mRNA_H-elongata_contig15554.3641.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15554.3641.1
Unique NamemRNA_H-elongata_contig15554.3641.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15554.3641.1 vs. uniprot
Match: D8LSK7_ECTSI (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK7_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.980e-52
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:    4 AKKVVSENEAKKALEASYERFKGDEIDLGSAISKVDKTLSFLDMGVRSMKDTGPDGVMYHCVVNKLPDEVAKLHGSKLVEWQVEAFKVILAMF----NQRQASFDIAFGSAHEYFSSTASKQYQMILTFAEHLVRDFWLKRPHNSAGYRLGVRAYVELPDLLKSYNLPVPQV 507
            A+KV+S++EA+KAL+ SY+RF      L  AISKVDK LS +DMGVRSMK +GP+G++YHC +NK  DE+AKLHGSKL +WQV+AF+ ++  F     Q+    D+   + H       S + +MI +FA+ LV DFWL RP N   YRLGVR YVELP+LLK+++L VPQV
Sbjct:   17 ARKVMSQDEAQKALDVSYQRFGELAFTLDEAISKVDKMLSSMDMGVRSMKASGPNGLIYHCFINKTADEIAKLHGSKLEDWQVKAFRGMIEKFAKSEEQQLELLDLQGLTEHIKTKEAESTKREMIKSFADQLVDDFWLTRPGNDVFYRLGVRTYVELPELLKTFDLEVPQV 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15554.3641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSK7_ECTSI5.980e-5252.91Non-structural maintenance of chromosomes element ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15554contigH-elongata_contig15554:4118..7340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue3.3e-41
Seed eggNOG ortholog2880.D8LSK7
EggNOG free text desc.Nse1 non-SMC component of SMC5-6 complex
EggNOG OGs2EYQU@1,2T06J@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNon-structural maintenance of chromosomes element 1
Ec32 orthologEc-09_001990.1
Exons6
Model size507
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15554.3641.1prot_H-elongata_contig15554.3641.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15554 4118..7340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929917.9151957-CDS-H-elongata_contig15554:4117..42131622929917.9151957-CDS-H-elongata_contig15554:4117..4213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 4118..4213 -
1691679207.7504876-CDS-H-elongata_contig15554:4117..42131691679207.7504876-CDS-H-elongata_contig15554:4117..4213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 4118..4213 -
1622929917.9359-CDS-H-elongata_contig15554:4589..46371622929917.9359-CDS-H-elongata_contig15554:4589..4637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 4590..4637 -
1691679207.7613144-CDS-H-elongata_contig15554:4589..46371691679207.7613144-CDS-H-elongata_contig15554:4589..4637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 4590..4637 -
1622929917.9774837-CDS-H-elongata_contig15554:5153..51721622929917.9774837-CDS-H-elongata_contig15554:5153..5172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 5154..5172 -
1691679207.7690263-CDS-H-elongata_contig15554:5153..51721691679207.7690263-CDS-H-elongata_contig15554:5153..5172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 5154..5172 -
1622929917.9950342-CDS-H-elongata_contig15554:5674..58201622929917.9950342-CDS-H-elongata_contig15554:5674..5820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 5675..5820 -
1691679207.7840333-CDS-H-elongata_contig15554:5674..58201691679207.7840333-CDS-H-elongata_contig15554:5674..5820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 5675..5820 -
1622929918.0109637-CDS-H-elongata_contig15554:6664..67301622929918.0109637-CDS-H-elongata_contig15554:6664..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 6665..6730 -
1691679207.7937708-CDS-H-elongata_contig15554:6664..67301691679207.7937708-CDS-H-elongata_contig15554:6664..6730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 6665..6730 -
1622929918.0232625-CDS-H-elongata_contig15554:7208..73401622929918.0232625-CDS-H-elongata_contig15554:7208..7340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 7209..7340 -
1691679207.8097584-CDS-H-elongata_contig15554:7208..73401691679207.8097584-CDS-H-elongata_contig15554:7208..7340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15554 7209..7340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15554.3641.1

>prot_H-elongata_contig15554.3641.1 ID=prot_H-elongata_contig15554.3641.1|Name=mRNA_H-elongata_contig15554.3641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
QAKKVVSENEAKKALEASYERFKGDEIDLGSAISKVDKTLSFLDMGVRSM
KDTGPDGVMYHCVVNKLPDEVAKLHGSKLVEWQVEAFKVILAMFNQRQAS
FDIAFGSAHEYFSSTASKQYQMILTFAEHLVRDFWLKRPHNSAGYRLGVR
AYVELPDLLKSYNLPVPQV
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mRNA from alignment at H-elongata_contig15554:4118..7340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15554.3641.1 ID=mRNA_H-elongata_contig15554.3641.1|Name=mRNA_H-elongata_contig15554.3641.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3223bp|location=Sequence derived from alignment at H-elongata_contig15554:4118..7340- (Himanthalia elongata Himel1 dioecious)
CAGGCGAAAAAGGTAGTCTCTGAAAACGAAGCGAAGAAGGCGCTGGAGGC
TTCGTACGAGAGATTCAAGGGCGACGAAATCGACCTCGGATCGGCCATAT
CGAAGGTGGACAAGACGCTATCTTTCCTGGACGTGAGCTGCCTACTATTA
ATAGTACAGAATAATCTTGGATGTTACCCTTGTTCAACCCATCATCATTA
TGTTGCGTGGATAAACCAGTGCGTTGCTTGAGAGGATGGACCCCCTGCGC
CGATCCCCACAGGACAGCGATTTTGTGCTACTTTTAGCTATATGTCGCCA
CCTTCGCAAGGCACGTGCACCGTGTCCCAGTAAAGCCTTCCACGAGCTGA
GAACTCTCCGTGGGGTGTCACAAGAACAAAGCCGCGGAAGCCCAATGCGG
TGCGCCACGACGAGCCTTACCCCTTTTCCATTAAGCTGTACCTGAAGCTC
GAGTATTTTGGAGAATAGCAGCGCGCTCAAGGCAGGCAGTGGACGGTATC
CCTCGTAACGCATGCTTTTCCGGTATAAACTGAACCCCTATCAAGACTTT
TTTATTCTGGCGTTCCCTCGTCTTCACAAATGTGTTTTGCGCGCTTCTCC
CGGACGTCAGATGGGAGTGAGGAGTATGAAGGACACGGGACCCGACGGAG
TTATGTACCACTGCGTCGTGAATAAGGTATGAGCGAGCGAGCGAGCAACG
CGTACCGTAGACGTGTACATTATCCTGTATTCTGGGGTTTCTATCTTTCA
TCGGAAGCCTGCGAGCAAGATAGCAAGCGTAGGGCGGGACAGTTTGGACA
GTTTCAAGCCTTAGCTAGGAGACGAGGACACAGGAAGAAGGCAACAACCC
GCTCCTGCCGGGCCGTATCGTATTACACGTAAATAATGAAAATCGTATCG
TATTTCTCTCCCTTACCCCCCCCTCCCCCTCCAAGCTCAATCGAACACGG
AACGGAAGCTGGCTGTTCGTGTGGACTGACCTGTAGACCACGCAGTCGCC
GGTGATCAAGAAGTCTAGGAGTCAGGCCGTACGAATGAACACAAGCGATC
ATTCTGGCTAGTACAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATGTGTGTTTATGTATTTATTAAAAGGCACATAACCGCG
CAGTCCGACCCTATACTGTCATGTTAGTTATTCTAGGCTACTCTTCTCGC
ATACTAATGTTAGCATACTGATGTTAGCATACTCGCATTATTGATGATCC
TCCCATGTGTGTGCGTATGTGTTTTCTCAATGATCTCTTCCTCGGCATCT
TACTGTTAGACTAATGTTAGTAGGAGCTACAGACACCCCCTACTCGACCC
GGAGGACAAGCCGCTCGAATGAATCTCGGCCCCTTCAAACCTAGGATCGT
TGCCCGAGTCACCATCGCCGTCGAAATCACTTACACCCTCATTTGCCGAT
CCGAGACCCCACGAACGCTTACCCGGTAATGCACCCTCTGCTGCTTGGCG
TGGTGCTCTCCTGGAGGCAGTTGCCCGACGAGGTGGCCAAGCTGCACGGA
TCAAAGCTGGTGGAGTGGCAGGTGGAAGCATTCAAGGTCATCCTCGCCAT
GTTCAACCAGAGGCAAGCAAGCTTCGATATAGCTTTTGGTTCGGCCCATG
AATATTTTTCTTCCACGTCGAGTTCTCCACTATCCCGTCTCCGCCTTTCT
CTCATTCCACTATATCCTTATTTTGCCCATTTTCTCCCCAATCATGCGTT
TTCTGTAGTTTTTTTTTTTTTTCTCTCATTCCTCTTTTTCCTTTTTTTGC
CCCTTTTCTCCCCTTTCATGCGTTTTCTGTAGTTTTTTTTTTTTTTTGTC
GCCGTCCTTTTTTGGCTTCGTACTTCATTTAATCGTCCCCACCGCGCGCA
CGTTTACACGTTTTCAAGCTTTATTTATTTTTTTAGTCGCCTTTTTTGCT
TCTATTTTAAAAATTGAATTTTAGAGCTCTTTTCGTCTGTTGCAAGCAAG
CGACCCTCTTCCCGCTCTCCCTCTCTCTCACCCCACGGGGTGATTATTTT
ATACGGAGCGATACGGCGTTAAATCGATAAATAGCAACAATACGCTACCG
TGACCCCCCCCCCCCACCGTCCCTCACTTTGTCCGTTTACAGCGAAGGCG
ACCTGCTACGCTTGCCAGAGCTTCAAAGCAATATCAAGTCTCGCCAGAAG
AACTTGACCAACGAGGCAAGTTGCTGATCGCTTGTCTGGTGTTGTAAACG
ACGTGCAATTTTTCTTAGAGGGAGAGAAGGCTCTGCAAGCAACACGCGTA
TTTTTTGGAAGGCGTCGCGTCGCGGTTACAGCAGGAGTACGTAGTTTATA
CGGGCGACACAAGAGCGTTCCCGTTATTCTCGTACAGCTGGTGAGAAAAG
CCACACCCCGGCCCCCCTCCGTCCCCCAGCTGCCCTGCGTGATGACTTTT
AAAATTCCTATGACTCTACCCCCTCCGTCTTCACTCCCGAGGACGCGCGG
TCAGTGGTAAATGGTTTAAATCTAAAGCATTCGAAAATTGAGTACACCTC
CCCCTTCCCTCCCCACGAATCCAAAATTTAATGAAACCCCCACCCATTCC
GCGCCACCTTTTACCCGTTGCGCGCGGTCAATGTTCTTACAGCTAGTTCA
TGCAAAACCTGAGTACACCCCCTCTCCCCCCTCCCACGTCCTAACTTTGG
CAGATGATCCTGACGTTCGCCGAACATTTAGTGAGAGACTTCTGGCTCAA
GGTAAAAGCCTAGCCGCGGTATGCAAAACCAGAAGACCCAAGTGTGGTGC
GGTCGTCCCACTGTCTATCTACCTATATACCGTGCTGCTCCATTCTATAC
ATCATACATTCCCTGTACTGTACCGCCCTTTGTTTGGTTTCGATGTCCCA
CCAGTTTTGTTTACCTCTGTCATCACGAGGTATTGGTCGCAATATTGCCG
TGTGTTGACCGTTTGCGCACGCGTTGGGTTTTGTCCGTCCTCCGACCATA
TATATGTATTTGTGTGTATATTTATTAAATTGCATAAAACCGCGCAATCC
GGTCCTGTAATGTACATATATATATATATATATATATATATATGTATGTG
TGTGTGTGTGTGTTCCGATGTGTACAGCGCCCTCATAACAGCGCAGGTTA
TCGACTCGGGGTCAGAGCCTACGTAGAATTGCCCGACCTGCTCAAGTCGT
ACAATTTGCCGGTCCCTCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig15554:4118..7340-

>mRNA_H-elongata_contig15554.3641.1 ID=mRNA_H-elongata_contig15554.3641.1|Name=mRNA_H-elongata_contig15554.3641.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig15554:4118..7340- (Himanthalia elongata Himel1 dioecious)
CAGGCGAAAAAGGTAGTCTCTGAAAACGAAGCGAAGAAGGCGCTGGAGGC
TTCGTACGAGAGATTCAAGGGCGACGAAATCGACCTCGGATCGGCCATAT
CGAAGGTGGACAAGACGCTATCTTTCCTGGACCAGGCGAAAAAGGTAGTC
TCTGAAAACGAAGCGAAGAAGGCGCTGGAGGCTTCGTACGAGAGATTCAA
GGGCGACGAAATCGACCTCGGATCGGCCATATCGAAGGTGGACAAGACGC
TATCTTTCCTGGACATGGGAGTGAGGAGTATGAAGGACACGGGACCCGAC
GGAGTTATGTACCACTGCGTCGTGAATAAGATGGGAGTGAGGAGTATGAA
GGACACGGGACCCGACGGAGTTATGTACCACTGCGTCGTGAATAAGTTGC
CCGACGAGGTGGCCAAGCTGCACGGATCAAAGCTGGTGGAGTGGCAGGTG
GAAGCATTCAAGGTCATCCTCGCCATGTTCAACCAGAGGCAAGCAAGCTT
CGATATAGCTTTTGGTTCGGCCCATGAATATTTTTCTTCCACTTGCCCGA
CGAGGTGGCCAAGCTGCACGGATCAAAGCTGGTGGAGTGGCAGGTGGAAG
CATTCAAGGTCATCCTCGCCATGTTCAACCAGAGGCAAGCAAGCTTCGAT
ATAGCTTTTGGTTCGGCCCATGAATATTTTTCTTCCACAGCTTCAAAGCA
ATATCAAAGCTTCAAAGCAATATCAAATGATCCTGACGTTCGCCGAACAT
TTAGTGAGAGACTTCTGGCTCAAGATGATCCTGACGTTCGCCGAACATTT
AGTGAGAGACTTCTGGCTCAAGCGCCCTCATAACAGCGCAGGTTATCGAC
TCGGGGTCAGAGCCTACGTAGAATTGCCCGACCTGCTCAAGTCGTACAAT
TTGCCGGTCCCTCAGGTGCGCCCTCATAACAGCGCAGGTTATCGACTCGG
GGTCAGAGCCTACGTAGAATTGCCCGACCTGCTCAAGTCGTACAATTTGC
CGGTCCCTCAGGTG
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