prot_H-elongata_contig15554.3641.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15554.3641.1
Unique Nameprot_H-elongata_contig15554.3641.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length169
Homology
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BLAST of mRNA_H-elongata_contig15554.3641.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.980e-52
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 0 
Query:    2 AKKVVSENEAKKALEASYERFKGDEIDLGSAISKVDKTLSFLDMGVRSMKDTGPDGVMYHCVVNKLPDEVAKLHGSKLVEWQVEAFKVILAMF----NQRQASFDIAFGSAHEYFSSTASKQYQMILTFAEHLVRDFWLKRPHNSAGYRLGVRAYVELPDLLKSYNLPVPQV 169
            A+KV+S++EA+KAL+ SY+RF      L  AISKVDK LS +DMGVRSMK +GP+G++YHC +NK  DE+AKLHGSKL +WQV+AF+ ++  F     Q+    D+   + H       S + +MI +FA+ LV DFWL RP N   YRLGVR YVELP+LLK+++L VPQV
Sbjct:   17 ARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQV 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15554.3641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSK7_ECTSI5.980e-5252.91Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 2..99
e-value: 3.4E-6
score: 27.1
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 3..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15554contigH-elongata_contig15554:4118..7340 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15554.3641.1mRNA_H-elongata_contig15554.3641.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15554 4118..7340 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15554.3641.1 ID=prot_H-elongata_contig15554.3641.1|Name=mRNA_H-elongata_contig15554.3641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
QAKKVVSENEAKKALEASYERFKGDEIDLGSAISKVDKTLSFLDMGVRSM
KDTGPDGVMYHCVVNKLPDEVAKLHGSKLVEWQVEAFKVILAMFNQRQAS
FDIAFGSAHEYFSSTASKQYQMILTFAEHLVRDFWLKRPHNSAGYRLGVR
AYVELPDLLKSYNLPVPQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1