mRNA_H-elongata_contig155801.3649.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 9.030e-46 Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 22 MSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILHD-DESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
M PDGF LQA PPP LDQS +KRGVLVKLGL WFGGVI+RRSHP SRQ+YD ILH DES RSMK+PL S STDEDAA+GAWVLLEV+ K+G RR+R TTP+VRL +LA
Sbjct: 1 MDIPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKEGSGRRKRVTTPTVRLTELA 113
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE) HSP 1 Score: 147 bits (372), Expect = 8.610e-44 Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 1
Query: 22 MSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQK--YDSILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
M PD F LQA PPPAL+QS +KRG LV+LGLGWFGGVI+RRSHP SRQ+ Y ILH ES RSMK+PL SYSTDEDAA+GAWVLLEVD K+ RR+R TTP+VRL LA
Sbjct: 1 MDIPDRFRLQASPPPALNQSIVKRGSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRRRRVTTPNVRLTGLA 112
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.970e-36 Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1
Query: 7 DEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKK 294
+E L+M PDGF LQA PP ALDQS +KRGVLVKLGLGWFGGVI+RR+HP SR +YD +LH D S RSMKLPL SYSTDEDA VG+WVLLEV+Q++
Sbjct: 1875 EESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEE 1972
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5K5A6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A6_9PHAE) HSP 1 Score: 117 bits (292), Expect = 4.630e-28 Identity = 64/113 (56.64%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRL 339
PE+E LKM PDGF LQA PPPALDQS +KRGVLVKLGLGWFGG MK+PL SY+TDEDAA+GAWVLLEVD K+G+ RR+R RL
Sbjct: 347 PEEEALKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGG--------------------------MKMPLDSYNTDEDAAIGAWVLLEVDPKEGIGRRKRGIPSMGRL 433
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 103 bits (256), Expect = 4.530e-26 Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 4 EDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDD--ESPRSMKLPLASYSTDEDAAVGAWVLLE 279
++E+ M PD F +QAC P ALD S ++RGVLV LG+GWFGGVITR+S +R YD +H D +S RSMKLPL Y D DA VG+W+LLE
Sbjct: 4 DEEIHAMEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLE 97
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE) HSP 1 Score: 102 bits (253), Expect = 5.660e-26 Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILH 189
PE+E LKM PDGF LQA PPPALDQS +KRGVLVKLGLGWFGGV++RRSHP SRQ+YD ILH
Sbjct: 28 PEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVILH 92
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 3.960e-24 Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSI--LHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRAT 321
PEDE+ M P GF +Q P AL + ++RGVLV+LG+GWFGG+IT++ +R YD L D+S R MKLPL YS D DAAVG+WVLLE + G RR T
Sbjct: 30 PEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESVSRSGRVRRTNVT 138
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JUF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF4_9PHAE) HSP 1 Score: 104 bits (260), Expect = 4.470e-24 Identity = 56/88 (63.64%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDDESPRSMKLPLASYSTDEDAAVGA 264
PE+E LKM +GF LQA PPPALDQS +KRGVL+KLGLGWFGG Y ILH DES RSMK+PL SYST+EDAA+GA
Sbjct: 87 PEEETLKMDILNGFRLQASPPPALDQSIVKRGVLLKLGLGWFGG----------EYDYRVILHCDESTRSMKMPLESYSTEEDAAIGA 164
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE) HSP 1 Score: 104 bits (260), Expect = 9.480e-24 Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 4 EDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDD--ESPRSMKLPLASYSTDEDAAVGAWVLLE 279
+DE+ M PDGF +QA P ALD S ++RG+LV+LG+GWFGGVITR+S +R YD +H D S RSMKLPL Y D DA VG+W+LLE
Sbjct: 546 DDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLE 639
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.130e-23 Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 139 TRRSHPLSRQKYDS--ILHDDESPR--SMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
T SHP SRQ+YD ILH DES R SMK+PL SYSTDED A+GAWVLLEVD K+G RRR+R TTP+VRL +LA
Sbjct: 18 TSSSHPASRQEYDYRVILHCDESTRKFSMKMPLESYSTDEDVAIGAWVLLEVDPKEGSRRRKRVTTPNVRLTELA 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig155801.3649.1 >prot_H-elongata_contig155801.3649.1 ID=prot_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp MLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSback to top mRNA from alignment at H-elongata_contig155801:542..898+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig155801.3649.1 ID=mRNA_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig155801:542..898+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig155801:542..898+ >mRNA_H-elongata_contig155801.3649.1 ID=mRNA_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig155801:542..898+ (Himanthalia elongata Himel1 dioecious)back to top |