLALRGAG--LNPRVPTPVQRSVLHVQSLSEWAPMCIGPYSQASTVA--QSVVLCAGQIPLEPATMALLPAPTLA 448
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A250XPR4_9CHLO (Diphthine--ammonia ligase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPR4_9CHLO) HSP 1 Score: 87.0 bits (214), Expect = 1.070e-15 Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 1 RWFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
+ F + PPSR+ V VPLPSGC ++LD++ R S A G R VLHV+SIS+WAP CIGPY QA T I +AGQI L P+SMTL
Sbjct: 377 KTFPSLEPPSRATVQVPLPSGCPLLLDLLLARPSPGASHLVG-----RTVLHVQSISSWAPSCIGPYSQATTY---RGICYLAGQIPLLPSSMTL 463
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A7S1VFR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFR5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.070e-15 Identity = 51/109 (46.79%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 4 WFDGVNPPSRSCVAVP---LPSGCWIMLDVVALRGSG------------AALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
+F PPSRS VA+ LP G ++LD + GSG AA + + + RQVLHV+SIS WAPVC+GPY Q NTL +AI L+AGQIGL P++M L
Sbjct: 28 FFGTTLPPSRSTVAIGKGVLPGGRRVLLDCLVQLGSGGYMRQNAASNKMAAAALQTTTSKLRQVLHVQSISYWAPVCVGPYSQVNTLR--SAIHLLAGQIGLVPSTMKL 134
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A383WGJ8_TETOB (Diphthine--ammonia ligase n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WGJ8_TETOB) HSP 1 Score: 85.9 bits (211), Expect = 2.860e-15 Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 1 RWFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
R V+PPSR+CV VPLP+GC ++LDV+ R ++ R+VLHV+SIS+WAP CIGPY QA + N + +AGQI L PASM +
Sbjct: 397 RHLPQVDPPSRACVQVPLPAGCPVLLDVLFARQPDQQQQQQPL---DRRVLHVQSISSWAPSCIGPYSQATSC---NGLIYMAGQIPLDPASMAI 485
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A1W0A4Q7_9STRA (Diphthine--ammonia ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4Q7_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.020e-14 Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 4 WFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
+F G+ PPSRSCV V + + + +D +A+RG+G + R+VL+++S+S WAP+CIGPYCQANT++ ++ AGQI L+P +MT+
Sbjct: 353 YFPGLTPPSRSCVQVDMENT--LQIDCLAIRGAGPCSTI--TIATQREVLYIQSLSEWAPMCIGPYCQANTVS--KSVIFCAGQIPLKPETMTM 440
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Match: A0A7S2KWY5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWY5_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.360e-14 Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 4 WFDGVNPPSRSCVAVP---LPSGCWIMLDVVALRGSGAAL---------LREGSACEHRQVLHVRSISNWAPVCIGPYCQANTLAPGNAITLIAGQIGLQPASMTL 285
+F PPSRSCVA+ +P ++LD+ A + SG A+ L S R+VLHV+ IS WAPVC+GPY QANT+ G +T++AGQIGL P +M L
Sbjct: 93 FFGAELPPSRSCVAIGEGVIPGNRRVLLDLCAQKSSGKAMRSNDGGTKQLLHSSGNLLREVLHVQGISYWAPVCVGPYSQANTVRGG--MTMLAGQIGLDPPTMAL 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156375.3677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156375.3677.1 >prot_H-elongata_contig156375.3677.1 ID=prot_H-elongata_contig156375.3677.1|Name=mRNA_H-elongata_contig156375.3677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp RWFDGVNPPSRSCVAVPLPSGCWIMLDVVALRGSGAALLREGSACEHRQVback to top mRNA from alignment at H-elongata_contig156375:1..1489- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156375.3677.1 ID=mRNA_H-elongata_contig156375.3677.1|Name=mRNA_H-elongata_contig156375.3677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1489bp|location=Sequence derived from alignment at H-elongata_contig156375:1..1489- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156375:1..1489- >mRNA_H-elongata_contig156375.3677.1 ID=mRNA_H-elongata_contig156375.3677.1|Name=mRNA_H-elongata_contig156375.3677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig156375:1..1489- (Himanthalia elongata Himel1 dioecious)back to top |