mRNA_H-elongata_contig156171.3665.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JTA3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA3_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.150e-35 Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVK 429
P S+ + +QSK+ W M AE EG + G F+ P G NVI A+WV+ D+ G I KAK+RLVA GF QKYGVDY ETF+ T++ +SI++ +A+A + D + D+ QAFV++ LD +VFMKLP GC SG VV+
Sbjct: 196 PGSYREARQSKHTVIWDKGMSAEFEGLLRAGMFALAVKAPIGCNVIDARWVYKWSADKTGKIVKAKARLVAEGFKQKYGVDYLETFSPTANAASIRLLIALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMSGKVVR 339
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE) HSP 1 Score: 136 bits (342), Expect = 3.070e-34 Identity = 70/151 (46.36%), Postives = 97/151 (64.24%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P+++ + + W +A R E G + GTF + G NVI+AKWV+S K D G+ +AK+RLVARGF Q+ GVD+FETF+ S++SI++ AIA DW L D QAFV++ LD VF++LP GCG SG VV+L R+LYG+
Sbjct: 1251 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGL 1397
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 5.660e-34 Identity = 68/159 (42.77%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQ--------TGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P+++ + + W +A R + G + + + G+ G NVI+AKWVFS K D G+ +AK+RLVARGF Q+ GVD+FETF+ S++SI++ AIA DW L + D QAFV++ LD VF++LP GCG SG VV+L R+LYG+
Sbjct: 97 PETYGEAHAGPHHHIWTNAERKXVAGEARWAGAGDICSSSHGGRDQARGTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGL 255
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.460e-33 Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P+++ + + W +A R E G + GTF Q G NVI+AKWV+S K D G+ +AK+RLVARGF Q+ GVD+FETF+ S++SI++ AIA DW + QAFV++ LD VF++LP CG RSG VV+L R+LYG+
Sbjct: 1369 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGL 1516
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.510e-33 Identity = 70/152 (46.05%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSG-QSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P + A V +S Y E W AMR E EGH TGTFS P G +++KW FS KT+++G I K+RLVARGF Q VDYF + + S +SIK+ +A+A + L + DV QA+ A LD +VF+KLP GCG +S ++ K +RA+YG+
Sbjct: 291 PMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGL 442
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.610e-32 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P ++ DV SKY W +A+ E +GH +TGTFS S +P G I+AKW+FS KT+ G I K+R+VARGF Q GVD+ + +A S SIK +A++ +N + D+ QA+ A L +++++LP+GCG +G VK++RALYG+
Sbjct: 117 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 268
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.960e-32 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P ++ DV SKY W +A+ E +GH +TGTFS S +P G I+AKW+FS KT+ G I K+R+VARGF Q GVD+ + +A S SIK +A++ +N + D+ QA+ A L +++++LP+GCG +G VK++RALYG+
Sbjct: 297 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 448
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5K0Q0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q0_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.990e-32 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P ++ DV SKY W +A+ E +GH +TGTFS S +P G I+AKW+FS KT+ G I K+R+VARGF Q GVD+ + +A S SIK +A++ +N + D+ QA+ A L +++++LP+GCG +G VK++RALYG+
Sbjct: 318 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 469
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE) HSP 1 Score: 130 bits (327), Expect = 3.110e-32 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P ++ DV SKY W +A+ E +GH +TGTFS S +P G I+AKW+FS KT+ G I K+R+VARGF Q GVD+ + +A S SIK +A++ +N + D+ QA+ A L +++++LP+GCG +G VK++RALYG+
Sbjct: 550 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 701
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE) HSP 1 Score: 130 bits (327), Expect = 3.200e-32 Identity = 65/152 (42.76%), Postives = 97/152 (63.82%), Query Frame = 1
Query: 1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQS-VPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 453
P ++ DV SKY W +A+ E +GH +TGTFS S +P G I+AKW+FS KT+ G I K+R+VARGF Q GVD+ + +A S SIK +A++ +N + D+ QA+ A L +++++LP+GCG +G VK++RALYG+
Sbjct: 1012 PLTYKDVLNSKYKVLWEAAIAKEFDGHKKTGTFSEISGLPEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGL 1163 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig156171.3665.1 >prot_H-elongata_contig156171.3665.1 ID=prot_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWVback to top mRNA from alignment at H-elongata_contig156171:1062..1514+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig156171.3665.1 ID=mRNA_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig156171:1062..1514+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig156171:1062..1514+ >mRNA_H-elongata_contig156171.3665.1 ID=mRNA_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig156171:1062..1514+ (Himanthalia elongata Himel1 dioecious)back to top |