mRNA_H-elongata_contig155801.3649.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig155801.3649.1
Unique NamemRNA_H-elongata_contig155801.3649.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.030e-46
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   22 MSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILHD-DESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
            M  PDGF LQA PPP LDQS +KRGVLVKLGL WFGGVI+RRSHP SRQ+YD   ILH  DES RSMK+PL S STDEDAA+GAWVLLEV+ K+G  RR+R TTP+VRL +LA
Sbjct:    1 MDIPDGFRLQASPPPTLDQSIVKRGVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKEGSGRRKRVTTPTVRLTELA 113          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 8.610e-44
Identity = 79/112 (70.54%), Postives = 89/112 (79.46%), Query Frame = 1
Query:   22 MSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQK--YDSILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
            M  PD F LQA PPPAL+QS +KRG LV+LGLGWFGGVI+RRSHP SRQ+  Y  ILH  ES RSMK+PL SYSTDEDAA+GAWVLLEVD K+   RR+R TTP+VRL  LA
Sbjct:    1 MDIPDRFRLQASPPPALNQSIVKRGSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRRRRVTTPNVRLTGLA 112          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.970e-36
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1
Query:    7 DEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKK 294
            +E L+M  PDGF LQA PP ALDQS +KRGVLVKLGLGWFGGVI+RR+HP SR +YD   +LH D S RSMKLPL SYSTDEDA VG+WVLLEV+Q++
Sbjct: 1875 EESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEE 1972          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5K5A6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.630e-28
Identity = 64/113 (56.64%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRL 339
            PE+E LKM  PDGF LQA PPPALDQS +KRGVLVKLGLGWFGG                          MK+PL SY+TDEDAA+GAWVLLEVD K+G+ RR+R      RL
Sbjct:  347 PEEEALKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGG--------------------------MKMPLDSYNTDEDAAIGAWVLLEVDPKEGIGRRKRGIPSMGRL 433          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.530e-26
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    4 EDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDD--ESPRSMKLPLASYSTDEDAAVGAWVLLE 279
            ++E+  M  PD F +QAC P ALD S ++RGVLV LG+GWFGGVITR+S   +R  YD  +H D  +S RSMKLPL  Y  D DA VG+W+LLE
Sbjct:    4 DEEIHAMEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLE 97          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5KY33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY33_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.660e-26
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDS--ILH 189
            PE+E LKM  PDGF LQA PPPALDQS +KRGVLVKLGLGWFGGV++RRSHP SRQ+YD   ILH
Sbjct:   28 PEEETLKMDIPDGFRLQASPPPALDQSIVKRGVLVKLGLGWFGGVLSRRSHPASRQEYDYRVILH 92          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.960e-24
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSI--LHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRAT 321
            PEDE+  M  P GF +Q   P AL +  ++RGVLV+LG+GWFGG+IT++    +R  YD    L  D+S R MKLPL  YS D DAAVG+WVLLE   + G  RR   T
Sbjct:   30 PEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESVSRSGRVRRTNVT 138          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JUF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.470e-24
Identity = 56/88 (63.64%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PEDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDDESPRSMKLPLASYSTDEDAAVGA 264
            PE+E LKM   +GF LQA PPPALDQS +KRGVL+KLGLGWFGG             Y  ILH DES RSMK+PL SYST+EDAA+GA
Sbjct:   87 PEEETLKMDILNGFRLQASPPPALDQSIVKRGVLLKLGLGWFGG----------EYDYRVILHCDESTRSMKMPLESYSTEEDAAIGA 164          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.480e-24
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    4 EDEMLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLSRQKYDSILHDD--ESPRSMKLPLASYSTDEDAAVGAWVLLE 279
            +DE+  M  PDGF +QA  P ALD S ++RG+LV+LG+GWFGGVITR+S   +R  YD  +H D   S RSMKLPL  Y  D DA VG+W+LLE
Sbjct:  546 DDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLE 639          
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.130e-23
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:  139 TRRSHPLSRQKYDS--ILHDDESPR--SMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQRATTPSVRLRDLA 351
            T  SHP SRQ+YD   ILH DES R  SMK+PL SYSTDED A+GAWVLLEVD K+G RRR+R TTP+VRL +LA
Sbjct:   18 TSSSHPASRQEYDYRVILHCDESTRKFSMKMPLESYSTDEDVAIGAWVLLEVDPKEGSRRRKRVTTPNVRLTELA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155801.3649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAW0_9PHAE9.030e-4672.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD01_9PHAE8.610e-4470.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE2.970e-3671.43Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5A6_9PHAE4.630e-2856.64DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUW4_9PHAE4.530e-2656.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY33_9PHAE5.660e-2676.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE3.960e-2450.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF4_9PHAE4.470e-2463.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE9.480e-2456.38C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K105_9PHAE1.130e-2369.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155801contigH-elongata_contig155801:542..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7FI08
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.8145988-UTR-H-elongata_contig155801:541..5531622929918.8145988-UTR-H-elongata_contig155801:541..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155801 542..553 +
1691679208.2150166-UTR-H-elongata_contig155801:541..5531691679208.2150166-UTR-H-elongata_contig155801:541..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig155801 542..553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929918.8257341-CDS-H-elongata_contig155801:553..8981622929918.8257341-CDS-H-elongata_contig155801:553..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155801 554..898 +
1691679208.2264185-CDS-H-elongata_contig155801:553..8981691679208.2264185-CDS-H-elongata_contig155801:553..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig155801 554..898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155801.3649.1prot_H-elongata_contig155801.3649.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig155801 554..898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig155801.3649.1

>prot_H-elongata_contig155801.3649.1 ID=prot_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MLKMSNPDGFILQACPPPALDQSTMKRGVLVKLGLGWFGGVITRRSHPLS
RQKYDSILHDDESPRSMKLPLASYSTDEDAAVGAWVLLEVDQKKGVRRRQ
RATTPSVRLRDLAP*
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mRNA from alignment at H-elongata_contig155801:542..898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig155801.3649.1 ID=mRNA_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig155801:542..898+ (Himanthalia elongata Himel1 dioecious)
CCCGAGGACGAAATGCTGAAGATGAGCAATCCGGACGGGTTCATACTTCA GGCGTGCCCACCGCCGGCCCTCGACCAGTCGACAATGAAGCGTGGGGTCC TCGTGAAACTCGGACTGGGTTGGTTCGGCGGGGTGATAACTCGCAGATCT CACCCCCTTTCACGGCAGAAGTACGACTCCATCCTGCACGACGATGAAAG CCCACGTAGCATGAAGTTGCCGTTGGCGTCGTACAGTACGGATGAAGACG CTGCAGTTGGGGCGTGGGTGCTGCTAGAGGTAGACCAAAAGAAGGGGGTT AGGAGGCGACAAAGGGCGACAACCCCCAGTGTTCGCCTTAGGGACCTTGC CCCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig155801:542..898+

>mRNA_H-elongata_contig155801.3649.1 ID=mRNA_H-elongata_contig155801.3649.1|Name=mRNA_H-elongata_contig155801.3649.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig155801:542..898+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAAGATGAGCAATCCGGACGGGTTCATACTTCAGGCGTGCCCACC
GCCGGCCCTCGACCAGTCGACAATGAAGCGTGGGGTCCTCGTGAAACTCG
GACTGGGTTGGTTCGGCGGGGTGATAACTCGCAGATCTCACCCCCTTTCA
CGGCAGAAGTACGACTCCATCCTGCACGACGATGAAAGCCCACGTAGCAT
GAAGTTGCCGTTGGCGTCGTACAGTACGGATGAAGACGCTGCAGTTGGGG
CGTGGGTGCTGCTAGAGGTAGACCAAAAGAAGGGGGTTAGGAGGCGACAA
AGGGCGACAACCCCCAGTGTTCGCCTTAGGGACCTTGCCCCTTGAATGCT
GAAGATGAGCAATCCGGACGGGTTCATACTTCAGGCGTGCCCACCGCCGG
CCCTCGACCAGTCGACAATGAAGCGTGGGGTCCTCGTGAAACTCGGACTG
GGTTGGTTCGGCGGGGTGATAACTCGCAGATCTCACCCCCTTTCACGGCA
GAAGTACGACTCCATCCTGCACGACGATGAAAGCCCACGTAGCATGAAGT
TGCCGTTGGCGTCGTACAGTACGGATGAAGACGCTGCAGTTGGGGCGTGG
GTGCTGCTAGAGGTAGACCAAAAGAAGGGGGTTAGGAGGCGACAAAGGGC
GACAACCCCCAGTGTTCGCCTTAGGGACCTTGCCCCTTGA
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