mRNA_H-elongata_contig156171.3665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig156171.3665.1
Unique NamemRNA_H-elongata_contig156171.3665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JTA3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.150e-35
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVK 429
            P S+ + +QSK+   W   M AE EG  + G F+     P G NVI A+WV+    D+ G I KAK+RLVA GF QKYGVDY ETF+ T++ +SI++ +A+A + D    + D+ QAFV++ LD +VFMKLP GC   SG VV+
Sbjct:  196 PGSYREARQSKHTVIWDKGMSAEFEGLLRAGMFALAVKAPIGCNVIDARWVYKWSADKTGKIVKAKARLVAEGFKQKYGVDYLETFSPTANAASIRLLIALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMSGKVVR 339          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.070e-34
Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P+++ +     +   W +A R E  G +  GTF  +    G NVI+AKWV+S K D  G+  +AK+RLVARGF Q+ GVD+FETF+   S++SI++  AIA   DW L   D  QAFV++ LD  VF++LP GCG  SG VV+L R+LYG+
Sbjct: 1251 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGL 1397          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.660e-34
Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQ--------TGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P+++ +     +   W +A R  + G  +        + +  G+    G NVI+AKWVFS K D  G+  +AK+RLVARGF Q+ GVD+FETF+   S++SI++  AIA   DW L + D  QAFV++ LD  VF++LP GCG  SG VV+L R+LYG+
Sbjct:   97 PETYGEAHAGPHHHIWTNAERKXVAGEARWAGAGDICSSSHGGRDQARGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGL 255          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.460e-33
Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P+++ +     +   W +A R E  G +  GTF  Q    G NVI+AKWV+S K D  G+  +AK+RLVARGF Q+ GVD+FETF+   S++SI++  AIA   DW   +    QAFV++ LD  VF++LP  CG RSG VV+L R+LYG+
Sbjct: 1369 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGL 1516          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.510e-33
Identity = 70/152 (46.05%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSG-QSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P + A V +S Y E W  AMR E EGH  TGTFS     P G   +++KW FS KT+++G I   K+RLVARGF Q   VDYF + +   S +SIK+ +A+A +    L + DV QA+  A LD +VF+KLP GCG +S ++ K +RA+YG+
Sbjct:  291 PMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGL 442          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.610e-32
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P ++ DV  SKY   W +A+  E +GH +TGTFS  S +P G   I+AKW+FS KT+  G I   K+R+VARGF Q  GVD+  + +A  S  SIK  +A++ +N     + D+ QA+  A L  +++++LP+GCG  +G  VK++RALYG+
Sbjct:  117 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 268          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.960e-32
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P ++ DV  SKY   W +A+  E +GH +TGTFS  S +P G   I+AKW+FS KT+  G I   K+R+VARGF Q  GVD+  + +A  S  SIK  +A++ +N     + D+ QA+  A L  +++++LP+GCG  +G  VK++RALYG+
Sbjct:  297 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 448          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.990e-32
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P ++ DV  SKY   W +A+  E +GH +TGTFS  S +P G   I+AKW+FS KT+  G I   K+R+VARGF Q  GVD+  + +A  S  SIK  +A++ +N     + D+ QA+  A L  +++++LP+GCG  +G  VK++RALYG+
Sbjct:  318 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 469          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.110e-32
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P ++ DV  SKY   W +A+  E +GH +TGTFS  S +P G   I+AKW+FS KT+  G I   K+R+VARGF Q  GVD+  + +A  S  SIK  +A++ +N     + D+ QA+  A L  +++++LP+GCG  +G  VK++RALYG+
Sbjct:  550 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 701          
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.200e-32
Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
            P ++ DV  SKY   W +A+  E +GH +TGTFS  S +P G   I+AKW+FS KT+  G I   K+R+VARGF Q  GVD+  + +A  S  SIK  +A++ +N     + D+ QA+  A L  +++++LP+GCG  +G  VK++RALYG+
Sbjct: 1012 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 1163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTA3_9PHAE1.150e-3547.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBJ6_9PHAE3.070e-3446.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMK9_9PHAE5.660e-3442.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAC2_9PHAE1.460e-3345.70Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JC10_9PHAE4.510e-3346.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE2.610e-3242.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE2.960e-3242.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0Q0_9PHAE2.990e-3242.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE3.110e-3242.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRY9_9PHAE3.200e-3242.76CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig156171contigH-elongata_contig156171:1062..1514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score124.0
Seed ortholog evalue5.9e-26
Seed eggNOG ortholog120017.I2FSX8
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929920.9809113-CDS-H-elongata_contig156171:1061..15141622929920.9809113-CDS-H-elongata_contig156171:1061..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156171 1062..1514 +
1691679209.0800903-CDS-H-elongata_contig156171:1061..15141691679209.0800903-CDS-H-elongata_contig156171:1061..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig156171 1062..1514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig156171.3665.1prot_H-elongata_contig156171.3665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig156171 1062..1514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig156171.3665.1

>prot_H-elongata_contig156171.3665.1 ID=prot_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWV
FSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAI
AVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYG
V
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mRNA from alignment at H-elongata_contig156171:1062..1514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig156171.3665.1 ID=mRNA_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig156171:1062..1514+ (Himanthalia elongata Himel1 dioecious)
CCAAAGAGTTGGGCGGACGTGAAACAGTCCAAGTACGCAGAATTTTGGCG TAGTGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGTTTT CCGGTCAAAGTGTCCCAGCAGGTGTAAATGTCATTACGGCAAAGTGGGTT TTTTCTCTTAAGACTGACCGCGATGGTTTTATCACCAAGGCGAAATCGAG GTTGGTTGCGCGCGGGTTTGGGCAAAAGTATGGTGTGGACTATTTTGAGA CGTTCGCCGCGACCTCGTCCGTGTCATCCATCAAGGTGGCGATGGCCATT GCCGTTCAAAACGACTGGCCACTGTATTATCTCGACGTAACACAAGCGTT TGTTAGAGCCCCCCTGGATACCGACGTTTTCATGAAGCTCCCAAACGGTT GCGGTAGGAGGTCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTACGGG GTG
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Coding sequence (CDS) from alignment at H-elongata_contig156171:1062..1514+

>mRNA_H-elongata_contig156171.3665.1 ID=mRNA_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig156171:1062..1514+ (Himanthalia elongata Himel1 dioecious)
CCAAAGAGTTGGGCGGACGTGAAACAGTCCAAGTACGCAGAATTTTGGCG
TAGTGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGTTTT
CCGGTCAAAGTGTCCCAGCAGGTGTAAATGTCATTACGGCAAAGTGGGTT
TTTTCTCTTAAGACTGACCGCGATGGTTTTATCACCAAGGCGAAATCGAG
GTTGGTTGCGCGCGGGTTTGGGCAAAAGTATGGTGTGGACTATTTTGAGA
CGTTCGCCGCGACCTCGTCCGTGTCATCCATCAAGGTGGCGATGGCCATT
GCCGTTCAAAACGACTGGCCACTGTATTATCTCGACGTAACACAAGCGTT
TGTTAGAGCCCCCCTGGATACCGACGTTTTCATGAAGCTCCCAAACGGTT
GCGGTAGGAGGTCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTACGGG
GTGCCAAAGAGTTGGGCGGACGTGAAACAGTCCAAGTACGCAGAATTTTG
GCGTAGTGCGATGCGCGCAGAGTTGGAGGGGCATGATCAGACCGGTACGT
TTTCCGGTCAAAGTGTCCCAGCAGGTGTAAATGTCATTACGGCAAAGTGG
GTTTTTTCTCTTAAGACTGACCGCGATGGTTTTATCACCAAGGCGAAATC
GAGGTTGGTTGCGCGCGGGTTTGGGCAAAAGTATGGTGTGGACTATTTTG
AGACGTTCGCCGCGACCTCGTCCGTGTCATCCATCAAGGTGGCGATGGCC
ATTGCCGTTCAAAACGACTGGCCACTGTATTATCTCGACGTAACACAAGC
GTTTGTTAGAGCCCCCCTGGATACCGACGTTTTCATGAAGCTCCCAAACG
GTTGCGGTAGGAGGTCGGGCGACGTGGTGAAGCTAGACAGGGCACTCTAC
GGGGTG
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