prot_H-elongata_contig156171.3665.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig156171.3665.1
Unique Name	prot_H-elongata_contig156171.3665.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	151

Homology

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BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.390e-42
Identity = 79/152 (51.97%), Postives = 109/152 (71.71%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ + +QSK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QKYGVDY ETF+ T++ +SI++ +A+A + D  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+
Sbjct:  780 PGSYQEARQSKHAAIWDGAMSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGL 931

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BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 4.720e-42
Identity = 78/152 (51.32%), Postives = 109/152 (71.71%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ + ++SKYA+ W  AM AE+EG  + GTF+    VP G NVI A+WVF  K D  G I KAK+RLVA+GF QKYGVDY ETF+ T++ +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+
Sbjct:  715 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGL 866

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BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.900e-41
Identity = 77/152 (50.66%), Postives = 108/152 (71.05%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ + ++SKYA+ W  AM AE+EG  + GTF+    VP   NVI A+WVF  K D  G I KAK+RLVA+GF QKYGVDY ETF+ T++ +S ++ +A+A + +  L + D+ QAFV++ LD +VFMKLP GCG  SG VV+L+++LYG+
Sbjct:  448 PDSYQEAQRSKYAKIWEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGL 599

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BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.390e-40
Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ +  +SK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QK+GVDY ETF+ T++ +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+
Sbjct:  418 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGL 569

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.500e-40
Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ +  +SK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QK+GVDY ETF+ T++ +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+
Sbjct:  482 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGL 633

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.510e-40
Identity = 75/152 (49.34%), Postives = 108/152 (71.05%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ +  +SK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QK+GVDY ETF+ T++ +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG+
Sbjct:  626 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGL 777

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.910e-40
Identity = 75/152 (49.34%), Postives = 107/152 (70.39%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ + ++SKYA+ W  A  AE+EG  + GTF+    VP G NVI A+WVF  K D  G I KAK+RLVA+GF QKYGVDY ETF+ T++ +S ++ +A+A + +  L + D+ QAFV++ LD +VFMK+P GCG  S  VV+L+++LYG+
Sbjct:  679 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGL 830

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.930e-40
Identity = 75/152 (49.34%), Postives = 107/152 (70.39%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ +  +SK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QK+GVDY ETF+ T++ +SI++ +A+A + +  L +LD+ QAFV++ LD +VFMKLP GC   SG +V+L+++LYG 
Sbjct:  832 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGT 983

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.970e-40
Identity = 75/152 (49.34%), Postives = 107/152 (70.39%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ + ++SKYA+ W  A  AE+EG  + GTF+    VP G NVI A+WVF  K D  G I KAK+RLVA+GF QKYGVDY ETF+ T++ +S ++ +A+A + +  L + D+ QAFV++ LD +VFMK+P GCG  S  VV+L+++LYG+
Sbjct:  889 PGSYEEAQRSKYAKIWEGARSAEVEGLMRAGTFTLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGL 1040

[Close]

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 6.840e-39
Identity = 73/152 (48.03%), Postives = 106/152 (69.74%), Query Frame = 0

Query:    1 PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFS-GQSVPAGVNVITAKWVFSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAIAVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYGV 151
            P S+ +  +SK+A  W  AM AE+EG  + GTF+    +P G NVI A+WVF  K D  G I KAK+RLVA+GF QK+GVDY ETF+ T++ +SI++ +A+A + +  L +LD+ QAF ++ LD +V MKLP GC   SG +V+L+++LYG+
Sbjct:  213 PGSYQEALRSKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGL 364

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot

BLAST of mRNA_H-elongata_contig156171.3665.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JB16_9PHAE	1.390e-42	51.97	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JRL9_9PHAE	4.720e-42	51.32	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KKK1_9PHAE	2.900e-41	50.66	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5LDZ0_9PHAE	3.390e-40	49.34	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J594_9PHAE	3.500e-40	49.34	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHE8_9PHAE	3.510e-40	49.34	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L3I1_9PHAE	4.910e-40	49.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K622_9PHAE	4.930e-40	49.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	4.970e-40	49.34	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV80_9PHAE	6.840e-39	48.03	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 37..151 e-value: 1.1E-26 score: 93.9
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..150
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 11..150

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig156171	contig	H-elongata_contig156171:1062..1514 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig156171.3665.1	mRNA_H-elongata_contig156171.3665.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig156171 1062..1514 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig156171.3665.1 ID=prot_H-elongata_contig156171.3665.1|Name=mRNA_H-elongata_contig156171.3665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
PKSWADVKQSKYAEFWRSAMRAELEGHDQTGTFSGQSVPAGVNVITAKWV
FSLKTDRDGFITKAKSRLVARGFGQKYGVDYFETFAATSSVSSIKVAMAI
AVQNDWPLYYLDVTQAFVRAPLDTDVFMKLPNGCGRRSGDVVKLDRALYG
V

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like